Gene

KWMTBOMO03676  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002219

Annotation

PREDICTED:_trafficking_protein_particle_complex_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(-):15336481-15337139      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.057 Mitochondrial   Reliability : 1.73

CDS

ATGACAATTTACAATTTATACATATTCGATCGATATGGTACTTTATTGTATTATGGTGAGTGGAATCGTTCAAAACAGTCTGGAATGTCTATAGAGGAGGAAGGCAAATTAATGTACGGAATGCTTTTCTCGATAAAATCATTCGTTTCAAAGATTTCACCTTTAGATCCTAAAGATGGATTTAGTCATTATAAAACTTCAAAATACACCCTTCACTGCCTGGAGACACCCTCAGGGCTGAAGTTTGTGATGAATACAGACAACCAAGCACAGGGCGTCCGAGATCTCCTAAAAAAGATTTATGCTGAAATTTATGTTAAATATATGATAAGAAATCCGTTATGTGAAATGGGTGAACCCATTGTCAGTGACCTATTTAAAAGTAAATTAGATTTGTTTATCAAACAGACTCCTATTCATACTGTCAGAGCTTCTTGA

Protein

MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQTPIHTVRAS

Uniprot

H9IY86   Q2F5V3   I4DKS2   A0A3S2M5I6   A0A194RAF2   A0A2H1WZD2   + More
A0A1E1W338   S4P4F9   A0A2A4J2E0   A0A212EI62   D7EK51   A0A2P8Y3Q6   J3JYN0   A0A182MJY3   A0A182WAR4   A0A067R1K4   A0A1Y9G9I8   A0A182K5G4   A0A2M3ZJQ1   A0A182R2R5   Q7PSX5   A0A2M4AYT3   A0A2M4C3F6   A0A182P5M5   A0A182J8K3   A0A084WF88   A0A0T6B7X3   A0A182PKY8   A0A2K6VB79   A0A182NC46   F4X5R0   A0A158NY34   A0A195BQL2   A0A151I8R4   E9IG03   A0A151WHB0   A0A232EQI6   K7INE1   A0A0L7QZG4   A0A182XNF9   A0A182V7D8   A0A182U366   A0A182IDR1   A0A182LIF6   A0A151JLP8   E2AD34   A0A146LAV0   E0VKN0   E2BRB3   A0A182QAA3   A0A336KJX7   A0A2A3EAT0   A0A088AES0   A0A026VZB0   A0A336MSZ6   A0A310STH6   Q16JD4   B4NGT1   A0A0L7K3D6   B3LZD1   A0A1W4VPW9   A0A2R7VSQ0   A0A1B6E351   A0A1J1I8C3   B4HZN4   B4PLT9   B3P7X1   Q9VA95   A0A023EGF8   A0A1I8MVN6   B4M6D5   B4JEM6   A0A1I8P8I8   A0A2H8TJS3   B4K9T4   B0X1W1   A0A023EGJ8   A0A0M4ETM4   A0A1Q3FCX1   A0A0K8VHZ7   B4GNP7   Q29C23   A0A0K8TSY6   A0A224XZE7   A0A069DPA9   A0A0V0G8I1   A0A3B0K6U4   A0A1Y1M7T7   A0A0L0BXW8   A0A1Y1MBR8   A0A164ZZ54   A0A0N7Z9E5   R4FPI5   A0A1S3CVI8   A0A0P5RIC5   A0A154PSN6   A0A1B0GAB8   A0A1A9VTB7   A0A1A9ZG74   A0A3B1IL00  

Pubmed

19121390    22651552    26354079    23622113    22118469    18362917    + More
19820115    29403074    22516182    23537049    24845553    12364791    14747013    17210077    24438588    20920257    21719571    21347285    21282665    28648823    20075255    20966253    20798317    26823975    20566863    24508170    30249741    17510324    17994087    26227816    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24945155    26483478    25315136    15632085    23185243    26369729    26334808    28004739    26108605    27129103    25329095   

