Gene

KWMTBOMO03636

Pre Gene Modal

BGIBMGA006337

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_rootletin-like_[Papilio_polytes]

Location

Bomo_Chr6(+):14039335-14044358      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.053

CDS

ATGGATTCTCCAGCGGGCAGTGTTGGTAGTGACTTGAGACGTCAGAATGAAGAGCTTCGTGCACGTCTTGCTGGAGAGGCGGCAGATCATAAGCGTCGTCTCGACGCGTATCGTCGTGCTCAGCAAGGCCAAGCTGCATTAGTATCGAGACTGCAAGCTAAAGTTTTGCAGTACAAGCAACGATGTGCGGAGCTCGAAAGTCACATGCTGGAGACACCCCGAAGCGAGGGTTATCGCACCAGCACGGCGCTGCAGCCGGCCGCTCTTCCCGCACCGTCGCCGCCTTCCACCGATTCGCGCAGGGATGAACGCATTAACGACTTGGAGACTGCTCTGCGTCGACTGGACGAGGAGAAACGCAAGTGTGAGAAGCTGGTAGCCCAGAATAATCTACTCCGAGAGCAACTGGAGGAGTCTCATCAGCTAAATGAAGCTCTGACAGGTGACTTGCAGAAACTGACCAATGATTGGGAGGCTCTGAGAGACGAGATGGCAGTCAAGGAGGATGAATGGAAAGATGAAGAACAGGCTTTCAATGACTACTATTCCAGCGAGCATAACCGTCTGCTAAGTCTGTGGCGCGAGGTGGTGTCTGTGAAGCGTTTCTTCTCCGAACTGCAGTCCAACACGGAACGAGATCTGTATCGGGTCAAGAACGACTTTGATTCATCTGTTAGGGAGCTTGTTGGATCATTGAGTGGATATGCTATCAATGCATTTGCAGCTCAAGGAAGTAAGGGCGAACCTCAAGCTTCAGTCGTGAGTTCGACCGCGCCAGACGTTGGAACAGTCGAAACGTTACGAGTGGAGCTCCGGGAGGTCGCCGCGCAGCGTGAGCACGCCCTGGCCGAGCTGCGGGAGCGGGACGCCCGGATACAACGGCAATAA

Protein

MDSPAGSVGSDLRRQNEELRARLAGEAADHKRRLDAYRRAQQGQAALVSRLQAKVLQYKQRCAELESHMLETPRSEGYRTSTALQPAALPAPSPPSTDSRRDERINDLETALRRLDEEKRKCEKLVAQNNLLREQLEESHQLNEALTGDLQKLTNDWEALRDEMAVKEDEWKDEEQAFNDYYSSEHNRLLSLWREVVSVKRFFSELQSNTERDLYRVKNDFDSSVRELVGSLSGYAINAFAAQGSKGEPQASVVSSTAPDVGTVETLRVELREVAAQREHALAELRERDARIQRQ

Uniprot

H9J9Z2   A0A194QHD9   A0A0L7LSY8   A0A2A4K970   A0A2W1C076   A0A2H1WXV7   + More
A0A212FGJ2   A0A194R6L4   A0A2J7RAH3   A0A067RCM1   E2BI77   E2B1W1   A0A0J7L423   D6WAQ4   A0A3L8DJD9   A0A026VX42   N6TRB0   U4UL80   A0A154PFW9   A0A158NCC9   A0A310SIL3   A0A0L7RDF9   A0A0M9A7A4   A0A088AIK1   E9J840   A0A195BX65   A0A1J1HJW0   A0A023F204   A0A2A3ELA4   A0A3Q0IXU3   A0A151IGA7   A0A195FA33   A0A1A9XI19   A0A151WFQ2   A0A1B0BJN2   A0A1B0G867   A0A1A9ZLB0   A0A1A9VR09   F4WWW8   A0A1Y1KLB0   A0A232FCT5   T1IC61   K7J1S2   A0A1A9X182   E0VQE7   B4NBN2   B4G420   B4HGH9   A0A1I8Q0E1   Q298K1   A0A0M5JCU3   B4JIG6   A0A151JRC7   A0A0K8WED7   A0A0K8UUX9   A0A146MI46   A0A1Y1KP05   B4MBY9   A0A0A1XK31   A0A0L0CLJ9   A0A1I8MNC7   B4K7D8   A0A3B0JKG4   A0A3B0KAL6   A0A2S2Q572   J9K2K6   A0A2R7WHD7   W8B8C7   V9KZQ6   V9K942   A0A1S3HLZ9   A0A1S3HNJ8   A0A1S3P477   A0A1S3JC29  

Pubmed

19121390    26354079    26227816    28756777    22118469    24845553    + More
20798317    18362917    19820115    30249741    24508170    23537049    21347285    21282665    25474469    21719571    28004739    28648823    20075255    20566863    17994087    15632085    26823975    25830018    26108605    25315136    24495485    24402279   

