Gene

KWMTBOMO03667  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002209

Annotation

ras-related_GTP-binding_protein_Rab11_[Bombyx_mori]

Location

Bomo_Chr6(+):15232620-15242433      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.472

CDS

ATGGGCACAAGAGAGGATGAATATGATTATTTGTTCAAAGTTGTACTCATTGGAGATTCTGGTGTGGGTAAAAGCAGTCTTCTGTCGCGTTTCACTAGAAATGAATTCAATTTAGAATCTAAATCTACCATAGGTGTGGAATTTGCAACAAGAAGTATAGAGGTCGACGGTAAGACCATAAAAGCTCAGATATGGGACACGGCCGGCCAGGAGCGGTACCGCGCCATCACGTCGGCGTACTACCGCGGCGCGGTGGGCGCGCTGCTGGTTTACGACATCGCCAAGCACCTGTCGTACGAGAACGTGGAGCGATGGCTGCGCGAGCTGCGCGACCACGCCGACCAGAACATCCTCATCATGCTGGTCGGCAACAAGAGCGATCTCAGGCATCTTAGGTCCATCCCGACGGAGGAGGCGAAAGCGTTCGCGGAAGCCAACGGACTTAGTTTTATCGAGACGTCGGCCCTGGACTCTACCAACGTCGAGCCGGCCTTCCAGAACATTCTGACCGAGATCTACAGGATCGTGTCGCAGCGGCAGATGCGCGACCCGCCCGAGGGTGACGTCATCCGGCCCGACGCCGAGCCCGCCGACGTGCGGCCCTCGCAGGCCGACAGTGTGCGGCGCCAGTGCTGCCAGTAG

Protein

MGTREDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDPPEGDVIRPDAEPADVRPSQADSVRRQCCQ

Uniprot

Q19KB8   A0A3S2LDL4   A0A194RAG2   A0A194QFV2   A0A212EI71   A0A0L7L270   + More
S4PZU9   A0A0A1WQM4   W8BFR1   A0A034W956   A0A0C9QU97   A0A0K8W7Q9   A0A0K8TQ07   Q296V6   B4GEK9   B4PQA9   B4IKK8   B4JFI8   B3P059   B4KDL7   O18335   B4LWU9   A0A1L8DV16   A0A1L8EIX7   A0A1L8EIZ3   T1PFP2   A0A1I8NXY0   A0A1L8EIY4   B4NH56   A0A1L8EIT8   A0A1W4VLP8   T1DEZ4   A0A1Q3F884   B0WAH8   A0A1B0G9K1   A0A1A9ZUJ7   A0A1A9W9E2   Q1HQR4   A0A023EJT5   A0A067R8L1   A0A0L0CJI8   Q8IGH2   A0A3B0KBC0   A0A1L8EBL2   B8A3X3   A0A165VFW4   U5EX04   T1E8Q6   A0A182Y8M0   A0A2M3Z3X6   A0A2M4ACV8   A0A182MWQ4   A0A182SK76   A0A182QPR2   A0A182VC01   W5JI85   A0A182X2J7   A0A182KZF0   A7UT37   A0A182HYU0   A0A087ZNX0   V9I9F9   A0A1L8EJ11   A0A0P6IKG6   A0A232F2L7   K7J2T3   A0A3L8D9W0   A0A310S8C9   A0A1B6E097   A0A026WYQ3   A0A195C4L0   A0A1L8ECA6   A0A154PBP8   R4UW51   A0A195BXL3   A0A158NI37   A0A0L7RAQ9   A0A0J7KI67   E2BAK9   E2A5Q1   A0A0A9XW64   J3JV86   A0A0T6BA32   A0A1W4WT50   Q6PPH1   A0A1B6EXL9   A0A1B6K3S5   T1D4N4   A0A1Y1K2P5   A0A224XSL3   A0A0P4VT08   A0A069DXD4   R4G4K8   A6YPR1   A0A182JKW5   A0A1J1HJY1   A0A2J7RE94   E7DQN7   W8C223   A0A2S2PYT0  

Pubmed

19121390    26354079    22118469    26227816    23622113    25830018    + More
24495485    25348373    26369729    15632085    17994087    17550304    18057021    9074639    9197407    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    24330624    17204158    17510324    24945155    26483478    24845553    26108605    25244985    20920257    23761445    20966253    12364791    14747013    17210077    28648823    20075255    30249741    24508170    21347285    20798317    25401762    22516182    23537049    28004739    27129103    26334808    18207082    21445257   

