Gene

KWMTBOMO03687  Validated by peptides from experiments

Annotation

PREDICTED:_fragile_X_mental_retardation_syndrome-related_protein_1_homolog_A_[Amyelois_transitella]

Location

Bomo_Chr6(-):15588017-15597093      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.186

CDS

ATGGAGGATTTGTCGGTCGAGGTGTACGGTGAAAATGGTGCTTATTATAAGGCCATTGTCACCGACGTGCTCGACAACGAGGTTCTAGTAGCCTTTGAAAATGACTGGCAGCCAGAATCAAAGTTTCCGTTTTCTCAAGTTTTCTTACCACCTAAAGACACTGGCAAACACACAGAATTTACTGAGAACCAGGAGGTGGAAGTATTTGCTAGGTCTAATGAGAAAGAAGCGTGTGGGTGGTGGACTGCAAATATCAAGATGATGAGGGGTGATTTCCTTGTGATAGAATATCTAGAATGGGATAACTGTTATACGGAAATTGTGCCTAAAGATCGTCTTAGGGTAAAATTACCGAAGACCCCAATAGACAAAAACACATTTCACAAGTTTGAAATAACAGTACCTGATGAACTGAAGGACTACGCGAAGGTGGAGAACGCGCACAAGGAGTTCCAGAAGGCGATCGGCGCCGCGCTCGTCTGGTACGTGCCCGAGCGCGCCGTGCTCGCCGTGCTCTCCCGCTGCGCCTCCTCGCAGCGCCGCGCCACCATGCTGCAGGAGATGCACTTCCGAAATTTGACCCAGAAACTTATGTTATTGAAGAAAACAGAGGAGGCAGCGAGGCAGCTTGAATCTACGAAAATAAACAATCAGGGCGGATACACCGAAGAGTTCAGCGTGCGCGAGGAGCTCATGGGTCTGGCGATCGGCACGCACGGGGCCAACATCCAGCAGGCTCGCAAGCTGCCCGGGGTCTCCAACATTGAGCTTGAGGAACTCACGTGCACTTTCAAAATATGTGGAGAGTCGGCGGAGGCGGTGCGGGCGGCGCGCGCCGTGCTGGAGTACGCGGAGGAGTCGGTGCGGGTGCCGCGACAGCTCGTCGGGAAGGTCATCGGCAAGAACGGGAAGCTCATACAGGAGATCCTGGACAAGAGCGGCGTCGTCCGGGTGAAAGTAGAAGGCGACAACGAGCCGCAGCCGGTGGGCCCCCGCGAGGACGGCGTCGTTCCTTTCACATTTGTCGGTACTAAAGAAAACATCGCCAATGCTAAAGTACTTGTCGATTATCACATTGCGCATCTCAAGGAGGTGGAGCAGCTCCGACTGGAGAAGCAGGAGATCGACCAGCAGCTGCGCGTGGTGCTGGGCAGCGCCGCCGCGCACCCGCCGCCCCCCGCGCGCGCGCGCCGCCCCCGCCGACCCCCGCCAGGTACCGATATGTTTCAATTCTATTTTAATTTATTTATTACAAGCGGTCCGCTCCGGCTCCGCTCGGGTCTTTAA

Protein

MEDLSVEVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEFQKAIGAALVWYVPERAVLAVLSRCASSQRRATMLQEMHFRNLTQKLMLLKKTEEAARQLESTKINNQGGYTEEFSVREELMGLAIGTHGANIQQARKLPGVSNIELEELTCTFKICGESAEAVRAARAVLEYAEESVRVPRQLVGKVIGKNGKLIQEILDKSGVVRVKVEGDNEPQPVGPREDGVVPFTFVGTKENIANAKVLVDYHIAHLKEVEQLRLEKQEIDQQLRVVLGSAAAHPPPPARARRPRRPPPGTDMFQFYFNLFITSGPLRLRSGL

