Gene

KWMTBOMO03638

Pre Gene Modal

BGIBMGA006338

Annotation

PREDICTED:_rootletin_[Bombyx_mori]

Location

Bomo_Chr6(+):14061155-14074951      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.701

CDS

ATGGTTTTTAGGGGTTTCATTTATTGTCGACTACAAAACGAGGCGGAGGAGCGCGAGCGGTGCGCCAGCGAGGCGGCGGCGGCGCGGCGGCACGGCGCCGAGCTGGAGGCCGTGCTGCAGGCCGCGCGGGCCGACCTCGCCGCCGCGCGCCAGCGGGCCGCCGAGCTGGACGAGGCCTGTCGCGCCAGGGACCAGGAATTAGTGCTGCGTCTAGAAGACTGCCGCTCGAAGGAGCGTAGACTTGAAGAACTGAAGCACAACTTGGAAGTTTGTCTCGCCGATGCGACGCAGCAAATACAGGAATTGAAGGCGCGGCTCGGCGGGTGCGAGGGCCGGTGCCGCGCGCTGGAGGCGTCCCTGAGCCAGTGCGAGGGCGGCAGGCGCGAGGCCGAGTCCAAGCTGTCGTCGGTGGTGCACAGCTTGCGGCGCGTGTGCGGCGTGCAGCCCGACGGCTCGCTGCAGCCCGCCGCGCGCCGCCGCCTCGCCAGCCCCGCGCGCCGCTACAGCCCGCACCGAGGTCGTGACCATTCCGAGGATCGTAACGAGATAATCGACGTCGACCCGGAGTTGATCAAGAAGGGCGTCAGGAACCTGATGCACGATGTCTGTCAAATCGAGAGGGAGAAGGACGACTACAAGTCCCAAGTGACCGTGCTCAAGAAGCAGTTGAAGGAGGCGACGGAGCAGCAGGGCAAGGGCGAGGGCAAGCTGCAGACGGCGGCCGCCAGCCTGCGCGCGCTGCAGGACGAGCGGGCGCGCCTGCACGCCGCCTGCGGGAACAAGGACGCGCAGCTGCTCGCGCTGAACGAATCGATACAGTCGAAGACGGTCGAGATAAGCAGCTTGAGGGACAAGATAACCAGTTTAGAAGCAGCTCTAAGCTCCGTCACCGAAGAGAAAGTACAGGCGGAGAATAAAGCGGAAAGTCTGCGCGCGCAGCTGGCCGAGCGCGCACACGAAGCCGCCCAGCTGCGGGAGGCGCTGACGGCTGCCGAAGGTCGCGCGGCCCGCCTGGACGTGCGGCGCGCGCAGCTCGAGGGAGACGTGCAGCGCGCCGCCGTCGCCGCCAGGGACAGGGACCAGGCCCTCAAGAAACTGCAAGAGCGCTGCGAGGGCTACACGCGCACGATAGCGCAGCTGGAGGACCGCTGCACGTCGCTGAAGGGCACGGTGGAGCAGCTGTCGGCAGCGCTGCAGCGGGCCGCCACCGCTGAGGGCGAGCTGCGCGCCGAGCTGGCCAAGCTGCAGCGGCAGCTCGGCGAGGCGCGCGCGCAGGGACAGAGCGCCGCCGAGAAACTCAGGCACATACAGAAGAATATCACGAGTTGCGAGAACGAGCGGCGCGTGCTCACTGAGAAACTGGAGAGTGCCAAATCGGCTCTCGGCGAGTTAAAGCGGCAGAACTCGACGCTGGAAGACCAGGTCCACAGACTCACCAATCAGCTGGCAAACGTAGAAGTGCAACGATCTGGCCTAGAATCCCAACTGCGCATGACGACCTGGGACGGCAAGGAGTCCAACGACGGCGAGCTGGAGCGCGAGCTTCACGAGCTGCAGCGAGAGCGCTCCGAGCTCAAAGCGAAGAACGACGCCCTCCAGGACACGCTGAGGAAGCTGGAGGCGGACCGGAGGATGACCAGGCCCTCCGTGTTGAGGACCAAGAGCCACGACCGGACCGAGAAGAGCGTGTACTACTCGGATTTGGATTCAGGGCCAGATTCGACTAAGGACTCGTCGTCGCACTGCTACAAGGACAAGGAGGTGCCCTGCAGGGACAAGGGACTCTCCACCGAGCTGAGTCTGCTCGAGCTGGAGAACAGAGAGCTGAGGATGAAGATACGACGCCTCGAGAAGGAACTTGCTGATAAGGAGTCGGAGCTGGCGGTGGCCCGCAGCCGCTACCTGGGCGAGCTATCCGCTTCAGGCCCGGAGTGCCGCGACGACGCGGAGCAGTACCGCCGCGCCGCGCTGCAGGCTGAGCGGCTGCTGGAGGCGCGCGAGGCCAGCCACCGCCAGCAGATGCTGCGTCTCGAGAACCAGGCGGCGCAGCTCCGGGCGCAGCTGTCGGCGGAGATCCGGCGGCGCCAGGCGTACGTGTCGCGCAGCGGGCGCGCCGCCCGGGACGTGCAGCGCCTGCGGGCCGCGCTCGGGGACTCGCTGAGGACGGTGTCGCAGGATCCGGCCCTGGACTCTTACACATTGGAACATGAAGCCAGAAAGTTGGACAGCACCCTGGCTCACAGTCTACCGCCGCTCACCGACAGCTACGACTCATCAAAATAA

Protein

MVFRGFIYCRLQNEAEERERCASEAAAARRHGAELEAVLQAARADLAAARQRAAELDEACRARDQELVLRLEDCRSKERRLEELKHNLEVCLADATQQIQELKARLGGCEGRCRALEASLSQCEGGRREAESKLSSVVHSLRRVCGVQPDGSLQPAARRRLASPARRYSPHRGRDHSEDRNEIIDVDPELIKKGVRNLMHDVCQIEREKDDYKSQVTVLKKQLKEATEQQGKGEGKLQTAAASLRALQDERARLHAACGNKDAQLLALNESIQSKTVEISSLRDKITSLEAALSSVTEEKVQAENKAESLRAQLAERAHEAAQLREALTAAEGRAARLDVRRAQLEGDVQRAAVAARDRDQALKKLQERCEGYTRTIAQLEDRCTSLKGTVEQLSAALQRAATAEGELRAELAKLQRQLGEARAQGQSAAEKLRHIQKNITSCENERRVLTEKLESAKSALGELKRQNSTLEDQVHRLTNQLANVEVQRSGLESQLRMTTWDGKESNDGELERELHELQRERSELKAKNDALQDTLRKLEADRRMTRPSVLRTKSHDRTEKSVYYSDLDSGPDSTKDSSSHCYKDKEVPCRDKGLSTELSLLELENRELRMKIRRLEKELADKESELAVARSRYLGELSASGPECRDDAEQYRRAALQAERLLEAREASHRQQMLRLENQAAQLRAQLSAEIRRRQAYVSRSGRAARDVQRLRAALGDSLRTVSQDPALDSYTLEHEARKLDSTLAHSLPPLTDSYDSSK