EMBL

BABH01038377    BABH01038378    BABH01038379    DQ525202    ABF71467.1    RSAL01000033    + More
RVE51445.1    KQ460500    KPJ14265.1    KQ459011    KPJ04367.1    AGBW02014704    OWR41161.1    JTDY01003458    KOB69525.1    GAIX01000908    JAA91652.1    GBXI01012963    GBXI01009057    JAD01329.1    JAD05235.1    GAMC01010773    GAMC01010772    GAMC01010770    JAB95783.1    GAKP01008644    JAC50308.1    GBYB01004232    JAG73999.1    GDHF01010395    GDHF01005225    JAI41919.1    JAI47089.1    GDAI01001385    JAI16218.1    CM000070    EAL28351.1    CH479182    EDW34044.1    CM000160    EDW96218.2    CH480853    EDW51612.1    CH916369    EDV93469.1    CH954181    EDV48295.1    CH933806    EDW13851.1    KRG00673.1    AE014297    AY070528    AY113404    D84315    AB035354    AAF55850.1    AAL47999.1    AAM29409.1    AAN13849.1    BAA21708.1    BAA87880.1    CH940650    EDW66670.1    KRF82851.1    GFDF01003800    JAV10284.1    GFDG01000181    JAV18618.1    GFDG01000185    JAV18614.1    KA646723    AFP61352.1    GFDG01000184    JAV18615.1    CH964272    EDW84553.1    GFDG01000182    JAV18617.1    GALA01000852    JAA94000.1    GFDL01011298    JAV23747.1    DS231872    EDS41401.1    CCAG010015406    DQ440380    CH477573    ABF18413.1    EAT38832.1    JXUM01113767    JXUM01113768    JXUM01113769    JXUM01113770    GAPW01004266    KQ565724    JAC09332.1    KXJ70734.1    KK852626    KDR19906.1    JRES01000301    KNC32578.1    BT001785    AAN71540.1    OUUW01000007    SPP83409.1    GFDG01002803    JAV15996.1    BT056265    ACL68712.1    KT984798    AMZ00350.1    GANO01001172    JAB58699.1    GAMD01002563    JAA99027.1    GGFM01002471    MBW23222.1    GGFK01005305    MBW38626.1    AXCM01000458    AXCN02001200    ADMH02001458    GGFL01004214    ETN62489.1    MBW68392.1    AAAB01008898    EAA44610.3    EAU76886.3    EAU76888.3    EAU76889.3    EGK97198.1    EGK97200.1    EGK97201.1    EGK97202.1    EGK97203.1    EGK97204.1    APCN01005408    JR037338    JR037339    JR037340    AEY57724.1    AEY57725.1    AEY57726.1    GFDG01000183    JAV18616.1    GDIQ01003485    JAN91252.1    NNAY01001153    OXU24971.1    QOIP01000011    RLU16932.1    KQ771982    OAD52511.1    GEDC01029871    GEDC01020444    GEDC01005958    JAS07427.1    JAS16854.1    JAS31340.1    KK107078    EZA60274.1    KQ978292    KYM95545.1    GFDG01002432    JAV16367.1    KQ434857    KZC08834.1    KC571967    AGM32466.1    KQ976398    KYM92686.1    ADTU01001771    ADTU01001772    ADTU01001773    ADTU01001774    KQ414618    KOC67923.1    LBMM01007220    KMQ89934.1    GL446779    EFN87269.1    GL437023    EFN71248.1    GBHO01019460    GBRD01017483    GBRD01006715    JAG24144.1    JAG48344.1    APGK01043768    BT127153    KB741017    KB631644    AEE62115.1    ENN75265.1    ERL84949.1    LJIG01009102    KRT83751.1    AY588075    AAT01087.1    GECZ01027102    JAS42667.1    GECU01001597    JAT06110.1    GALA01000878    JAA93974.1    GEZM01098436    GEZM01098435    JAV53885.1    GFTR01003618    JAW12808.1    GDKW01000961    JAI55634.1    GBGD01002880    JAC86009.1    ACPB03002122    GAHY01000686    JAA76824.1    EF639072    ABR27957.1    CVRI01000006    CRK88227.1    NEVH01005277    PNF39153.1    HQ315779    ADT91500.1    GAMC01010771    JAB95784.1    GGMS01001317    MBY70520.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000001819    UP000008744    UP000002282    UP000001292    UP000001070    UP000008711    UP000009192    UP000000803    UP000008792    UP000095301    UP000095300    UP000007798    UP000192221    UP000002320    UP000092444    UP000092445    UP000091820    UP000008820    UP000069940    UP000249989    UP000027135    UP000037069    UP000268350    UP000076408    UP000075883    UP000075901    UP000075886    UP000075903    UP000000673    UP000076407    UP000075882    UP000007062    UP000075840    UP000005203    UP000215335    UP000002358    UP000279307    UP000053097    UP000078542    UP000076502    UP000078540    UP000005205    UP000053825    UP000036403    UP000008237    UP000000311    UP000019118    UP000030742    UP000192223    UP000015103    UP000075880    UP000183832    UP000235965   