Uniprot

A0A1E1WVH8   A0A2H1WUI0   A0A3S2NHV0   A0A1E1WE38   A0A212F865   A0A194QFR3   + More
A0A2A4JIT5   B5UB88   A0A2J7QFZ4   A0A2J7QG01   A0A2J7QG40   A0A2A4JHD8   A0A151ITX4   A0A195BBH0   A0A151WRM0   F4WRC2   A0A195FKB7   E2BP71   A0A2J7QFZ0   A0A0L7QZG7   A0A2A3EAN8   A0A0N0BJX1   A0A2J7QFZ2   A0A088AFK9   K7J4S5   E0VTZ1   A0A0C9QAI8   A0A1B6EF00   A0A0T6B5R3   A0A151I6J4   A0A1B6C9Y3   A0A1Y1L3K9   A0A158NUQ4   A0A1Y1L636   A0A0C9RS70   A0A1Y1L3N1   A0A0C9RUZ1   A0A1Q3G1D7   A0A154PLZ7   A0A1Q3G1D1   A0A1Q3G1G4   A0A232EZB3   A0A1Q3G1C9   A0A1Q3G1D5   A0A1Y1L3L8   T1HNH5   A0A0P6DEW5   U5EVG2   A0A182W617   A0A0P6D7F2   A0A0P5KWS8   A0A164TTC6   A0A2M4BE66   A0A2M4BEC9   A0A0P6HLJ4   A0A2M3Z4K4   A0A224XL23   A0A0P5US71   A0A0P6I714   A0A0P6A390   A0A2M3ZGW9   A0A0P5ZZT8   A0A0P4YNV7   A0A0N8C753   A0A0P6BS94   A0A182FMG2   A0A2M4AFD3   A0A1J1HLK0   A0A2M4BE56   E9H4B8   A0A2M4CIT7   W5JKM1   N6TC72   A0A0P5AWT1   A0A0P4VQ09   Q16W64   U4UDU2   A0A084VIP9   A0A0A9WX70   A0A2R7VPL8   A0A0P6AEW1   A0A0A9XM98   A0A0K8SL01   A0A0P6B1E3   A0A0K8SKG0   A0A310STN6   A0A087UUQ0   A0A0A9Z4A6   A0A0A9Z139   A0A336JX16   A0A0P6FEK3   A0A0N8CW69   A0A182RIL2   A0A0P4YCR0   A0A0N7ZN26   A0A0P5ZX58   B0XIX3   A0A0P5PUE5   A0A0P5MBT9   A0A0N8DB87  

Pubmed

22118469    26354079    19618465    21719571    20798317    20075255    + More
20566863    28004739    21347285    28648823    21292972    20920257    23761445    23537049    27129103    17510324    24438588    25401762   

EMBL

GDQN01000263    JAT90791.1    ODYU01011146    SOQ56710.1    RSAL01000033    RVE51457.1    + More
GDQN01005801    JAT85253.1    AGBW02009779    OWR49934.1    KQ459011    KPJ04383.1    NWSH01001373    PCG71484.1    AB461422    BAG71783.1    NEVH01014836    PNF27514.1    PNF27515.1    PNF27513.1    PCG71485.1    KQ980975    KYN10874.1    KQ976532    KYM81572.1    KQ982806    KYQ50441.1    GL888284    EGI63339.1    KQ981512    KYN40801.1    GL449553    EFN82491.1    PNF27516.1    KQ414681    KOC63993.1    KZ288301    PBC28833.1    KQ435710    KOX79781.1    PNF27517.1    AAZX01007335    DS235777    EEB16847.1    GBYB01011473    JAG81240.1    GEDC01000864    JAS36434.1    LJIG01009640    KRT82675.1    KQ978473    KYM93720.1    GEDC01027002    JAS10296.1    GEZM01065952    JAV68273.1    ADTU01026673    ADTU01026674    GEZM01065950    JAV68278.1    GBYB01011475    JAG81242.1    GEZM01065947    JAV68282.1    GBYB01011476    JAG81243.1    GFDL01001447    JAV33598.1    KQ434948    KZC12474.1    GFDL01001438    JAV33607.1    GFDL01001429    JAV33616.1    NNAY01001537    OXU23659.1    GFDL01001443    JAV33602.1    GFDL01001431    JAV33614.1    GEZM01065953    JAV68272.1    ACPB03021429    GDIQ01081699    JAN13038.1    GANO01001874    JAB57997.1    GDIQ01081698    JAN13039.1    GDIQ01178966    JAK72759.1    LRGB01001728    KZS10732.1    GGFJ01002205    MBW51346.1    GGFJ01002212    MBW51353.1    GDIQ01040871    JAN53866.1    GGFM01002698    MBW23449.1    GFTR01007296    JAW09130.1    GDIP01110937    GDIQ01017979    JAL92777.1    JAN76758.1    GDIQ01025517    JAN69220.1    GDIP01036402    JAM67313.1    GGFM01007000    MBW27751.1    GDIP01036401    JAM67314.1    GDIP01224925    JAI98476.1    GDIQ01108235    JAL43491.1    GDIP01025554    JAM78161.1    GGFK01006152    MBW39473.1    CVRI01000010    CRK88909.1    GGFJ01002195    MBW51336.1    GL732591    EFX73353.1    GGFL01000630    MBW64808.1    ADMH02001263    ETN63329.1    APGK01043587    KB741015    ENN75338.1    GDIP01193027    JAJ30375.1    GDKW01002106    JAI54489.1    CH477574    EAT38818.1    KB632237    ERL90473.1    ATLV01013378    ATLV01013379    KE524855    KFB37843.1    GBHO01034149    JAG09455.1    KK854011    PTY09299.1    GDIP01035253    JAM68462.1    GBHO01023666    JAG19938.1    GBRD01012025    GBRD01012023    JAG53799.1    GDIP01035254    JAM68461.1    GBRD01012028    GBRD01012022    JAG53796.1    KQ760545    OAD59971.1    KK121732    KFM81089.1    GBHO01005446    JAG38158.1    GBHO01005445    JAG38159.1    UFQS01000014    UFQT01000014    SSW97326.1    SSX17712.1    GDIQ01048805    JAN45932.1    GDIP01092895    JAM10820.1    GDIP01229330    JAI94071.1    GDIP01229329    JAI94072.1    GDIP01050752    JAM52963.1    DS233399    EDS29755.1    GDIQ01123229    JAL28497.1    GDIQ01157760    JAK93965.1    GDIP01050751    GDIP01050750    JAM52964.1   