Uniprot

H9J9Z3   A0A2W1C1S3   A0A2H1WN22   A0A194QHD9   A0A2A4K9L5   A0A2A4KAK9   + More
A0A212FGJ2   U4UUM7   A0A2J7RAI3   A0A154PFW9   A0A1B6DR95   A0A1Y1KLC3   E2B1W1   A0A088AIK1   A0A067RCM1   A0A1Y1KP05   A0A2A3ELA4   E2BI77   E9J840   A0A151WFQ2   A0A151IGA7   A0A158NCC9   F4WWW8   E0VQE7   A0A0L7RDF9   A0A195BX65   A0A195FA33   B4HGI0   A0A3L8DJD9   A0A026VX42   A0A151JRC7   W8BFI9   A0A0M9A7A4   A0A310SIL3   K7J1S2   A0A1B0DFF2   A0A0R3NM45   A0A034W3Q4   Q8MSN3   W8B8C7   A0A0P8YHI3   B4PL19   A0A1J1HJW0   B3P794   A0A1W4V4Y4   A0A1S4FNQ4   A0A3B0JKG4   Q298K1   A0A3B0KAL6   B3M0M2   Q9VCD1   A0A0K8WED7   A0A0K8UUX9   Q16UG5   A0A0M5JCU3   B4JIG6   B4MBY9   B0W3H0   A0A0A9Y2R0   A0A146MI46   D6WAQ4   B4K7D8   A0A084WV24   A0A023F204   A0A182GEU3   A0A1S4HI61   A0A0L0CLJ9   B4NBN2   B4G420   A0A182NKX5   A0A1I8Q0E1   A0A182KFC9   A0A1I8MNC7   A0A182R837   A0A182J463   A0A1B0BJN2   A0A0J7L423   A0A182MK66   A0A182VSA1   A0A182Q9W2   A0A182F8K7   A0A1A9X182   W5JSS1   A0A1A9ZLB0   A0A1A9VR09   A0A182HJV1   A0A182XK40   A0A182YM45   Q7QDG9   A0A1B0G867   A0A182KX30   A0A182PN00   A0A0A9Y8A8   A0A232FCT5   A0A182U1F7   A0A2S2NHV3  

Pubmed

19121390    28756777    26354079    22118469    23537049    28004739    + More
20798317    24845553    21282665    21347285    21719571    20566863    17994087    30249741    24508170    24495485    20075255    15632085    25348373    17550304    17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    26823975    18362917    19820115    24438588    25474469    26483478    26108605    25315136    20920257    23761445    25244985    12364791    20966253    28648823   

EMBL

BABH01026097    BABH01026098    BABH01026099    BABH01026100    KZ149893    PZC78916.1    + More
ODYU01009807    SOQ54470.1    KQ459011    KPJ04350.1    NWSH01000017    PCG80769.1    PCG80770.1    AGBW02008658    OWR52848.1    KB632375    ERL93850.1    NEVH01006569    PNF37841.1    KQ434896    KZC10776.1    GEDC01009119    JAS28179.1    GEZM01080365    JAV62192.1    GL444981    EFN60317.1    KK852593    KDR20670.1    GEZM01080366    JAV62191.1    KZ288222    PBC32052.1    GL448457    EFN84608.1    GL768788    EFZ11012.1    KQ983211    KYQ46667.1    KQ977728    KYN00257.1    ADTU01011816    GL888417    EGI61211.1    DS235418    EEB15603.1    KQ414614    KOC68883.1    KQ976396    KYM92885.1    KQ981727    KYN37072.1    CH480815    EDW43433.1    QOIP01000008    RLU19968.1    KK107648    EZA48327.1    KQ978602    KYN29933.1    GAMC01009088    JAB97467.1    KQ435720    KOX78690.1    KQ760869    OAD58796.1    AJVK01058717    CM000070    KRT00357.1    GAKP01010539    JAC48413.1    AY118691    AAM50551.1    GAMC01009090    JAB97465.1    CH902617    KPU80731.1    CM000160    EDW99004.2    CVRI01000006    CRK87834.1    CH954182    EDV53914.1    OUUW01000007    SPP82715.1    EAL27948.1    SPP82716.1    EDV44269.1    AE014297    AAF56238.3    AAN13982.3    AHN57496.1    GDHF01003104    JAI49210.1    GDHF01021837    JAI30477.1    CH477622    EAT38172.1    CP012526    ALC47431.1    CH916369    EDV93047.1    CH940656    EDW58610.1    DS231831    EDS31313.1    GBHO01016267    JAG27337.1    GDHC01000213    JAQ18416.1    KQ971312    EEZ97966.2    CH933806    EDW14262.1    KL646512    KFB54068.1    GBBI01003763    JAC14949.1    JXUM01058733    JXUM01058734    KQ562016    KXJ76893.1    ATLV01011398    JRES01000321    KNC32319.1    CH964232    EDW81196.1    CH479179    EDW24431.1    JXJN01015472    LBMM01000915    KMQ97229.1    AXCM01000679    AXCN02000109    ADMH02000197    ETN67402.1    APCN01002209    AAAB01008851    EAA07351.5    CCAG010000199    GBHO01016271    JAG27333.1    NNAY01000427    OXU28485.1    GGMR01004106    MBY16725.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000030742    UP000235965    + More
UP000076502    UP000000311    UP000005203    UP000027135    UP000242457    UP000008237    UP000075809    UP000078542    UP000005205    UP000007755    UP000009046    UP000053825    UP000078540    UP000078541    UP000001292    UP000279307    UP000053097    UP000078492    UP000053105    UP000002358    UP000092462    UP000001819    UP000007801    UP000002282    UP000183832    UP000008711    UP000192221    UP000268350    UP000000803    UP000008820    UP000092553    UP000001070    UP000008792    UP000002320    UP000007266    UP000009192    UP000030765    UP000069940    UP000249989    UP000037069    UP000007798    UP000008744    UP000075884    UP000095300    UP000075881    UP000095301    UP000075900    UP000075880    UP000092460    UP000036403    UP000075883    UP000075920    UP000075886    UP000069272    UP000091820    UP000000673    UP000092445    UP000078200    UP000075840    UP000076407    UP000076408    UP000007062    UP000092444    UP000075882    UP000075885    UP000215335    UP000075902   

