Gene

KWMTBOMO03645

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]

Location

Bomo_Chr6(+):14325895-14327745      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.409

CDS

ATGGACATTTTGGCTTCTCTTCATTCAAAAAAAAGTTTCTCATCATTTTGGAAGAGTACTAAAAAATTTGATAAATCACCAAGTCTTCCAGTTAGCGTGGAGGGTGAGAGTGACTACATTGGAATAGCAAATATATTTAAAGATCATTTTAAAGTAATTTCTCCATTAAAGACAGCGTCGTTGAGGAATGGTGCTGAGTTCTGTCAATCAGGTTTGCCAGTTCATTTTACATGTAAAGAAATAAAAACTGTTATAAAGGGTATGAAAAGAGGCAAGTCTCCTGGTAATGATGGACTCAGCATCGAGCATCTCCAGAATTCTGGTGTTCACCTGCCGAGAGTTTTGACTATGTTGTTCAATTTGTTTGTGGGGCATTCTCACTTACCAAGGGAGATGTTGGACACAATAGTTGTACCTATTGTAAAAAACAGGACAGGAGACATAGCGGACAAGGGAAATTATAGACCAATTTCACTGGCAACCGTCATAGCCAAGGTGTTTGACAGCGTGCTTGACTCACATCTCAGTGGATACACTAAACTGCATGATACACAGTTTGGATTTTGTGCTGGGCTATCTACTGAGAGTGCCATTTTTGCACTGAAGCATGCTGTCAAATACTACACTGATAGGAAAACACCAGTGTATGCCTGTTTCCTGGACCTATCAAAAGCCTTTGACCTTGTTTCCTATAATATCTTGTGGGAAAAGCTACTGGGAGAGGGTGTACTTCCTTCATTAGTAAATATATTATCTTTGTGGTATGAGAAGCAGAGGAACTTTGTACGGTGGTCCAATGTACTGTCAGACCCTTACAAACTAGAATGTGGTGTAAGGCAGGGTGGTTTGACCTCCCCGAGGCTCTTTAATATATATGTAAATAAGCTACTTGAGGAGCTCAGTAGCACACATGTTGGTTGTCATATAGATAATTTGTGTCTTAATAACATTAGCTATGCGGATGACATGGTGCTGCTGAGCCCATCAATATGTGGGTTAAGAAAGTTGCTTTCCATATGTGAATCCTATGCTGAGGATCATGGCTTAAAGTATAACCCTAGTAAAAGTGAGCTGTTGGTGTTCAGAGGTGTAAACAAAAGTCCACCTCATGTCCCGCCTCTAATGCTCGGTGGCTTACCTGTACAAAGAGTAGCACAGTTCAAATATCTAGGGCATATTGTAACTGAGGAATTAAAAGATGATATGGACATGGAAAGGGAACGCAGGGCATTGGCTGTCAGAGGGAATGTAGTGGCACAAAGATTTGCAGGTTGTTCAGTGCCGGTCAAAATTACCCTCTTCAAGGCTTACTGCCAAACCTTTTACACAAGCGGTCTTTGGGCTACTCATACCCAAAAAACGGATAATGCCCTGCGCATACAATATAATAATGCCTTCAGGGCGTTGTTGAGGCTTCCACCTTATTGTAGTGCATCAGGCATGTTCGCCGATGCGCACACGGATGACTACTTCGCGATAATGCGCAAAAAGGTGGCATCCATTATGCGTAGAGTAGGAGGAAGCACCAACAACGTCTTGAGGGTACTAGCTGAAAGACTGGATGGCCCGACCCTGGGTAGGTTCATCAAGTTGCATGTTCTACATGCTGCTTGA

Protein

MDILASLHSKKSFSSFWKSTKKFDKSPSLPVSVEGESDYIGIANIFKDHFKVISPLKTASLRNGAEFCQSGLPVHFTCKEIKTVIKGMKRGKSPGNDGLSIEHLQNSGVHLPRVLTMLFNLFVGHSHLPREMLDTIVVPIVKNRTGDIADKGNYRPISLATVIAKVFDSVLDSHLSGYTKLHDTQFGFCAGLSTESAIFALKHAVKYYTDRKTPVYACFLDLSKAFDLVSYNILWEKLLGEGVLPSLVNILSLWYEKQRNFVRWSNVLSDPYKLECGVRQGGLTSPRLFNIYVNKLLEELSSTHVGCHIDNLCLNNISYADDMVLLSPSICGLRKLLSICESYAEDHGLKYNPSKSELLVFRGVNKSPPHVPPLMLGGLPVQRVAQFKYLGHIVTEELKDDMDMERERRALAVRGNVVAQRFAGCSVPVKITLFKAYCQTFYTSGLWATHTQKTDNALRIQYNNAFRALLRLPPYCSASGMFADAHTDDYFAIMRKKVASIMRRVGGSTNNVLRVLAERLDGPTLGRFIKLHVLHAA

