SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03659
Pre Gene Modal
BGIBMGA002226
Annotation
olfactory_receptor-4_[Bombyx_mori]
Full name
Odorant receptor      
Location in the cell
Extracellular   Reliability : 1.733 Nuclear   Reliability : 1.229
 

Sequence

CDS
ATGTGTGTGCGGGCCGCGTCAAGTGACAAACTCCAAGATGCAGTGTACTGCGTGCCGTGGGAATACATGGATACATGTCACAGGAAGATGGTGTACATGATGTTCAGACAGTCGCAGATACCATTGCAGTTGAAGGCTATGAACATGTTGAGCATAGGCGTCAAAACTATGGTATCGATATTGAAGACGTCTGTAACGTACTACCTTATCTTAAAAACAGTTACGACCGACGAAGCTTAA
Protein
MCVRAASSDKLQDAVYCVPWEYMDTCHRKMVYMMFRQSQIPLQLKAMNMLSIGVKTMVSILKTSVTYYLILKTVTTDEA

Summary

Similarity
Belongs to the insect chemoreceptor superfamily. Heteromeric odorant receptor channel (TC 1.A.69) family.
EMBL
AJ874108    CAI43912.1    BABH01038394    AB186507    BAD89569.1    AJ874109    + More
CAI43913.1    BABH01038399    KJ542667    AJD81551.1    GQ165721    ACS45307.1    HM595405    LN885099    ADM32897.1    CUQ99388.1    GQ165718    ACS45304.1    KF768667    AIG51861.1    FJ393455    ACJ12370.1    AB263205    BAG71423.2    GENK01000051    JAV45862.1    KC188668    AGI96750.1    EU979116    ACL81181.1    JN835269    AEY84942.2    KX084459    ARO76414.1    KC299918    AGH58121.1    KC960474    AGY14585.2    AB508298    BAI66609.1    KJ830840    AIZ94620.1    AB508310    BAI66621.1    AJ748328    CAG38114.1    AB597005    BAJ61933.1    FN556591    CBH19582.1    ODYU01000580    SOQ35608.1    AB263206    BAG71424.1    AB186506    BAD89568.1    KJ830839    AIZ94619.1    KY660035    AUY55140.1    LC002701    BAR43449.1    JX173648    AFP54146.1    FN556592    CBH19583.1    KC526967    AGS41443.1    AB101293    BAD69586.1    AB508325    BAI66636.1    AB597007    BAJ61935.1    AB508337    BAI66648.1    JX910532    AGG91649.1    AB508321    BAI66632.1    AB508331    BAI66642.1    AB594450    BAJ22890.1    AB059431    BAD69584.1    AJ874106    CAI43910.1    GQ246496    ACT34880.1    AB263113    BAG71417.1    AB508316    BAI66627.1    JX173649    AFP54147.1    KY283634    AST36293.1    KX084452    ARO76407.1    BK005919    DAA05969.1    AB472092    BAH66309.1    AB508304    BAI66615.1    KY399257    AQQ73488.1    JX910527    AGG91644.1    JN836676    AFC91716.2    AB263207    BAG71425.2    KX655954    AOG12903.1    DQ991148    ABK27842.1    KC538878    AGK43826.1    AB263208    BAG71426.1    KY283714    AST36373.1    JX982539    AGK90014.1    EU818706    ACF32965.1    KX774367    ASA39902.1    GQ165719    ACS45305.1    KF768665    AIG51859.1    GQ165722    ACS45308.1    KJ542665    AJD81549.1    KX084456    ARO76411.1    AB508293    BAI66604.1    GEDO01000068    JAP88558.1    AB508292    BAI66603.1    AB263116    BAG71420.1    AB186505    AJ874107    BAD89567.1    CAI43911.1    GQ246498    ACT34882.1    KY283643    AST36302.1    KY660034    AUY55139.1    KY283585    AST36245.1    KC538876    AGK43824.1    AJ487481    CAD31948.1    KC538877    AGK43825.1    KJ830837    AB596042    AIZ94617.1    BAJ61928.1    AJ748326    CAG38112.1    KC299917    AGH58120.1    KC188667    AGI96749.1    EU979115    ACL81180.1    KC526966    AGS41442.1    GQ844879    ADB89181.1    JX982525    AGK90000.1    RSAL01000268    RVE43211.1    KY283588    AST36248.1    JN169136    AFK30397.1    LC002698    BAR43446.1    JN169142    LC002700    AFK30403.1    BAR43448.1    KF768660    AIG51854.1    JN169137    AFK30398.1    JX910531    AGG91648.1    JN169141    AFK30402.1    KY660038    AUY55143.1   
Pfam
PF02949   7tm_6
Interpro
IPR004117   7tm6_olfct_rcpt       

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
79
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
10.98508
Exp number, first 60 AAs:
5.84105
Total prob of N-in:
0.63090
inside
1  -  79
 
 

Population Genetic Test Statistics

Pi
7.419739
Theta
12.223883
Tajima's D
-0.942532
CLR
0.70224
CSRT
0.145192740362982
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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