Gene

KWMTBOMO03695

Pre Gene Modal

BGIBMGA014283

Annotation

PREDICTED:_homeobox_protein_Hox-A1-like?_partial_[Bombyx_mori]

Location

Bomo_Chr6(-):15669173-15669663      View in EpiBrowser

Full name

Homeobox protein Hox-A1      

Alternative Name

Hox.lab2

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 3.387

CDS

ATGATGGCCAATCCCTTACTCAACCTGAACAACACCGGGCGGACTAACTTCACCAACAAACAGCTCACTGAATTGGAAAAAGAATTCCACTTCAACAAATACTTGACCAGAGCGAGGAGGATAGAAATAGCCTCAGCGTTACAACTCAACGAGACGCAAGTTAAAATATGGTTTCAGAACAGAAGGATGAAGCAGAAGAAACGGATCAAGGAGGGGCTGATAGTAGCGCCCGAGGCCGCCCCGACCACGTCAACCCAAACAAGTGTGGGCTCTAATGAAAACAGCCGGGAGTCCAGTTAA

Protein

MMANPLLNLNNTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRIKEGLIVAPEAAPTTSTQTSVGSNENSRESS

Description

Sequence-specific transcription factor. Part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures. Seems to act in the maintenance and/or generation of hindbrain segments.

Similarity

Belongs to the Antp homeobox family. Labial subfamily.

Keywords

Developmental protein   DNA-binding   Homeobox   Nucleus   Transcription   Transcription regulation  

Feature

chain  Homeobox protein Hox-A1

Uniprot

H9JY61   A0A194QFR6   A0A0L7LST8   A0A2H1X1Q6   A0A2A4JJB6   A0A194R8S9   + More
A0A3S2LVB7   A0A1Q1M8Z8   A0A212EKI6   A0A1E1WJK6   A0A0A9YBK5   A0A2R7W004   A0A1J1HRR5   Q6IT82   A0A232FH22   E2A2C5   A0A0J7KS31   A0A1J1HVP0   Q9N624   A0A146L2Z7   A0A182Q398   A0A443SKW0   A0A131XM71   N6UJN6   A0A182VPX7   N6T1D1   A0A182XPJ5   A0A2A3EAH0   Q17AS0   A0A0C9RJB5   A0A182NN48   V5H0R6   A0A088AIF7   A0A1B6G932   D6W945   Q95UQ9   A0A182FXB7   A0A182J6Z8   A0A182M244   B1NI86   A0A164L950   A0A0P4W6P6   A0A1I8PXQ7   A0A154P583   A0A182KYT1   A0A2S2Q1V8   A0A2S2Q9D0   A0A182IEP1   B0W3N4   A0A0N7ZCD2   A0A182PST6   A0A1A9VQS3   A0A1A9X929   A0A182RE70   A0A1W4WDS8   A0A1B0A481   A0A147BH66   B7Q9V6   A0A132AGH1   A0A1I8MIR6   A0A1B0AWR0   A0A158NAC4   A0A1S4F9X9   A0A151I079   O76842   Q9U719   A7UUI8   Q08821   A0A2D0PZH3   A0A224YZ59   A0A094KX27   B3M0R9   A0A131YDA0   A0A131YAX7   A0A091KIR4   A0A1L8FRB8   Q9U9U2   Q801D4   A0A091LAG6  

Pubmed

19121390    26354079    26227816    28111552    22118469    25401762    + More
15342481    28648823    20798317    11455439    26823975    28049606    23537049    17510324    18362917    19820115    11901122    20966253    29652888    26555130    25315136    21347285    9724761    10625558    12364791    14747013    17210077    1678362    28797301    17994087    26830274    27762356    10391241    12547909   