Uniprot

A0A2W1BGX6   A0A2W1CP14   A0A3S2PB24   A0A2A4KA90   A0A2W1BE63   A0A2W1BJX4   + More
A0A2W1BUS0   A0A3S2NHF1   S4NNA8   A0A2W1BC01   A0A3B3HNF2   A0A3B3I5I8   A0A3B3IJ19   A0A3P9KQQ7   A0A3B3I0P1   A0A3P8PZH5   A0A1A8UAJ7   A0A3P8RHR9   A0A146RF43   A0A146R782   A0A146RB37   A0A2H1VMX5   A0A146ZPI4   A0A146P365   A0A146RD82   A0A0P4VXS2   A0A3C1S3F5   A0A354GI36   A0A0A9YSH8   D5LB38   A0A1Y1K7T4   A0A1T2KXF3   A0A146M389   W4YPF0   W4Y5D2   A0A2S2QAF2   A0A1Y1M3I5   A0A1Y1LZ08   A0A3B1JRA2   A0A151QVZ1   A0A0A9YHJ5   A0A1B6KRX2   A0A0K8SCZ7   A0A0A9Y6A7   A0A224XIQ4   A0A2D4KEY8   A0A0J7KZE8   A0A146KVE5   A0A224X5Y1   A0A1Y1K5U2   A0A1Y1K319  

Pubmed

28756777    23622113    17554307    30148503    25401762    20470440    + More
28004739    26823975    25329095    22057054   

EMBL

KZ150185    PZC72467.1    NHMN01024349    PZC87407.1    RSAL01000132    RVE46368.1    + More
NWSH01000012    PCG80896.1    KZ150122    PZC73158.1    KZ150039    PZC74591.1    KZ149940    PZC76937.1    RSAL01004459    RVE40147.1    GAIX01014011    JAA78549.1    KZ150625    PZC70440.1    HAEJ01003895    SBS44352.1    GCES01119762    JAQ66560.1    GCES01122004    JAQ64318.1    GCES01120657    JAQ65665.1    ODYU01003417    SOQ42157.1    GCES01018090    JAR68233.1    GCES01147931    JAQ38391.1    GCES01120011    JAQ66311.1    GDRN01099830    JAI58698.1    DMQF01000507    HAO15811.1    DNUT01000366    HBI40674.1    GBHO01007597    JAG36007.1    GU815089    ADF18552.1    GEZM01094272    GEZM01094271    JAV55745.1    MPRK01000277    OOZ37539.1    GDHC01004388    JAQ14241.1    AAGJ04127121    AAGJ04127122    AAGJ04127123    AAGJ04058037    GGMS01004979    MBY74182.1    GEZM01043747    JAV78865.1    GEZM01043748    JAV78864.1    KQ484600    KYP34423.1    GBHO01011985    JAG31619.1    GEBQ01025973    JAT14004.1    GBRD01015171    JAG50655.1    GBHO01016428    JAG27176.1    GFTR01008507    JAW07919.1    IACL01060951    LAB07281.1    LBMM01001656    KMQ95932.1    GDHC01019542    JAP99086.1    GFTR01008539    JAW07887.1    GEZM01094174    JAV55841.1    GEZM01094173    JAV55843.1   

Proteomes

UP000283053    UP000218220    UP000001038    UP000265180    UP000265100    UP000190198    + More
UP000007110    UP000018467    UP000075243    UP000036403   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF12832   MFS_1_like
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR000477   RT_dom       
IPR024989   MFS_assoc_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF103473   SSF103473       

Gene 3D

3.60.10.10    

CDD

cd06174  MFS

ProteinModelPortal

A0A2W1BGX6   A0A2W1CP14   A0A3S2PB24   A0A2A4KA90   A0A2W1BE63   A0A2W1BJX4   + More
A0A2W1BUS0   A0A3S2NHF1   S4NNA8   A0A2W1BC01   A0A3B3HNF2   A0A3B3I5I8   A0A3B3IJ19   A0A3P9KQQ7   A0A3B3I0P1   A0A3P8PZH5   A0A1A8UAJ7   A0A3P8RHR9   A0A146RF43   A0A146R782   A0A146RB37   A0A2H1VMX5   A0A146ZPI4   A0A146P365   A0A146RD82   A0A0P4VXS2   A0A3C1S3F5   A0A354GI36   A0A0A9YSH8   D5LB38   A0A1Y1K7T4   A0A1T2KXF3   A0A146M389   W4YPF0   W4Y5D2   A0A2S2QAF2   A0A1Y1M3I5   A0A1Y1LZ08   A0A3B1JRA2   A0A151QVZ1   A0A0A9YHJ5   A0A1B6KRX2   A0A0K8SCZ7   A0A0A9Y6A7   A0A224XIQ4   A0A2D4KEY8   A0A0J7KZE8   A0A146KVE5   A0A224X5Y1   A0A1Y1K5U2   A0A1Y1K319  

PDB

5IRG     E-value=7.99029e-05,     Score=111

KEGG

101737143    no KO assigned | (RefSeq) uncharacterized LOC101737143

GO

GO:0016021   GO:0003964   GO:0004519   GO:0003887  

Length:

537

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02735

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00119

outside

1  -  537

 

 

Pi

4.031435

Theta

14.2568

Tajima's D

-1.828663

CLR

14.516054

CSRT

0.0243987800609969

Interpretation

Uncertain