Gene

KWMTBOMO03652

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr6(+):14718969-14720095      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.806 Nuclear   Reliability : 1.202

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGGTCGGTGCCCTACTCCACGCTTTTCATCCTGTATATCAATGATATGCTGTCTATTGATGGCATGTATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAAATTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATAGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACGGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTCTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCTCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCAGTCTCACGGATAGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCTCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATAGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGATTCCAGAGATATTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCATGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCGGAGAGGTGGAGAGTATTAAGCGGTAA

Protein

MTINAGVPQGSVPYSTLFILYINDMLSIDGMYCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELKLVQFNPLKTQVCAFTAKKDPFVIAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNGAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPSLTDSLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHSTARHRSRVHPYYLEPLRSSTVRFQRYFLPRTIRLWNELPSMVFPERYDMSFFKRGGEVESIKR

Uniprot

Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A3S2NHP4   A0A3S2NMS5   + More
A0A3S2NTH0   A0A3S2NMX8   A0A2H1VFZ3   A0A3S2P9Q3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   J9GT67   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4Q4   A0A147BJQ0   A0A1E1XN74   A0A131Y4I8   A0A1E1XNW6   A0A147BJ69   A0A131XRE4   A0A147BU27   A0A0P4VVV8   A0A131XQR9   A0A1E1XNL1   A0A147BLD9   A0A1E1X2T1   A0A131Y3E3   A0A147BNQ9   A0A1E1X2P5   A0A131XT39   A0A090XE26   A0A147BNC9   A0A2H9T4Y5   A0A2B4RTL1   A0A2H9T3F5   A0A0P4VTV9   A0A2G8KET5   A0A1G4M3N1   A0A0P4VPK5   A0A147BQ97   A0A147BPB7   A0A1G4M5I2   A0A1E1XPS6   A0A147BJZ1   A0A1E1XGC7   A0A2H9T4Q5   A0A1E1XVU2   A0A2H9T2R7   A0A1E1X2R3   A0A147BB29   A0A2S6A1F0   K7EX39   K7EZY0   A0A0K8RPQ6   K7EZT4   K7EYD9   K1QCH1   A0A147BJE1   A0A2H9T2Z5   K7EYK3   A0A2H9T2U6   A0A2I0UC10   A0A147BRL4   A0A1E1XM20   A0A210QEX7   A0A2G8JWN9   A0A1E1X2P4   A0A131XTA8   A0A2H9T4F1   A0A1E1XN53   A0A147BMF5   A0A1E1WW75   A0A147BL51   U5EU32  

Pubmed

30148503    23251564    24065732    28345194    28503490    29652888    + More
29209593    25970599    29150518    29023486    17381049    22992520    28812685   