EMBL

BABH01042325    BABH01045364    KQ459011    KPJ04388.1    JTDY01000173    KOB78449.1    + More
ODYU01012767    SOQ59239.1    NWSH01001373    PCG71493.1    KQ460500    KPJ14243.1    RSAL01000004    RVE54558.1    KU663678    AQM32560.1    AGBW02014259    OWR42009.1    GDQN01003861    JAT87193.1    GBHO01016684    JAG26920.1    KK854206    PTY13074.1    CVRI01000017    CRK90218.1    AY627364    AAT44526.1    NNAY01000213    OXU29985.1    GL436034    EFN72416.1    LBMM01003858    KMQ93049.1    CRK90217.1    AF231103    AF231104    AAF64149.1    GDHC01015735    JAQ02894.1    AXCN02002215    NCKV01001538    RWS28164.1    GEFH01001286    JAP67295.1    APGK01031351    APGK01031352    APGK01031353    KB740808    ENN78887.1    APGK01048101    KB741098    KB632368    ENN73889.1    ERL93696.1    KZ288325    PBC28061.1    CH477330    EAT43388.1    GBYB01013332    JAG83099.1    GALX01000604    JAB67862.1    GECZ01010848    JAS58921.1    KQ971312    EEZ99257.1    AY043293    AAK96034.1    AXCM01000327    EF490812    ABS18809.1    LRGB01003163    KZS03903.1    GDRN01068955    JAI64121.1    KQ434820    KZC07047.1    GGMS01002438    MBY71641.1    GGMS01004967    MBY74170.1    APCN01009323    DS231833    EDS32181.1    GDRN01068956    JAI64120.1    GEGO01005267    JAR90137.1    ABJB010280073    DS891538    EEC15651.1    JXLN01014538    KPM10106.1    JXJN01004888    ADTU01010218    ADTU01010219    KQ976627    KYM78919.1    AJ007431    CAA07497.1    AF163856    AAD55932.1    AAAB01008961    EDO63634.2    X62053    L25856    GFPF01008457    MAA19603.1    KL347189    KFZ56529.1    CH902617    EDV42084.1    GEDV01012511    JAP76046.1    GEDV01012510    JAP76047.1    KK529980    KFP27714.1    CM004477    OCT74101.1    AF151663    AAD46166.2    AY183723    AAO43016.1    KL306062    KFP52170.1   

Proteomes

UP000005204    UP000053268    UP000037510    UP000218220    UP000053240    UP000283053    + More
UP000007151    UP000183832    UP000215335    UP000000311    UP000036403    UP000075886    UP000288716    UP000019118    UP000075920    UP000030742    UP000076407    UP000242457    UP000008820    UP000075884    UP000005203    UP000007266    UP000069272    UP000075880    UP000075883    UP000076858    UP000095300    UP000076502    UP000075882    UP000075840    UP000002320    UP000075885    UP000078200    UP000092443    UP000075900    UP000192223    UP000092445    UP000001555    UP000095301    UP000092460    UP000005205    UP000078540    UP000007062    UP000221080    UP000007801    UP000186698   

PRIDE

H9JY61   

Pfam

PF00046   Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS       
IPR009057   Homeobox-like_sf       
IPR020479   Homeobox_metazoa       
IPR000047   HTH_motif       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JY61   A0A194QFR6   A0A0L7LST8   A0A2H1X1Q6   A0A2A4JJB6   A0A194R8S9   + More
A0A3S2LVB7   A0A1Q1M8Z8   A0A212EKI6   A0A1E1WJK6   A0A0A9YBK5   A0A2R7W004   A0A1J1HRR5   Q6IT82   A0A232FH22   E2A2C5   A0A0J7KS31   A0A1J1HVP0   Q9N624   A0A146L2Z7   A0A182Q398   A0A443SKW0   A0A131XM71   N6UJN6   A0A182VPX7   N6T1D1   A0A182XPJ5   A0A2A3EAH0   Q17AS0   A0A0C9RJB5   A0A182NN48   V5H0R6   A0A088AIF7   A0A1B6G932   D6W945   Q95UQ9   A0A182FXB7   A0A182J6Z8   A0A182M244   B1NI86   A0A164L950   A0A0P4W6P6   A0A1I8PXQ7   A0A154P583   A0A182KYT1   A0A2S2Q1V8   A0A2S2Q9D0   A0A182IEP1   B0W3N4   A0A0N7ZCD2   A0A182PST6   A0A1A9VQS3   A0A1A9X929   A0A182RE70   A0A1W4WDS8   A0A1B0A481   A0A147BH66   B7Q9V6   A0A132AGH1   A0A1I8MIR6   A0A1B0AWR0   A0A158NAC4   A0A1S4F9X9   A0A151I079   O76842   Q9U719   A7UUI8   Q08821   A0A2D0PZH3   A0A224YZ59   A0A094KX27   B3M0R9   A0A131YDA0   A0A131YAX7   A0A091KIR4   A0A1L8FRB8   Q9U9U2   Q801D4   A0A091LAG6  

PDB

1B72     E-value=1.56822e-18,     Score=221

KEGG

101738957    K09301 homeobox protein HoxA/B/D1 | (RefSeq) homeobox protein Hox-A1-like

GO

GO:0005634   GO:0006355   GO:0043565   GO:0003677   GO:0004000   GO:0007275   GO:0005737   GO:0006432   GO:0000049   GO:0004812   GO:0043039   GO:0042555   GO:0048384  

Subcellular location

Nucleus  

Length:

99

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00710000000000001

Exp number, first 60 AAs:

0.00399

Total prob of N-in:

0.08886

outside

1  -  99

 

 

Pi

36.57107

Theta

27.955978

Tajima's D

0.974931

CLR

0

CSRT

0.657267136643168

Interpretation

Uncertain