EMBL

BABH01038367    DQ311320    ABD36264.1    AK401890    KQ459011    BAM18512.1    + More
KPJ04376.1    RSAL01000033    RVE51450.1    KQ460500    KPJ14255.1    ODYU01012243    SOQ58449.1    GDQN01009656    JAT81398.1    GAIX01009052    JAA83508.1    NWSH01003523    PCG66171.1    AGBW02014704    OWR41165.1    DS497730    EFA12998.1    PYGN01000959    PSN38902.1    APGK01043587    BT128359    KB741015    KB632237    AEE63317.1    ENN75334.1    ERL90477.1    AXCM01000075    KK852992    KDR12762.1    GGFM01008005    MBW28756.1    AAAB01008811    EAA04896.4    GGFK01012632    MBW45953.1    GGFJ01010397    MBW59538.1    ATLV01023319    KE525342    KFB48882.1    LJIG01009246    KRT83464.1    GGFL01004326    MBW68504.1    GL888740    EGI58211.1    ADTU01000550    KQ976423    KYM88883.1    KQ978339    KYM95017.1    GL762905    EFZ20510.1    KQ983128    KYQ47221.1    NNAY01002755    OXU20624.1    KQ414681    KOC63988.1    APCN01004772    KQ978986    KYN26729.1    GL438658    EFN68670.1    GDHC01014387    JAQ04242.1    DS235250    EEB13936.1    GL449942    EFN81776.1    AXCN02001427    UFQS01000542    UFQT01000542    SSX04737.1    SSX25100.1    KZ288301    PBC28837.1    KK107555    QOIP01000002    EZA49015.1    RLU26167.1    UFQT01001948    SSX32219.1    KQ760545    OAD59973.1    CH478014    EAT34381.1    CH964272    EDW84428.1    JTDY01014712    KOB52002.1    CH902617    EDV44110.1    KK854003    PTY08985.1    GEDC01004945    JAS32353.1    CVRI01000039    CRK94665.1    CH480819    EDW53491.1    CM000160    EDW99076.1    CH954182    EDV53098.1    AE014297    BT100282    KX531292    AAF57019.1    ACY79577.1    ANY27102.1    JXUM01036886    GAPW01005673    KQ561109    JAC07925.1    KXJ79677.1    CH940652    EDW59211.1    CH916369    EDV93157.1    GFXV01002560    MBW14365.1    CH933806    EDW14559.1    DS232272    EDS38891.1    GAPW01005674    JAC07924.1    CP012526    ALC46242.1    GFDL01009693    JAV25352.1    GDHF01013832    JAI38482.1    CH479186    EDW39373.1    CM000070    EAL26823.1    KRS99582.1    KRS99583.1    GDAI01000357    JAI17246.1    GFTR01002444    JAW13982.1    GBGD01003368    JAC85521.1    GECL01001642    JAP04482.1    OUUW01000041    SPP89937.1    GEZM01038146    JAV81764.1    JRES01001168    KNC24846.1    GEZM01038145    JAV81765.1    LRGB01000687    KZS16976.1    GDKW01000771    JAI55824.1    ACPB03010305    GAHY01000864    JAA76646.1    GDIQ01100362    JAL51364.1    KQ435169    KZC14935.1    CCAG010002699   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000218220    UP000007151    + More
UP000007266    UP000245037    UP000019118    UP000030742    UP000075883    UP000075920    UP000027135    UP000069272    UP000075881    UP000075900    UP000007062    UP000075885    UP000075880    UP000030765    UP000075884    UP000007755    UP000005205    UP000078540    UP000078542    UP000075809    UP000215335    UP000002358    UP000053825    UP000076407    UP000075903    UP000075902    UP000075840    UP000075882    UP000078492    UP000000311    UP000009046    UP000008237    UP000075886    UP000242457    UP000005203    UP000053097    UP000279307    UP000008820    UP000007798    UP000037510    UP000007801    UP000192221    UP000183832    UP000001292    UP000002282    UP000008711    UP000000803    UP000069940    UP000249989    UP000095301    UP000008792    UP000001070    UP000095300    UP000009192    UP000002320    UP000092553    UP000008744    UP000001819    UP000268350    UP000037069    UP000076858    UP000015103    UP000079169    UP000076502    UP000092444    UP000078200    UP000092445    UP000018467   

PRIDE

H9IY86    Q2F5V3    Q9VA95   

Pfam

PF04099   Sybindin        + More
PF00226   DnaJ

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR007233   TRAPPC       
IPR036869   J_dom_sf       
IPR018253   DnaJ_domain_CS       
IPR001623   DnaJ_domain       

SUPFAM

SSF64356   SSF64356        + More
SSF46565   SSF46565       

Gene 3D

1.10.287.110    

CDD

cd06257  DnaJ

ProteinModelPortal

H9IY86   Q2F5V3   I4DKS2   A0A3S2M5I6   A0A194RAF2   A0A2H1WZD2   + More
A0A1E1W338   S4P4F9   A0A2A4J2E0   A0A212EI62   D7EK51   A0A2P8Y3Q6   J3JYN0   A0A182MJY3   A0A182WAR4   A0A067R1K4   A0A1Y9G9I8   A0A182K5G4   A0A2M3ZJQ1   A0A182R2R5   Q7PSX5   A0A2M4AYT3   A0A2M4C3F6   A0A182P5M5   A0A182J8K3   A0A084WF88   A0A0T6B7X3   A0A182PKY8   A0A2K6VB79   A0A182NC46   F4X5R0   A0A158NY34   A0A195BQL2   A0A151I8R4   E9IG03   A0A151WHB0   A0A232EQI6   K7INE1   A0A0L7QZG4   A0A182XNF9   A0A182V7D8   A0A182U366   A0A182IDR1   A0A182LIF6   A0A151JLP8   E2AD34   A0A146LAV0   E0VKN0   E2BRB3   A0A182QAA3   A0A336KJX7   A0A2A3EAT0   A0A088AES0   A0A026VZB0   A0A336MSZ6   A0A310STH6   Q16JD4   B4NGT1   A0A0L7K3D6   B3LZD1   A0A1W4VPW9   A0A2R7VSQ0   A0A1B6E351   A0A1J1I8C3   B4HZN4   B4PLT9   B3P7X1   Q9VA95   A0A023EGF8   A0A1I8MVN6   B4M6D5   B4JEM6   A0A1I8P8I8   A0A2H8TJS3   B4K9T4   B0X1W1   A0A023EGJ8   A0A0M4ETM4   A0A1Q3FCX1   A0A0K8VHZ7   B4GNP7   Q29C23   A0A0K8TSY6   A0A224XZE7   A0A069DPA9   A0A0V0G8I1   A0A3B0K6U4   A0A1Y1M7T7   A0A0L0BXW8   A0A1Y1MBR8   A0A164ZZ54   A0A0N7Z9E5   R4FPI5   A0A1S3CVI8   A0A0P5RIC5   A0A154PSN6   A0A1B0GAB8   A0A1A9VTB7   A0A1A9ZG74   A0A3B1IL00  

PDB

2J3T     E-value=1.06444e-43,     Score=438

KEGG

692910    K20300 trafficking protein particle complex subunit 1 | (RefSeq) trafficking protein particle comple

GO

GO:0016192   GO:0030008   GO:0006888   GO:0005737   GO:0017112   GO:0006810   GO:0008270   GO:0003676   GO:0005515   GO:0051103   GO:0005524   GO:0042555   GO:0048384  

PANTHER

PTHR23249  

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00718

Exp number, first 60 AAs:

0.0068

Total prob of N-in:

0.14178

outside

1  -  145

 

 

Pi

13.280932

Theta

11.739468

Tajima's D

0.545914

CLR

0

CSRT

0.541972901354932

Interpretation

Uncertain