SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03653
Pre Gene Modal
BGIBMGA014550
Annotation
desaturase_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 2.532
 

Sequence

CDS
ATGAAGCTAAAACAGAATTCAATATACAACTGGGTGAGGGATCACAGACTCCATCACAAGTTTGCTGACACCGATGCCGACCCTCACAACGTGAAACGAGGCTTCTTCTTCTCCCACATAGGATGGCTGATGGTGAAGAAGAACGAAAGTGTCCTTACGAAGGGAAAGCTGATTGACATGAGTGACATAGAAAGCGATTCTCATTTGATGTTTGAACATAAATACCACAATCAATTAACAATCCTATTCTGTTTTCTAATACCAACATTAATGAACATCTTCTTGATCGGGGAAGATTGGAAATGCGCTATTGCCTGGCAATGCTTCATACGGTATCTCTACGTGCTGCATTGTGAACTGACTGTTAACAGTTTGGCTCATATGTACGGCTATAAACCTTACAACGAAAACATTGAAGCATCAGAGAATATTCTAGTTTCGGTCCTGACGTACGGCGAGGGCTATCACAACTTTCATCATGTCTTCCCATTTGACTTTCGTGCAGCAGAAACTATGGATTTCTTCAGTCTATCCACAAAGATAATCAGAACATTCGAGAAGATTGGTTGGACGTATGACCTCAAGCAAGCCAGTCCAGAAATGATCGAGGCGGCTCGTAACAAGCTAGGGGGTGATGGGTCTAAAGCTAACAATTAA
Protein
MKLKQNSIYNWVRDHRLHHKFADTDADPHNVKRGFFFSHIGWLMVKKNESVLTKGKLIDMSDIESDSHLMFEHKYHNQLTILFCFLIPTLMNIFLIGEDWKCAIAWQCFIRYLYVLHCELTVNSLAHMYGYKPYNENIEASENILVSVLTYGEGYHNFHHVFPFDFRAAETMDFFSLSTKIIRTFEKIGWTYDLKQASPEMIEAARNKLGGDGSKANN

Summary

Cofactor
Fe cation
Similarity
Belongs to the fatty acid desaturase type 1 family.
EMBL
HQ704865    AET36545.1    BABH01043271    BABH01043272    NWSH01000559    PCG75659.1    + More
PCG75660.1    HQ704866    AET36546.1    JX531674    AGO45859.1    RSAL01000244    RVE43603.1    ODYU01002605    SOQ40327.1    KQ460325    KPJ15745.1    KPJ15746.1    KQ459564    KPI99678.1    JX531659    AGO45844.1    NWSH01000211    PCG78358.1    MF687531    ATJ44457.1    JX531665    AGO45850.1    GEYN01000134    JAV01995.1    AGBW02009734    OWR50018.1    GU952764    ADO85597.1    ODYU01012535    SOQ58905.1    GEDC01030129    GEDC01013889    JAS07169.1    JAS23409.1    CH902617    EDV44111.1    NNAY01004348    OXU18023.1    JXJN01007190    CH940652    EDW59212.1    KQ971345    EFA05022.2    AJWK01009460    AJWK01009461    LBMM01016179    KMQ84512.1    CH964272    EDW84429.1    AF482926    AAM28501.1    CH933806    EDW14558.1    GEBQ01004508    JAT35469.1    AF482899    AAM33369.1    GECZ01031245    JAS38524.1    GECZ01001025    JAS68744.1    AF482918    AAM28493.1    GFDL01011942    JAV23103.1    GECU01021427    GECU01014371    GECU01009143    JAS86279.1    JAS93335.1    JAS98563.1    EZ422854    ADD19130.1    CCAG010012086    CM000364    EDX14986.1    GBHO01001405    GBHO01001404    JAG42199.1    JAG42200.1    ACPB03003193    CM000160    EDW99077.1    AE014297    AY047565    AAF57020.1    AAK77297.1    GEYN01000122    JAV02007.1    GDHC01021497    JAP97131.1    GEYN01000124    JAV02005.1    ACPB03002937    CH916369    EDV93158.1    DS232338    EDS40306.1    GECL01000276    JAP05848.1    KQ978543    KYN30213.1    CH479186    EDW39372.1    CM000070    EAL26822.2    GBGD01001849    JAC87040.1    GECU01025859    GECU01023512    JAS81847.1    JAS84194.1    GDIQ01004277    JAN90460.1    GAMC01011209    GAMC01011208    JAB95347.1    GL452916    EFN76589.1    AF482940    AAM28515.1    OUUW01000041    SPP89936.1    KA649803    KA649804    AFP64433.1    KQ460845    KPJ12051.1    KK852680    KDR18593.1    NEVH01019966    PNF22107.1    LNIX01000022    OXA43413.1    GEYN01000127    JAV02002.1    PNF22108.1    GEBQ01002690    JAT37287.1    KK853306    KDR08705.1    AGBW02013325    OWR43604.1    DS235088    EEB11651.1    KDR08706.1    NEVH01023953    PNF17902.1    GDHC01018259    JAQ00370.1    KQ981276    KYN43687.1    EEB11648.1    AAAB01008851    EAA07365.5    JXUM01107306    JXUM01107307    JXUM01107308    JXUM01107309    KQ565130    KXJ71303.1    GEZM01060604    JAV70980.1    KF576672    AHH30813.1    KK852437    KDR23917.1    NWSH01004663    PCG64797.1   
Pfam
PF00487   FA_desaturase
Interpro
IPR015876   Acyl-CoA_DS        + More
IPR005804   FA_desaturase_dom       
IPR001522   FADS-1_CS       
IPR009160   Acyl-CoA_deSatase_haem/ster-bd       
PDB
4YMK     E-value=3.59961e-54,     Score=532

Ontologies

Topology

Length:
218
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
24.64718
Exp number, first 60 AAs:
0.04394
Total prob of N-in:
0.52398
inside
1  -  78
TMhelix
79  -  96
outside
97  -  218
 
 

Population Genetic Test Statistics

Pi
11.054103
Theta
6.505451
Tajima's D
-1.821199
CLR
0.26609
CSRT
0.023598820058997
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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