Gene

KWMTBOMO03664

Annotation

PREDICTED:_zinc_finger_protein_235-like_[Bombyx_mori]

Location

Bomo_Chr6(+):15192800-15195489      View in EpiBrowser

Full name

Zinc finger protein 628      

Alternative Name

Zinc finger protein expressed in embryonal cells and certain adult organs

Transcription factor

zf-C2H2

Location in the cell

Mitochondrial   Reliability : 1.275 Nuclear   Reliability : 1.913

CDS

ATGCGCACGCACACGGGCGAGCGACCCTTCCAGTGTCCGGACTGCCCCAAGGGCTTCGTCAAGCAGTCCTCACTCAAGAGCCACTCGACGGTGCACACGAGCGAGCGATCGTTCGCCTGCGAGCTCTGTCCCAAGACCTTCAAGTGGCGGTCCGGTCTGCGCACCCATCAACAAACCGTACATTTTGGTATAAAACTTCCTGCCAGAAGAAAAAACCAACCTCAAGTCGCAGTTCCAACGATTTTCTGA

Protein

MRTHTGERPFQCPDCPKGFVKQSSLKSHSTVHTSERSFACELCPKTFKWRSGLRTHQQTVHFGIKLPARRKNQPQVAVPTIF

Description

Transcription activator. Binds DNA on GT-box consensus sequence 5'-TTGGTT-3'.
Transcription activator. Binds DNA on GT-box consensus sequence 5'-TTGGTT-3' (By similarity).

Keywords

Alternative splicing   Complete proteome   DNA-binding   Metal-binding   Nucleus   Phosphoprotein   Reference proteome   Repeat   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Zinc finger protein 628
splice variant  In isoform 2.

Uniprot

H9IY74   A0A0L7KU31   A0A1S3WDQ9   A0A131Y7M8   A0A3B3VEN3   A0A3P8QSX9   + More
A0A3B5LEA9   A0A3P9N258   F7AX10   A0A0K8RNH0   F7AX04   M4B041   H2LRX9   A0A2D0RS12   A0A131XVA0   A0A3B3WTN9   A0A146RAN4   A0A1S3GME0   A0A3P9MXE9   A0A2D4KJD3   A0A2D4KJD7   A0A224ZCC2   A0A3B4EKJ2   A0A286XC32   A0A1S3RZ37   L9KPP2   A0A060VXR1   Q4T8D2   A0A1S3PW73   A0A2Y9GFQ5   F1ML21   A0A131Y6Q0   A0A1B6IPL3   A0A2B4S713   A0A2U3ZLM6   A0A3M6TKD3   A0A131XV23   A0A131Y2S4   A0A1S3WDL6   V5I4B9   A0A3B3BP63   A0A3P9I7C9   A0A3Q3G4K6   A0A1S3AI42   A0A3B5JZZ4   A0A2K6M1J6   A0A3B5KAY9   A0A147BF01   A0A384A281   F6V0G1   A0A2U3YYR1   A0A146QIW3   A0A3Q1IJS8   A0A1S3SJW8   A0A2D4LWM7   W5NT75   A0A1U7R272   A0A147BF03   A0A2R9AXE0   L5KCU4   Q8CJ78   A0A3P8P0U0   A0A3Q1HJQ5   G1P722   V5IET8   A0A2I0T6I1   A0A383ZKA9   F7GJE6   A0A2K6QUX0   A0A3Q7RFR5   A0A3B4GSX1   A0A2R8M2R2   A0A2K6DHT8   A0A1W4Y7M8   A0A1W4YHA6   W5LJQ6   A0A2K6QV06   A0A1S3NAB3   A0A2J8IWS7   A0A2J8IWS8   A0A2I3TEI2   A0A087WSX5   H0XIR8   F1SS53   A0A2J8R3G3   A0A1D5QGJ5   A0A0A0MU01   Q5EBL2   A0A2K5QIN9   G1RHV2   A0A3Q7V5A6   A0A146QIU8   G3S3A2   A0A2K5NER9   A0A0D9SE62   A0A2J8R3E3   A0A2Y9IH32   A0A3Q2VGA9  

Pubmed

19121390    26227816    20431018    23542700    17554307    28797301    + More
21993624    23385571    24755649    15496914    19393038    30382153    25765539    29451363    21551351    29652888    17495919    20809919    22722832    23258410    15556296    16141072    15489334    17431167    25362486    25329095    16136131    15057824    23186163   

EMBL

BABH01038386    BABH01038387    BABH01038388    BABH01038389    JTDY01005793    KOB66620.1    + More
GEFM01001304    JAP74492.1    AAMC01062641    AAMC01062642    GADI01001345    JAA72463.1    GEFM01006295    JAP69501.1    GCES01120940    JAQ65382.1    IACL01072278    LAB08794.1    IACL01072281    LAB08798.1    GFPF01013534    MAA24680.1    AAKN02046214    KB320717    ELW64756.1    FR904333    CDQ59788.1    CAAE01007830    CAF90850.1    GEFM01001624    JAP74172.1    GECU01018863    JAS88843.1    LSMT01000179    PFX24338.1    RCHS01003437    RMX41806.1    GEFM01006290    JAP69506.1    GEFM01003605    JAP72191.1    GANP01001380    JAB83088.1    GEGO01006037    JAR89367.1    GCES01130545    JAQ55777.1    IACM01045508    LAB25507.1    AMGL01029757    AMGL01029758    AMGL01029759    AMGL01029760    GEGO01006392    JAR89012.1    AJFE02020318    AJFE02020319    KB030840    ELK09167.1    AF435832    AK155214    BC056945    BC062973    AAPE02025289    GANP01009612    JAB74856.1    KZ517182    PKU29409.1    JSUE03022374    JSUE03022375    NBAG03000567    PNI14962.1    PNI14963.1    AACZ04002217    AC008735    AAQR03181554    AEMK02000082    NDHI03003771    PNJ03061.1    AHZZ02014979    BC047332    BC089449    ADFV01100199    GCES01130299    JAQ56023.1    CABD030114970    CABD030114971    AQIB01135263    PNJ03059.1   