EMBL

BABH01026096    BABH01026097    KQ459011    KPJ04350.1    JTDY01000164    KOB78494.1    + More
NWSH01000017    PCG80771.1    KZ149893    PZC78917.1    ODYU01011899    SOQ57905.1    AGBW02008658    OWR52848.1    KQ460647    KPJ13159.1    NEVH01006569    PNF37836.1    KK852593    KDR20670.1    GL448457    EFN84608.1    GL444981    EFN60317.1    LBMM01000915    KMQ97229.1    KQ971312    EEZ97966.2    QOIP01000008    RLU19968.1    KK107648    EZA48327.1    APGK01023338    APGK01023339    APGK01023340    APGK01023341    APGK01023342    KB740484    ENN80568.1    KB632375    ERL93852.1    KQ434896    KZC10776.1    ADTU01011816    KQ760869    OAD58796.1    KQ414614    KOC68883.1    KQ435720    KOX78690.1    GL768788    EFZ11012.1    KQ976396    KYM92885.1    CVRI01000006    CRK87834.1    GBBI01003763    JAC14949.1    KZ288222    PBC32052.1    KQ977728    KYN00257.1    KQ981727    KYN37072.1    KQ983211    KYQ46667.1    JXJN01015472    CCAG010000199    GL888417    EGI61211.1    GEZM01080365    JAV62193.1    NNAY01000427    OXU28485.1    ACPB03006184    DS235418    EEB15603.1    CH964232    EDW81196.1    CH479179    EDW24431.1    CH480815    EDW43432.1    CM000070    EAL27948.1    CP012526    ALC47431.1    CH916369    EDV93047.1    KQ978602    KYN29933.1    GDHF01003104    JAI49210.1    GDHF01021837    JAI30477.1    GDHC01000213    JAQ18416.1    GEZM01080366    JAV62191.1    CH940656    EDW58610.1    GBXI01002558    JAD11734.1    JRES01000321    KNC32319.1    CH933806    EDW14262.1    OUUW01000007    SPP82715.1    SPP82716.1    GGMS01003538    MBY72741.1    ABLF02033859    KK854827    PTY19062.1    GAMC01009090    JAB97465.1    JW871463    AFP03981.1    JW861739    AFO94256.1   

Proteomes

UP000005204    UP000053268    UP000037510    UP000218220    UP000007151    UP000053240    + More
UP000235965    UP000027135    UP000008237    UP000000311    UP000036403    UP000007266    UP000279307    UP000053097    UP000019118    UP000030742    UP000076502    UP000005205    UP000053825    UP000053105    UP000005203    UP000078540    UP000183832    UP000242457    UP000079169    UP000078542    UP000078541    UP000092443    UP000075809    UP000092460    UP000092444    UP000092445    UP000078200    UP000007755    UP000215335    UP000015103    UP000002358    UP000091820    UP000009046    UP000007798    UP000008744    UP000001292    UP000095300    UP000001819    UP000092553    UP000001070    UP000078492    UP000008792    UP000037069    UP000095301    UP000009192    UP000268350    UP000007819    UP000085678    UP000087266   

PRIDE

H9J9Z2   

Interpro

IPR026733   Rootletin       

ProteinModelPortal

H9J9Z2   A0A194QHD9   A0A0L7LSY8   A0A2A4K970   A0A2W1C076   A0A2H1WXV7   + More
A0A212FGJ2   A0A194R6L4   A0A2J7RAH3   A0A067RCM1   E2BI77   E2B1W1   A0A0J7L423   D6WAQ4   A0A3L8DJD9   A0A026VX42   N6TRB0   U4UL80   A0A154PFW9   A0A158NCC9   A0A310SIL3   A0A0L7RDF9   A0A0M9A7A4   A0A088AIK1   E9J840   A0A195BX65   A0A1J1HJW0   A0A023F204   A0A2A3ELA4   A0A3Q0IXU3   A0A151IGA7   A0A195FA33   A0A1A9XI19   A0A151WFQ2   A0A1B0BJN2   A0A1B0G867   A0A1A9ZLB0   A0A1A9VR09   F4WWW8   A0A1Y1KLB0   A0A232FCT5   T1IC61   K7J1S2   A0A1A9X182   E0VQE7   B4NBN2   B4G420   B4HGH9   A0A1I8Q0E1   Q298K1   A0A0M5JCU3   B4JIG6   A0A151JRC7   A0A0K8WED7   A0A0K8UUX9   A0A146MI46   A0A1Y1KP05   B4MBY9   A0A0A1XK31   A0A0L0CLJ9   A0A1I8MNC7   B4K7D8   A0A3B0JKG4   A0A3B0KAL6   A0A2S2Q572   J9K2K6   A0A2R7WHD7   W8B8C7   V9KZQ6   V9K942   A0A1S3HLZ9   A0A1S3HNJ8   A0A1S3P477   A0A1S3JC29  

KEGG

NA   

GO

GO:0035253   GO:0050975   GO:0007605   GO:0032053   GO:0031223   GO:0007098  

PANTHER

PTHR23159:SF34  

Length:

295

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00114

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01386

outside

1  -  295

 

 

Pi

19.4707

Theta

23.028085

Tajima's D

-1.058543

CLR

0.682171

CSRT

0.127143642817859

Interpretation

Uncertain