Proteomes

UP000283053    UP000007151    UP000053268    UP000218220    UP000235965    UP000078492    + More
UP000078540    UP000075809    UP000007755    UP000078541    UP000008237    UP000053825    UP000242457    UP000053105    UP000005203    UP000002358    UP000009046    UP000078542    UP000005205    UP000076502    UP000215335    UP000015103    UP000075920    UP000076858    UP000069272    UP000183832    UP000000305    UP000000673    UP000019118    UP000008820    UP000030742    UP000030765    UP000054359    UP000075900    UP000002320   

Pfam

PF12235   FXMRP1_C_core        + More
PF17904   KH_9
PF00013   KH_1
PF05641   Agenet
PF18336   Tudor_FRX1
PF00096   zf-C2H2

Interpro

IPR008395   Agenet-like_dom        + More
IPR036612   KH_dom_type_1_sf       
IPR004087   KH_dom       
IPR004088   KH_dom_type_1       
IPR040472   FMRP_KH0       
IPR040148   FMR1       
IPR041560   Tudor_FRX1       
IPR022034   FXMRP1_C_core       
IPR013087   Znf_C2H2_type       
IPR016197   Chromo-like_dom_sf       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF54791   SSF54791        + More
SSF54160   SSF54160       
SSF57667   SSF57667       

Gene 3D

3.30.1370.10    

ProteinModelPortal

A0A1E1WVH8   A0A2H1WUI0   A0A3S2NHV0   A0A1E1WE38   A0A212F865   A0A194QFR3   + More
A0A2A4JIT5   B5UB88   A0A2J7QFZ4   A0A2J7QG01   A0A2J7QG40   A0A2A4JHD8   A0A151ITX4   A0A195BBH0   A0A151WRM0   F4WRC2   A0A195FKB7   E2BP71   A0A2J7QFZ0   A0A0L7QZG7   A0A2A3EAN8   A0A0N0BJX1   A0A2J7QFZ2   A0A088AFK9   K7J4S5   E0VTZ1   A0A0C9QAI8   A0A1B6EF00   A0A0T6B5R3   A0A151I6J4   A0A1B6C9Y3   A0A1Y1L3K9   A0A158NUQ4   A0A1Y1L636   A0A0C9RS70   A0A1Y1L3N1   A0A0C9RUZ1   A0A1Q3G1D7   A0A154PLZ7   A0A1Q3G1D1   A0A1Q3G1G4   A0A232EZB3   A0A1Q3G1C9   A0A1Q3G1D5   A0A1Y1L3L8   T1HNH5   A0A0P6DEW5   U5EVG2   A0A182W617   A0A0P6D7F2   A0A0P5KWS8   A0A164TTC6   A0A2M4BE66   A0A2M4BEC9   A0A0P6HLJ4   A0A2M3Z4K4   A0A224XL23   A0A0P5US71   A0A0P6I714   A0A0P6A390   A0A2M3ZGW9   A0A0P5ZZT8   A0A0P4YNV7   A0A0N8C753   A0A0P6BS94   A0A182FMG2   A0A2M4AFD3   A0A1J1HLK0   A0A2M4BE56   E9H4B8   A0A2M4CIT7   W5JKM1   N6TC72   A0A0P5AWT1   A0A0P4VQ09   Q16W64   U4UDU2   A0A084VIP9   A0A0A9WX70   A0A2R7VPL8   A0A0P6AEW1   A0A0A9XM98   A0A0K8SL01   A0A0P6B1E3   A0A0K8SKG0   A0A310STN6   A0A087UUQ0   A0A0A9Z4A6   A0A0A9Z139   A0A336JX16   A0A0P6FEK3   A0A0N8CW69   A0A182RIL2   A0A0P4YCR0   A0A0N7ZN26   A0A0P5ZX58   B0XIX3   A0A0P5PUE5   A0A0P5MBT9   A0A0N8DB87  

PDB

4QVZ     E-value=1.93702e-54,     Score=538

KEGG

101737089    K15516 fragile X mental retardation protein | (RefSeq) fragile X mental retardation syndrome-related

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003729   GO:0006417   GO:0016874   GO:0005844   GO:1904115   GO:0042803   GO:0071598   GO:0045182   GO:0003730   GO:0008089   GO:0030424   GO:0014069   GO:0048814   GO:0007417   GO:0043197   GO:0017148   GO:0043488   GO:0045727   GO:0005634   GO:0036464   GO:0060998   GO:0005737   GO:0035770   GO:1905244   GO:0043025   GO:0099578   GO:0003723   GO:0003676   GO:0046416   GO:0005515   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

PANTHER

PTHR10603  

Length:

428

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06844

Exp number, first 60 AAs:

0.00032

Total prob of N-in:

0.00221

outside

1  -  428

 

 

Pi

17.364655

Theta

14.100255

Tajima's D

-1.074632

CLR

3.120422

CSRT

0.12134393280336

Interpretation

Uncertain