Proteomes

UP000005204    UP000037510    UP000079721    UP000261500    UP000265100    UP000261380    + More
UP000242638    UP000008143    UP000002852    UP000001038    UP000221080    UP000261480    UP000081671    UP000261440    UP000005447    UP000087266    UP000011518    UP000193380    UP000248481    UP000009136    UP000225706    UP000245340    UP000275408    UP000261560    UP000265200    UP000261660    UP000005226    UP000233180    UP000261681    UP000002280    UP000245341    UP000265040    UP000002356    UP000189706    UP000240080    UP000010552    UP000000589    UP000257200    UP000001074    UP000006718    UP000233200    UP000286640    UP000261460    UP000008225    UP000233120    UP000192224    UP000018467    UP000002277    UP000005640    UP000005225    UP000008227    UP000028761    UP000233040    UP000001073    UP000286642    UP000001519    UP000233060    UP000029965    UP000248482    UP000264840   

PRIDE

H9IY74    F1ML21    W5NT75    Q8CJ78    F1SS53    Q5EBL2    + More

Pfam

PF00096   zf-C2H2        + More
PF14291   DUF4371
PF16622   zf-C2H2_11
PF01352   KRAB
PF00530   SRCR
PF02023   SCAN

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR025398   DUF4371       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR041697   Znf-C2H2_11       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
IPR036772   SRCR-like_dom_sf       
IPR001190   SRCR       
IPR017448   SRCR-like_dom       
IPR003309   SCAN_dom       
IPR038269   SCAN_sf       
IPR027764   Zfp18       
IPR017114   YY-1-like       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       
SSF56487   SSF56487       

Gene 3D

3.30.40.180     3.10.250.10     1.10.4020.10    

CDD

cd07765  KRAB_A-box
cd07936  SCAN

ProteinModelPortal

H9IY74   A0A0L7KU31   A0A1S3WDQ9   A0A131Y7M8   A0A3B3VEN3   A0A3P8QSX9   + More
A0A3B5LEA9   A0A3P9N258   F7AX10   A0A0K8RNH0   F7AX04   M4B041   H2LRX9   A0A2D0RS12   A0A131XVA0   A0A3B3WTN9   A0A146RAN4   A0A1S3GME0   A0A3P9MXE9   A0A2D4KJD3   A0A2D4KJD7   A0A224ZCC2   A0A3B4EKJ2   A0A286XC32   A0A1S3RZ37   L9KPP2   A0A060VXR1   Q4T8D2   A0A1S3PW73   A0A2Y9GFQ5   F1ML21   A0A131Y6Q0   A0A1B6IPL3   A0A2B4S713   A0A2U3ZLM6   A0A3M6TKD3   A0A131XV23   A0A131Y2S4   A0A1S3WDL6   V5I4B9   A0A3B3BP63   A0A3P9I7C9   A0A3Q3G4K6   A0A1S3AI42   A0A3B5JZZ4   A0A2K6M1J6   A0A3B5KAY9   A0A147BF01   A0A384A281   F6V0G1   A0A2U3YYR1   A0A146QIW3   A0A3Q1IJS8   A0A1S3SJW8   A0A2D4LWM7   W5NT75   A0A1U7R272   A0A147BF03   A0A2R9AXE0   L5KCU4   Q8CJ78   A0A3P8P0U0   A0A3Q1HJQ5   G1P722   V5IET8   A0A2I0T6I1   A0A383ZKA9   F7GJE6   A0A2K6QUX0   A0A3Q7RFR5   A0A3B4GSX1   A0A2R8M2R2   A0A2K6DHT8   A0A1W4Y7M8   A0A1W4YHA6   W5LJQ6   A0A2K6QV06   A0A1S3NAB3   A0A2J8IWS7   A0A2J8IWS8   A0A2I3TEI2   A0A087WSX5   H0XIR8   F1SS53   A0A2J8R3G3   A0A1D5QGJ5   A0A0A0MU01   Q5EBL2   A0A2K5QIN9   G1RHV2   A0A3Q7V5A6   A0A146QIU8   G3S3A2   A0A2K5NER9   A0A0D9SE62   A0A2J8R3E3   A0A2Y9IH32   A0A3Q2VGA9  

PDB

3W5K     E-value=3.15894e-09,     Score=140

KEGG

101738042    no KO assigned | (RefSeq) zinc finger protein 235-like

GO

GO:0005634   GO:0003676   GO:0008270   GO:0003700   GO:0046872   GO:0003677   GO:0043565   GO:0045893   GO:0045892   GO:0045944   GO:0006355   GO:0016021   GO:0016020   GO:0005044   GO:0000981   GO:0005515   GO:0051103   GO:0005524   GO:0042555   GO:0048384  

PANTHER

PTHR23226:SF190  

Subcellular location

Nucleus  

Length:

82

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.35509

outside

1  -  82

 

 

Pi

5.361141

Theta

15.773279

Tajima's D

-1.637048

CLR

2.737433

CSRT

0.0433478326083696

Interpretation

Uncertain