PRIDE

H9J9Z3    Q8MSN3    Q9VCD1   

Pfam

PF10500   SR-25        + More
PF00561   Abhydrolase_1

Interpro

IPR019532   Nucl_RNA-splicing_assoc_SR-25        + More
IPR029058   AB_hydrolase       
IPR000073   AB_hydrolase_1       

SUPFAM

SSF53474   SSF53474       

Gene 3D

3.40.50.1820    

ProteinModelPortal

H9J9Z3   A0A2W1C1S3   A0A2H1WN22   A0A194QHD9   A0A2A4K9L5   A0A2A4KAK9   + More
A0A212FGJ2   U4UUM7   A0A2J7RAI3   A0A154PFW9   A0A1B6DR95   A0A1Y1KLC3   E2B1W1   A0A088AIK1   A0A067RCM1   A0A1Y1KP05   A0A2A3ELA4   E2BI77   E9J840   A0A151WFQ2   A0A151IGA7   A0A158NCC9   F4WWW8   E0VQE7   A0A0L7RDF9   A0A195BX65   A0A195FA33   B4HGI0   A0A3L8DJD9   A0A026VX42   A0A151JRC7   W8BFI9   A0A0M9A7A4   A0A310SIL3   K7J1S2   A0A1B0DFF2   A0A0R3NM45   A0A034W3Q4   Q8MSN3   W8B8C7   A0A0P8YHI3   B4PL19   A0A1J1HJW0   B3P794   A0A1W4V4Y4   A0A1S4FNQ4   A0A3B0JKG4   Q298K1   A0A3B0KAL6   B3M0M2   Q9VCD1   A0A0K8WED7   A0A0K8UUX9   Q16UG5   A0A0M5JCU3   B4JIG6   B4MBY9   B0W3H0   A0A0A9Y2R0   A0A146MI46   D6WAQ4   B4K7D8   A0A084WV24   A0A023F204   A0A182GEU3   A0A1S4HI61   A0A0L0CLJ9   B4NBN2   B4G420   A0A182NKX5   A0A1I8Q0E1   A0A182KFC9   A0A1I8MNC7   A0A182R837   A0A182J463   A0A1B0BJN2   A0A0J7L423   A0A182MK66   A0A182VSA1   A0A182Q9W2   A0A182F8K7   A0A1A9X182   W5JSS1   A0A1A9ZLB0   A0A1A9VR09   A0A182HJV1   A0A182XK40   A0A182YM45   Q7QDG9   A0A1B0G867   A0A182KX30   A0A182PN00   A0A0A9Y8A8   A0A232FCT5   A0A182U1F7   A0A2S2NHV3  

PDB

5TBY     E-value=5.41598e-07,     Score=131

KEGG

101735863    K16469 rootletin | (RefSeq) rootletin

GO

GO:0035253   GO:0007638   GO:0032053   GO:0031223   GO:0050975   GO:0007605  

Length:

760

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00009

outside

1  -  760

 

 

Pi

15.79138

Theta

17.293243

Tajima's D

-0.577937

CLR

0.524448

CSRT

0.224538773061347

Interpretation

Uncertain