SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03675
Pre Gene Modal
BGIBMGA002220
Annotation
PREDICTED:_spindle_pole_body_component_110_[Amyelois_transitella]
Location
Bomo_Chr6(-):15325369-15333929      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.009
 

Sequence

CDS
ATGAGTGATACTGACGACACGGACGTACTTTTATTGATACCACCGAATTTCTTCCTCGTTGAGAGTTCAGAATCCGAAGATTCCCTCCTGAAATCTTCTAGAACGGTCGTACATAAACCTTTATCGTGTACAGCACAAGTTCTCGACAAATTAGTTACACAAGTTCACACTTTGGAATCACGGTTAGAAAACTTGGAAATTAGCAGTGATATTTCTACAATTGAGTCTCGTTCAAAACGAAACACAACCTGGATAAGTACAGACAGCTTTGATAGTCGTAGCTTAAACAGAAATTGCTTCACTTTCCCACGTCGGCGGCGACGAAAAGTACCTAAACGCGGTAGGCAAAGAGAGCGATCTTTAACTAGTTTGGACTCAATTAATAGCGCAGGAAGAAACGTGCCACCTTTAAAATTAACGACAGAATCTACTCCTGATGTCAAATATCTCGACATCCACGAAATTCAAAGCATGGATGGGGATATCAGTAGTATTGTATCAACTCCTAGTAAAACCAATGATAAACTATTACTCAATGAAATTGATGAGTTTTTAACAAAAGTAGAATCATATGAAAGTCCCGAGTCCAAATACAAGAGTCATGAAATGACTTTGTGCACTGAAAATGTGATAAAAGCTACAAGTGATTACCTTTCACAAAAACTAGATTCAAATGAAGAAATCAAACTGCCCAGCGGACGCGTGGTCTCCAGTAGTGTTTTAGATAAATATATTTATTTGGTTAAAAACAACTTGCCAACTAATTCTGAACAGTCACCTTCAAGTTCAAAAAACACAGTCAAAAGCTACGAGAACTCCAACACTACTAATGAAGTATCAAATACTGTCCAGACAAAGTCACCTAGTGCACGGAAATTAAATTTCGACAAAGAGTTTCAGCCTACATCAACACCAAACAAGCAGCAAACGACATACAATAGTTTTCAGCCTTCCTCAAATAAAATATATGACAGAGCATCAAGAGTCTTAGAACAATATAAGGCAAGTTACAGTAAAAATAAACCAGGTGCTACAGATAGCTACTCCGCATCTTCAAACCAGGAGCTCAAATTACCCGAAATGAGACCTTTTGGAGAAAACAGAGAAAGCTTAAAGTTCATACAGAATAAATATATTGATACCATCGACTCAGATTTGTTGAGTTTGAGTGAGTTGTGGGGTGATAAGGCAGAAAGGACTACAGGGTACAACAGGGGTGATAAAGTGGACATTATAAAGCTGGAAGAAGAAAGACTAAAAAGGGAGCACTGTGAAGCAATGATTCAGCAGTTACAGAAGAAACTACTCGATCAGCAGGAAAAATTAGCAGTGGCCATGAAAGTGGATCGTGCAAAAGATGCTGCTATATCTAAATTACGTGAGGCCTGGCTCCGACTAACCAACAGCCTTGACAGAGCTGAGGACAGACACCGGAAAGCGTTAGAAAAGATGATCTGTGAAGTAGAAAATTTTAGAGTTGTTGCTGATGATGCTCAAAAGAAAACATCACATTTTGAATCAGAGTTATACAAAACATTGGACTTAGCACATGACTATCAAGATAAATGTAAACAGCTCCAAAACGAAAAGAAGTCTCTAGAAGAACAACTCAACACTGAGCTAGATAACGTGAATGTCATGCTCAGCAATAAGGATAAAGAAATTGACGTCTTGAAGGAGAATTATGATACTGTCATGAGACTCAACAAGCAGTTGACGGATTGTGTTAAGAATTTAGAGGAAGCTTTGGAGAAGGAAAAATTTGCCCATGACTCCACAAAATCAAACATAACAGAACTCAACAAACGAATACAGAGTGTCAATGATGAGACATTGCTACTAACTCAAGAACGAGATCTGCTCAAAAGCAAAGTGAATGAAGAGAGATCACGCTGTGCAGTGATCGAGCAACAGCTCTGTGAGAAACAGAACCAGTGCAGTGAAGTTTTGAAGAAGTGTGATTTTTTAGACAACGAGGTGAAAACGTTACGCCAGCATTTAGAACTGCAAAAGAACGAGCTGAAATGTCATTACCAGAAGCAGCTTGAAGATGCCGTGCTGGCCAAGCTGCAGGAGTTTCAAGAGCAGCTCGATCGAGCAGAGAGGGAGATGGAGAACGATGCGAGGTTAAAGGAGAACAACATTGTGGATAGTTTTAACAAGCAAATATTAAGGATAGAAGAGCAGCATAAATTGGAGATCAACGTCTTAGAAGAGAAGCAGAGAGAGGAGATCAAACTGTACCGTCTGCAACTGGCGCAGGCCGCGGAGAAACTAGGATTGTTAGAGAGTAAGGTGGAGTGTCAGAGGCGGCGGCGCGGCGAGACGGCGGCCCGTCTGCACGCCGCCCTGCAGGCGCACTGGAGGCACGCGCTCCGCATACTGGCCGCCCCGCACCACGACCTCGCATCAACACCGCTACCACAGGACGTTGTCCCTCCGCTGTCGATGTCCTCCGTGACGGACCGCGGCCTCGCGCGACAGAAGGACCCACCCACAAGGAAACACTCAGACGAGTTCAACTTTGAAGGACTCAGTGAAGAGGAACTTCAACATTACATCAAAATGTTATTGGTGAAACCTCCGAGTGCAGAGGAGGCGCCGCCCCCCGCGCTTCCCGCGGACGAGGAGCAGCCCACCAGCGACCGCCCGGAGCGCCTCGACAGGAGGGACAGGAGCGCTAAGCGATGCCTCGGCAACAAGCCCCCCTGGAAGGCGTGA
Protein
MSDTDDTDVLLLIPPNFFLVESSESEDSLLKSSRTVVHKPLSCTAQVLDKLVTQVHTLESRLENLEISSDISTIESRSKRNTTWISTDSFDSRSLNRNCFTFPRRRRRKVPKRGRQRERSLTSLDSINSAGRNVPPLKLTTESTPDVKYLDIHEIQSMDGDISSIVSTPSKTNDKLLLNEIDEFLTKVESYESPESKYKSHEMTLCTENVIKATSDYLSQKLDSNEEIKLPSGRVVSSSVLDKYIYLVKNNLPTNSEQSPSSSKNTVKSYENSNTTNEVSNTVQTKSPSARKLNFDKEFQPTSTPNKQQTTYNSFQPSSNKIYDRASRVLEQYKASYSKNKPGATDSYSASSNQELKLPEMRPFGENRESLKFIQNKYIDTIDSDLLSLSELWGDKAERTTGYNRGDKVDIIKLEEERLKREHCEAMIQQLQKKLLDQQEKLAVAMKVDRAKDAAISKLREAWLRLTNSLDRAEDRHRKALEKMICEVENFRVVADDAQKKTSHFESELYKTLDLAHDYQDKCKQLQNEKKSLEEQLNTELDNVNVMLSNKDKEIDVLKENYDTVMRLNKQLTDCVKNLEEALEKEKFAHDSTKSNITELNKRIQSVNDETLLLTQERDLLKSKVNEERSRCAVIEQQLCEKQNQCSEVLKKCDFLDNEVKTLRQHLELQKNELKCHYQKQLEDAVLAKLQEFQEQLDRAEREMENDARLKENNIVDSFNKQILRIEEQHKLEINVLEEKQREEIKLYRLQLAQAAEKLGLLESKVECQRRRRGETAARLHAALQAHWRHALRILAAPHHDLASTPLPQDVVPPLSMSSVTDRGLARQKDPPTRKHSDEFNFEGLSEEELQHYIKMLLVKPPSAEEAPPPALPADEEQPTSDRPERLDRRDRSAKRCLGNKPPWKA