EMBL

AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    RSAL01000487    RVE41561.1    + More
RSAL01000422    RVE41792.1    RSAL01003136    RVE40332.1    RSAL01000002    RVE54942.1    RSAL01000090    RVE48098.1    RVE55041.1    RVE55094.1    ODYU01002162    SOQ39302.1    RSAL01000164    RVE45343.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    ODYU01007423    SOQ50184.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002324    JAP73472.1    GEGO01004433    JAR90971.1    GFAA01002657    JAU00778.1    GEFM01002394    JAP73402.1    GFAA01002479    JAU00956.1    GEGO01004630    JAR90774.1    GEFM01005882    JAP69914.1    GEGO01001118    JAR94286.1    GDRN01111277    JAI56804.1    GEFM01006417    JAP69379.1    GFAA01002514    JAU00921.1    GEGO01003794    JAR91610.1    GFAC01005646    JAT93542.1    GEFM01002419    JAP73377.1    GEGO01003312    JAR92092.1    GFAC01005665    JAT93523.1    GEFM01006421    JAP69375.1    GBIH01002577    JAC92133.1    GEGO01003111    JAR92293.1    NSIT01000218    PJE78268.1    LSMT01000297    PFX20951.1    NSIT01000412    PJE77717.1    GDRN01111334    JAI56796.1    MRZV01000639    PIK46517.1    FLMD02000154    SCV66010.1    GDRN01111278    JAI56803.1    GEGO01002473    JAR92931.1    GEGO01002794    JAR92610.1    FLMD02000280    SCV66640.1    GFAA01002385    JAU01050.1    GEGO01004295    JAR91109.1    GFAC01000861    JAT98327.1    NSIT01000239    PJE78188.1    GFAA01000066    JAU03369.1    NSIT01000538    PJE77518.1    GFAC01005670    JAT93518.1    GEGO01007438    JAR87966.1    PSZC01000087    PPJ25136.1    AGCU01040360    AGCU01117056    GADI01001229    JAA72579.1    AGCU01073976    AGCU01094663    JH815916    EKC31648.1    GEGO01004497    JAR90907.1    NSIT01000477    PJE77602.1    AGCU01160977    NSIT01000539    PJE77517.1    KZ505886    PKU43598.1    GEGO01002025    JAR93379.1    GFAA01003161    JAU00274.1    NEDP02004020    OWF47171.1    MRZV01001153    PIK40187.1    GFAC01005653    JAT93535.1    GEFM01005909    JAP69887.1    NSIT01000271    PJE78081.1    GFAA01002726    JAU00709.1    GEGO01003427    JAR91977.1    GFAC01007905    JAT91283.1    GEGO01003895    JAR91509.1    GANO01002501    JAB57370.1   

Proteomes

UP000283053    UP000225706    UP000230750    UP000239874    UP000007267    UP000005408    + More
UP000242188   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF01873   eIF-5_eIF-2B
PF08159   NUC153
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR028082   Peripla_BP_I       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF50978   SSF50978       
SSF53822   SSF53822       

Gene 3D

3.60.10.10     3.30.70.330    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A3S2NHP4   A0A3S2NMS5   + More
A0A3S2NTH0   A0A3S2NMX8   A0A2H1VFZ3   A0A3S2P9Q3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   J9GT67   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4Q4   A0A147BJQ0   A0A1E1XN74   A0A131Y4I8   A0A1E1XNW6   A0A147BJ69   A0A131XRE4   A0A147BU27   A0A0P4VVV8   A0A131XQR9   A0A1E1XNL1   A0A147BLD9   A0A1E1X2T1   A0A131Y3E3   A0A147BNQ9   A0A1E1X2P5   A0A131XT39   A0A090XE26   A0A147BNC9   A0A2H9T4Y5   A0A2B4RTL1   A0A2H9T3F5   A0A0P4VTV9   A0A2G8KET5   A0A1G4M3N1   A0A0P4VPK5   A0A147BQ97   A0A147BPB7   A0A1G4M5I2   A0A1E1XPS6   A0A147BJZ1   A0A1E1XGC7   A0A2H9T4Q5   A0A1E1XVU2   A0A2H9T2R7   A0A1E1X2R3   A0A147BB29   A0A2S6A1F0   K7EX39   K7EZY0   A0A0K8RPQ6   K7EZT4   K7EYD9   K1QCH1   A0A147BJE1   A0A2H9T2Z5   K7EYK3   A0A2H9T2U6   A0A2I0UC10   A0A147BRL4   A0A1E1XM20   A0A210QEX7   A0A2G8JWN9   A0A1E1X2P4   A0A131XTA8   A0A2H9T4F1   A0A1E1XN53   A0A147BMF5   A0A1E1WW75   A0A147BL51   U5EU32  

KEGG

101744003    no KO assigned | (RefSeq) uncharacterized LOC101744003

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0005634   GO:0005739  

PANTHER

PTHR13288   PTHR17602   PTHR14927  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.683099999999998

Exp number, first 60 AAs:

0.68263

Total prob of N-in:

0.04171

outside

1  -  313

 

 

Pi

7.674071

Theta

5.92119

Tajima's D

0.724946

CLR

1.19385

CSRT

0.5985200739963

Interpretation

Uncertain