PRIDE

Q19KB8    B4PQA9    O18335    B4NH56    B0WAH8    Q1HQR4    + More
Q8IGH2    B8A3X3    K7J2T3    E2BAK9    E2A5Q1    Q6PPH1    A6YPR1    E7DQN7   

Pfam

PF00071   Ras        + More
PF04427   Brix

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR007109   Brix       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

Q19KB8   A0A3S2LDL4   A0A194RAG2   A0A194QFV2   A0A212EI71   A0A0L7L270   + More
S4PZU9   A0A0A1WQM4   W8BFR1   A0A034W956   A0A0C9QU97   A0A0K8W7Q9   A0A0K8TQ07   Q296V6   B4GEK9   B4PQA9   B4IKK8   B4JFI8   B3P059   B4KDL7   O18335   B4LWU9   A0A1L8DV16   A0A1L8EIX7   A0A1L8EIZ3   T1PFP2   A0A1I8NXY0   A0A1L8EIY4   B4NH56   A0A1L8EIT8   A0A1W4VLP8   T1DEZ4   A0A1Q3F884   B0WAH8   A0A1B0G9K1   A0A1A9ZUJ7   A0A1A9W9E2   Q1HQR4   A0A023EJT5   A0A067R8L1   A0A0L0CJI8   Q8IGH2   A0A3B0KBC0   A0A1L8EBL2   B8A3X3   A0A165VFW4   U5EX04   T1E8Q6   A0A182Y8M0   A0A2M3Z3X6   A0A2M4ACV8   A0A182MWQ4   A0A182SK76   A0A182QPR2   A0A182VC01   W5JI85   A0A182X2J7   A0A182KZF0   A7UT37   A0A182HYU0   A0A087ZNX0   V9I9F9   A0A1L8EJ11   A0A0P6IKG6   A0A232F2L7   K7J2T3   A0A3L8D9W0   A0A310S8C9   A0A1B6E097   A0A026WYQ3   A0A195C4L0   A0A1L8ECA6   A0A154PBP8   R4UW51   A0A195BXL3   A0A158NI37   A0A0L7RAQ9   A0A0J7KI67   E2BAK9   E2A5Q1   A0A0A9XW64   J3JV86   A0A0T6BA32   A0A1W4WT50   Q6PPH1   A0A1B6EXL9   A0A1B6K3S5   T1D4N4   A0A1Y1K2P5   A0A224XSL3   A0A0P4VT08   A0A069DXD4   R4G4K8   A6YPR1   A0A182JKW5   A0A1J1HJY1   A0A2J7RE94   E7DQN7   W8C223   A0A2S2PYT0  

PDB

5FBQ     E-value=5.03269e-96,     Score=893

KEGG

733063    K07904 Ras-related protein Rab-11A | (RefSeq) Rab11; ras-related GTP-binding protein Rab11

GO

GO:0005525   GO:0003924   GO:0005813   GO:0032127   GO:0030140   GO:0060187   GO:0048137   GO:0032794   GO:0051642   GO:0007112   GO:0048471   GO:0031532   GO:0043195   GO:0019730   GO:0042078   GO:0048210   GO:0030718   GO:0044877   GO:0007394   GO:0007317   GO:0042052   GO:0070732   GO:0007349   GO:0055037   GO:0005635   GO:0007298   GO:0045169   GO:0045886   GO:0005794   GO:0048488   GO:0008103   GO:0032482   GO:0030723   GO:0034334   GO:0000916   GO:0016360   GO:0022416   GO:0046664   GO:0005776   GO:1990182   GO:0032456   GO:0042998   GO:0032154   GO:0072657   GO:0030866   GO:0005768   GO:0006897   GO:0005737   GO:0016192   GO:0048749   GO:0043025   GO:0050807   GO:0031410   GO:0045202   GO:0030707   GO:0007391   GO:0005886   GO:0048599   GO:0001745   GO:0031982   GO:0045478   GO:0006886   GO:0006887   GO:0007264   GO:0008270   GO:0003676   GO:0005515   GO:0051103   GO:0005524   GO:0042555   GO:0048384  

Length:

213

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15159

Exp number, first 60 AAs:

0.03938

Total prob of N-in:

0.20393

outside

1  -  213

 

 

Pi

2.214675

Theta

18.309591

Tajima's D

-1.027738

CLR

11.405099

CSRT

0.132843357832108

Interpretation

Uncertain