Summary

Uniprot
H9IY87   A0A2A4ISC3   A0A2H1WZK4   A0A194REA2   A0A194QHG4   A0A0L7KUE8   + More
A0A212EI57  
Pubmed
19121390    26354079    26227816    22118469   
EMBL
BABH01038367    NWSH01008150    PCG62675.1    ODYU01012243    SOQ58448.1    KQ460500    + More
KPJ14256.1    KQ459011    KPJ04375.1    JTDY01005518    KOB66922.1    AGBW02014704    OWR41164.1   
Proteomes
UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More
PRIDE
H9IY87   
Interpro
IPR038923   Centrobin       
ProteinModelPortal
H9IY87   A0A2A4ISC3   A0A2H1WZK4   A0A194REA2   A0A194QHG4   A0A0L7KUE8   + More
A0A212EI57  
PDB
5TBY     E-value=0.0383475,     Score=90

Ontologies

KEGG
101736003    no KO assigned | (RefSeq) GRIP and coiled-coil domain-containing protein 2
GO
GO:1902017   GO:0007099  
PANTHER
PTHR34439  

Topology

Length:
906
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00034
Exp number, first 60 AAs:
0.00034
Total prob of N-in:
0.00004
outside
1  -  906
 
 

Population Genetic Test Statistics

Pi
20.306464
Theta
15.318101
Tajima's D
0.804337
CLR
1.120376
CSRT
0.618869056547173
Interpretation
Uncertain
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