Silkworm Genome Informatics Database

Gene

KWMTBOMO03696

Annotation

Homeobox_protein_[Operophtera_brumata]

Location

Bomo_Chr6(-):15717638-15718433 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.655

CDS

ATGATGACTATGGACGTCGGGATGTACAACAACCAACAGAACGGGTACGGAGGCGCCGAGTACTATCAGCAGGGGACCGGGTACCAGCCGCCTTACGAGGGCTACCACGAGGGATACTACGAGCCGACGACGCACTACTACGAGCCTTTACTGCCCGGGCAGGCGGCCCACGACCACCCCCCCGCGCCGGTCATAAGCACAGACACGGGACTCTGTTACACGAATTTGGATTACGGTGACCTGCAGCCAAATTACCCTTTACACGCCTTACCGCAGCATCCGATTGAGCCGTTCAAGCACCGGGATGAGGTCCCGAGACCGGAGGAGATGCACTTACACGAGCACAAGCTCGACAACCACTACTTGGAGACGAAATACAACATGCATTTCGTTGATGAGTCCTCCATGCAGTACAACCACTCCGGGTCCCCGCTCTCCTGCGCTGAGTTTGAGCACTACCAGCCCAAAGAGGAGTACGGAGGACTGAGGGAGGGATTCCCTCGTGAAGGAGAGACGATGTCGCATCTTATCCCGAGCGGTCACCAATCCCACCCCTCTCACGCCACTGTGCCGACCTACAAATGGATGCAAGTCAAGAGAAACGTACCCAAACCAACCGGTGAGTTCTACAATGATTTTGTTTTTAGAAAATACTTTTAA

Protein

MMTMDVGMYNNQQNGYGGAEYYQQGTGYQPPYEGYHEGYYEPTTHYYEPLLPGQAAHDHPPAPVISTDTGLCYTNLDYGDLQPNYPLHALPQHPIEPFKHRDEVPRPEEMHLHEHKLDNHYLETKYNMHFVDESSMQYNHSGSPLSCAEFEHYQPKEEYGGLREGFPREGETMSHLIPSGHQSHPSHATVPTYKWMQVKRNVPKPTGEFYNDFVFRKYF

Uniprot

A0A1E1WJK6 A0A1Q1M8Z8 A0A2H1WRX2 A0A2A4JJB6 A0A0L7LSI8 A0A3S2LVB7 + More
A0A212EKI6 A0A194RE87 A0A194QG49 V5H0R6 U4UI80 N6TLI8 A0A1W4WDS8 N6UQL1 A0A1B6EE53 A0A1S4F9X9 A0A1B6JPR4 A0A1B6I4Y8

Pubmed

28111552 26227816 22118469 26354079 23537049 17510324 + More

EMBL

GDQN01003861 JAT87193.1 KU663678 AQM32560.1 ODYU01010211 SOQ55174.1 + More
NWSH01001373 PCG71493.1 JTDY01000173 KOB78450.1 RSAL01000004 RVE54558.1 AGBW02014259 OWR42009.1 KQ460500 KPJ14241.1 KQ459011 KPJ04389.1 GALX01000604 JAB67862.1 KB632368 ERL93694.1 APGK01031596 APGK01031597 APGK01031598 APGK01031599 KB740818 ENN78853.1 APGK01020573 KB740219 ENN81027.1 GEDC01001080 JAS36218.1 GECU01006614 JAT01093.1 GECU01025710 JAS81996.1

Proteomes

UP000218220 UP000037510 UP000283053 UP000007151 UP000053240 UP000053268 + More
UP000030742 UP000019118 UP000192223

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A1E1WJK6 A0A1Q1M8Z8 A0A2H1WRX2 A0A2A4JJB6 A0A0L7LSI8 A0A3S2LVB7 + More
A0A212EKI6 A0A194RE87 A0A194QG49 V5H0R6 U4UI80 N6TLI8 A0A1W4WDS8 N6UQL1 A0A1B6EE53 A0A1S4F9X9 A0A1B6JPR4 A0A1B6I4Y8

KEGG

NA

GO

GO:0005634 GO:0006355 GO:0043565 GO:0003677

Subcellular location

Nucleus

Length:

219

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15817

outside

1 - 219

Pi

19.669729

Theta

19.655369

Tajima's D

0.072891

CLR

0.554808

CSRT

0.39918004099795

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics