Silkworm Genome Informatics Database

Gene

KWMTBOMO03642

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr6(-):14267554-14274124 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.695

CDS

ATGGGTGATGGAGGGTACCTCCCGCTCTGCGGGGGGAGAATCCCTCCGTGCGGTCGAGCGATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGCAAACTTTGTCAAGACGAAGGGGGCGACGGCACGGGTCGCGTAAGGGACCGAGTTCCCACCGTGTTACTGGAGCGCTGTGACAGCCTGATTTCCCTGCACTCGGCGCGAAGCTCCGCGAGGGGCGACGCGTCCAGTGGGAGGGAAACTCCGGCTCTGTTCGCCGATAATGTTCGGCAACGGACTCGGCGGAAGCGGAAGTCGGCTCGACGGCCGGCGTCCTCCGCTCCGTCTGACTCCTCGGAGGGTGAGCCTGCCAGCGCCAAATATATGGCGTTGGCGGAAGGGCCGGCGACTGCTGCGGCGTCGCTCGCCACTAATTGTGACGTTTCTTCCCGCGGACTGGATGCTGCCTCCTTGGCGCAGTCCAGGGCCGCCTGCCGAAAGGCACCGAATGGGACAGAGGTGGGAGAGGTCGAGCGACTGGAGCGCTCCCTGACGGAGGTGGGTCCCTATGACCCTCTCCGTAGATTAAACATTATTAAAAAACTTGTGTCCGCGGTGGCGACGAAGTCGAGCGCGGGCTTAAGGGGTGACTGCCTACGGGCCCTCAAATCTTCAGCCACCTCGATGGAGGAGATATTGGTGGAGGTGGTGGAGCGCACGACGGACAAGGAGAACGCGGACCTGCGGCGGGAGCTGGACCTTATGCACGCCCGTTTTGCGCAGGTGAGCGAAGAGAACGGCCACCTGCGAGCTGAAAACGGTCAAATCAAGGTTGACATGGCAGAGCTGCGCACGCTGGTCAACGACCTGGTAGAGCAGCAGCGCAGCTCGGCCCCCGTTCCCCCTCCGCCCGAAGTGGAAGATGCGACACCAGCGGCACGTTCGGCCGCTTCGGCTGCTGCTCCGGCCAAACCCGGATCATCGGCAAAGGATACGGGGGCACCAAAACCCGCCCCCTCAAGGGCACCTATCACCGGCCAGCCCAAGACCCAGAAGGCCGCTCCTGCCCCGTCCCAGCCTGCGAAGGTGGGGCCCGGCAGGAGTCGGAATAAAAAGAAGGGGGGCGTCAACGCCGCCAAACCGGCACCGACTCCCCAGCCCCGCCCACTGCCCCCGGCCCCAGCAAACATGGATGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCTAAGAAAGTGGCGGCGCCTCCTGCGCCGCGCCCCAAGCCCGCCCCTGCGGCCACCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGAAATGGACGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTAGTGGAGCTGCTGCCGGCCGGCAAAGAAAAGGGCATCACCTACCATGAGGTGATGACCCAGGCGCGCGGCGGCGTGGATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTAAAAATGGCGGAGGTGAAGATTACGGGCCTCGACGAGTGCGCCACGAAGGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAGCTCCGGGCGACGTACTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCCATCGCAACGGCGAACCTCCTGGCCACCCCTCCACAGGGTCGGCCTTCGGACAGCCCAGGATGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAACTGCAGGAGAGCAGGCCGTGGCGTTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGACCTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCTAAAAGGAAGGCCGACCACCGGGCCGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACCAAAACGAGGAGGGGCGGAAAGAAAAATAAAAAGAAGAAGGAGAGGCCGGCTGCAACAAGGGCAGCCGGCGAGTCAGTTCCCGCCGCGGCTATTGTCGAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGGCACAGGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCCGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATCGTACTAAGACAGTCCGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCTGAATTCGAACGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCGCCCAGTCATCGTCGCGGGGGACCTCAATGCCAAGTGTACGGCTTGGGGCTCCCCCCGCACGGATTCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGCAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTTGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGCGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGGATGAATAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGCGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGAGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCCGTCGTCGCGACGCTGCGTTCGCGGAGACGGCGGCCCAGCTGCACGCTGACTGTCGTCAGAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGATGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATTGTTGCGGCACTCTTCCCGCCGGCAGCAGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCACCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACGATCGACGCGATTTTGCGCGTGCGTGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCTGTCTTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCGTACGGGGTCCCCTCCCCGGGCTGAGCGTCATTTGTTACGCTGACGACACTCTGGTCGTGGCTCCGGGGAGGGATTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACAAGGATCCGACGGCTGGGACTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGTTGTTTCACGGGCCGGGACGAGCGCCGCCTCTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTTGAACTGGATGGTCGGTGGAACTTCCGCGCTCACTTTGCGAAGTTGGGCCCTCGACTGATGGCGACGGCCGGCTCTTTGAGTCGGCTGCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGGGCTCCCGTATGGTGCCACGCCCTGACCCGCAAGAACGTCGCGGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACTGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGAGCTTCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAAATGTTGACCGGCCATGGTTGTTTTGGCCGGTACCTTTTCAAAATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MGDGGYLPLCGGRIPPCGRAIGRTLPHRFWGGKLCQDEGGDGTGRVRDRVPTVLLERCDSLISLHSARSSARGDASSGRETPALFADNVRQRTRRKRKSARRPASSAPSDSSEGEPASAKYMALAEGPATAAASLATNCDVSSRGLDAASLAQSRAACRKAPNGTEVGEVERLERSLTEVGPYDPLRRLNIIKKLVSAVATKSSAGLRGDCLRALKSSATSMEEILVEVVERTTDKENADLRRELDLMHARFAQVSEENGHLRAENGQIKVDMAELRTLVNDLVEQQRSSAPVPPPPEVEDATPAARSAASAAAPAKPGSSAKDTGAPKPAPSRAPITGQPKTQKAAPAPSQPAKVGPGRSRNKKKGGVNAAKPAPTPQPRPLPPAPANMDEAWTTVVRRGPKKVAAPPAPRPKPAPAATAPRQEGRAEPRGRNGRRRPRAPRSAAVVVELLPAGKEKGITYHEVMTQARGGVDVDALGVEGGIKILPDPEVVRIARPVKMAEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRATYSGTRTAWARCPIATANLLATPPQGRPSDSPGWLRVGWVVAHVQLQESRPWRCLRCFGTGHGLAKCPSTVDRSDLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGARRVNPPPPLPKRGGAERKIKRRRRGRLQQGQPASQFPPRLLSSRRAGQTRERWTAQDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIVLRQSAALPPLDMVARGPGYVAARIDGTVVIGAYFSPNRSLAEFERFLGGLEALLHRLGSRPVIVAGDLNAKCTAWGSPRTDSRGEALSEWAIATGLCLLNRGTVATCVRWNGQSHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRRRDAAFAETAAQLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVAALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVVRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPLGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFAKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSELRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A3S2LNH8 A0A0J7KFH2 A0A0J7NFZ0 J9KJG8 + More
X1WZ64 J9KM84 J9JWJ3 J9KWM9 X1WJY4 J9LA43 A0A139W940 J9KNS1

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 RSAL01003504 RVE40273.1 + More
LBMM01008278 KMQ89009.1 LBMM01005474 KMQ91485.1 ABLF02041886 ABLF02011183 ABLF02041884 ABLF02018942 ABLF02041885 ABLF02013358 ABLF02013361 ABLF02054869 ABLF02011927 ABLF02011238 ABLF02018098 KQ972691 KXZ75806.1 ABLF02018808

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A3S2LNH8 A0A0J7KFH2 A0A0J7NFZ0 J9KJG8 + More
X1WZ64 J9KM84 J9JWJ3 J9KWM9 X1WJY4 J9LA43 A0A139W940 J9KNS1

PDB

1WDU E-value=1.00601e-09, Score=158

KEGG

101739497 no KO assigned | (RefSeq) uncharacterized LOC101739497

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0007165 GO:0016020 GO:0005515 GO:0051103 GO:0005524 GO:0042555 GO:0048384

Length:

1772

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19031

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00001

outside

1 - 1772

Pi

10.209828

Theta

12.623532

Tajima's D

-0.899643

CLR

6.14279

CSRT

0.151292435378231

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree