Gene

KWMTBOMO03633

Pre Gene Modal

BGIBMGA006258

Annotation

PREDICTED:_TELO2-interacting_protein_1_homolog_[Bombyx_mori]

Location

Bomo_Chr6(-):13947114-13969387      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.029 PlasmaMembrane   Reliability : 1.037

CDS

ATGAATCCTGTTTTAAAAGAAGCTTTTAATCGTATTAAGCCTGTTTGCGACATGCTTATGGTATGTCCCACGGCAGATACTGTCTCAAACTTCGTTAATAAGATAACAAAATTAAAGAAAGATGTTGTGCAAGAACTACAGCAGTATTTGTTGTTCCCTTTCATAACTCATATTAGTTCGACGGAAATCGAAACAAAATATGGACTGCAAAGAAAACTTGTAGATGGCATGAGGGCAGTATTGGAAAGAGTCACAGTGAACAGTTTTGAGATGTGCATGAAAATTGAAATCGGCTTACTGCAACTGGTCTTTGATAAAGACAGGCCGGGGATGATTGCAGAAATCCCAGAGGAGTTGAAACTCAGTGTTATGTTGAGCCTCACAGTACTGATGCTCAATATGGACAAGAAATTCAGGGAGAAACTGATGAAGACCCAGGTTCCATTACTGGCACAAGCTGTGTTTGTTGCTGTCCACATTGCCAAACTCGACCGGCTTAGGGCTCTAAGATTGGCAGCGATCCACTGCGTGACTGCGCACACCGGAACACACGCCAGTCAAACTGACGATTACAGCATCAAGGATCCGGTCATAGAGAAAGCCGTGGTTGATATGCTGTCCAGCATATTGCCAGGGGTGCTAGCTGGGCTGCAAGACGTAGCCACTTGTGCTGATAATCCAGGACACGGTGTTATTGTGGCCGCTATAGACGCGATCCACAGGATACTTTGCATCACGATGCACGATAAGTTTCTTTACAAGAAATCCGAGTACACGGCCGATGATTTCGCAAAGATGTACCTCGAAAAGACTAAAGACAAGGTTGACACAGAAGTAAGCAGTAAGAAGCCGAAGGAGATAACGAAAAGGAGCCCGGAATGGTACACGATGGCCGGCGACAAGCTAATGCTGGTCACGAAGAGCCTGATAGCGCTGAGGACCCACGAGCACCACAAGGTCAGGAAGGAGCTGTCCGTTTTCTGCTCGAGGTTGCTGACCGAATGCAATACAACAATGCAGCCTTCGATACCACTCGCCTTGGACGTCCTCATAGCTCTGTCTAAAGACGAATACAGTCAAGTGTCGGACTACTGCGCGACGGCAGTGTCCACGTACTTCTCGACGGCTGCCAAGGACGCCAAGAACAAGACCATGGACAGCTTGTGCGAGAATTTCTTTACTACCCTCACATGTCTGCCGAGAGTCTTAAATAACGTAGATTCAGCTCGCAAACTGTCGACCCTGAACCTGCTGCACGGCTACATCCAGGTGCTGGGGTCAGAGCCGCCCCCCCAGCGCGTGGTGTCGGCGCTCAGCGTGCACACCAACATGCAGTGTCTGTGCAACGCGCTGCTCGAGGCCGCCGCCCTCGACGCCGACCTCACGCTGCTCAGCACCGTCGCCACCAGAGACGTGCTGGCGGGCGCGGTGACCGACTCGCCGTGGGTGCGGCCGCGGTGCGTGCCGGCGGGGGGACTGCGGCGGGTGGCGGCGTGCGTGCGGGGTCTGGCTGCGACCCGCGCTGCAGACTTGCTCGCCGACCGCCTCATGCAGGTTGCGCTGCAGCACAAACTGCCTGACGCCTTCCTACTCCTCAATTGGATCGGATCGGAACCAAAAGCGCCGACATCTCTAATAGAACGAATACTGAACCTGTACATACAAGAGGACATGTGGTACCTCCCGCTGGAGGTGGGCGGAGGCGAGGCGCCCCTCACCAGCGCCGACACGCTCGACGTCTCCGTGTACGACCCCAGGGCCTGGCACCGGGACAGCGTGCCCGGGCTGTACGAGGGCGCCACGGAGACCCGCTACACGGACATCAGCTACAGGACGCCGCGCGCCGCGCCGCCCCCGCGCACCACGCTGCGGGAGGCGCAGCGGAACATGCTGGTCTCCTGCCTCCTCACCGAGGGCGTGGGCATGTTCGCGCTCACCCTCAACGAGCACTACCAGCCCTACCTCATGAAGGTGCTGTGCCTGGTGCTGGAGAGGATCAGCAGCCCGTACGAGCTGCTCCACCAGGCGGGGCTGAAGGCGGTGGGCAGCATCACGGCGGCCGCGGGGCACGCCGGCCCGGCCGACCTCATCCGCTGCAACGCCGACTACCTCACCAACCAGATCACCAGGAGACTCAAGAAGGCGTGGGACTGCGAGTCGGCGCTGCAGATATTATCTGTGGTCATGGAGTACAGTGACGTCACTATGCTGGATTACATGTACGGAATAGTTGAAGACGTCCTAGTCCAGAGCTGCGACAAGTATTACGACAGGAATTTAGAATCTTACCTGCAAGTGTTTATTACTTTCATCGAATGCCTACAAAAGTGGTTCAAGGATGAGGATAACACGGATTCGAAGCCGCCGGAGCGAGGCCTCGACCTCCTGGAGGACGTCCGGGAGTACTGCAGGAATCAACAGGAGGCGGAGAGGCTGCTGAACGAGGAGGAGCCTCCGGGGGGCGGCCAGAGCGCGGAGGAGATGTACCGGGAGGACCGGGCCGCCGAGCTAGACGACGCGGCAGATTACGGCGATGCTGTTACGAATGAAGAGGCGCCGGTAGCTCGTCACCTGAGTGTGACCGCGGCCATAGTGCGGCGCTGCGTGCGCGGGGCGGCGGGCGCGCGCGGGGCGGCGGCGGCGCTGCGGGCGGCGGGGGGCGGGCTGCGCGTGCTGCGGGGCTCGGCGCTGCTGCTGCCGCTCGTGCACGCCGCCTGGCCGCCGCTCGTCCACAGATTTGAAGAAGGCGATCCTATAATCATGCGGTGGGCGATAGAGTTGCTCGTCACGATGGCTTCCGTCTCAAAGGACTTCATCAGGGCCAGAGCTATCAAAGAAGTCCTGCCGCACATTTACCGGTTTCTGAAGAAGTCTTCGAGAGACAGTTACCTGAAGGACGCGGGCTCCTCGTACCGACTGAGCCTTGCGTTCGCGCTGCAGCTGTGCTCGCTGCGCGCGCTGCCGCGGCTGGCGCCCGACCTGGCGCTGGCCCGCGAGCCGCTGGAGGACGCCATGCACAGCGTCGACCCCTACCTCTCCAAGAAACAGCCCAAGCCCTTGCAGGCGGCGGCCGTCAAGTTCTACGAGACGGTGCTAGAGTACGACTACGGCGCCGCCTGGCACCACCTGCGGAGGCTCTGCAGGAACGACGCCGTGCTGCGGCCCAGGGACCCCAGCCTCGCGCCCGTCGTCGGCACGCCCTTCCAACCCAAGAACAAGAACTATGAGAACAATATCAAACTAATATTCAATTTTGAGGTCTCGTAA

Protein

MNPVLKEAFNRIKPVCDMLMVCPTADTVSNFVNKITKLKKDVVQELQQYLLFPFITHISSTEIETKYGLQRKLVDGMRAVLERVTVNSFEMCMKIEIGLLQLVFDKDRPGMIAEIPEELKLSVMLSLTVLMLNMDKKFREKLMKTQVPLLAQAVFVAVHIAKLDRLRALRLAAIHCVTAHTGTHASQTDDYSIKDPVIEKAVVDMLSSILPGVLAGLQDVATCADNPGHGVIVAAIDAIHRILCITMHDKFLYKKSEYTADDFAKMYLEKTKDKVDTEVSSKKPKEITKRSPEWYTMAGDKLMLVTKSLIALRTHEHHKVRKELSVFCSRLLTECNTTMQPSIPLALDVLIALSKDEYSQVSDYCATAVSTYFSTAAKDAKNKTMDSLCENFFTTLTCLPRVLNNVDSARKLSTLNLLHGYIQVLGSEPPPQRVVSALSVHTNMQCLCNALLEAAALDADLTLLSTVATRDVLAGAVTDSPWVRPRCVPAGGLRRVAACVRGLAATRAADLLADRLMQVALQHKLPDAFLLLNWIGSEPKAPTSLIERILNLYIQEDMWYLPLEVGGGEAPLTSADTLDVSVYDPRAWHRDSVPGLYEGATETRYTDISYRTPRAAPPPRTTLREAQRNMLVSCLLTEGVGMFALTLNEHYQPYLMKVLCLVLERISSPYELLHQAGLKAVGSITAAAGHAGPADLIRCNADYLTNQITRRLKKAWDCESALQILSVVMEYSDVTMLDYMYGIVEDVLVQSCDKYYDRNLESYLQVFITFIECLQKWFKDEDNTDSKPPERGLDLLEDVREYCRNQQEAERLLNEEEPPGGGQSAEEMYREDRAAELDDAADYGDAVTNEEAPVARHLSVTAAIVRRCVRGAAGARGAAAALRAAGGGLRVLRGSALLLPLVHAAWPPLVHRFEEGDPIIMRWAIELLVTMASVSKDFIRARAIKEVLPHIYRFLKKSSRDSYLKDAGSSYRLSLAFALQLCSLRALPRLAPDLALAREPLEDAMHSVDPYLSKKQPKPLQAAAVKFYETVLEYDYGAAWHHLRRLCRNDAVLRPRDPSLAPVVGTPFQPKNKNYENNIKLIFNFEVS

Uniprot

H9J9R5   A0A2W1BX73   A0A194QFT2   A0A194R5S1   A0A2A4KAI0   A0A3S2N5D7   + More
A0A212F169   A0A310S781   A0A3L8DSE4   E2AUE0   A0A2A3ER19   A0A151WV40   A0A0M8ZXQ2   K7J0N1   A0A195CPZ2   A0A151JVA4   A0A151J8T5   A0A195BKW9   A0A3Q0JLD2   A0A158P3X3   F4WKU8   A0A0C9RAW0   D6WAQ7   A0A1I8Q7I8   A0A1I8N890   A7SVB4   Q9VH80   B4QVZ1   B4JV75   B4PVE3   B4HJT9   A0A0M4F254   B4G557   Q299G8   A0A3B0K0F1  

Pubmed

19121390    28756777    26354079    22118469    30249741    20798317    + More
20075255    21347285    21719571    18362917    19820115    25315136    17615350    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    17550304    15632085   

EMBL

BABH01026089    KZ149893    PZC78921.1    KQ459011    KPJ04347.1    KQ460647    + More
KPJ13163.1    NWSH01000017    PCG80740.1    RSAL01000394    RVE41981.1    AGBW02010943    OWR47479.1    KQ775195    OAD52266.1    QOIP01000005    RLU23093.1    GL442815    EFN62997.1    KZ288197    PBC33712.1    KQ982708    KYQ51800.1    KQ435801    KOX73245.1    KQ977513    KYN02179.1    KQ981701    KYN37479.1    KQ979480    KYN21267.1    KQ976453    KYM85327.1    ADTU01008609    GL888206    EGI65190.1    GBYB01005450    JAG75217.1    KQ971312    EEZ98668.1    DS469831    EDO32342.1    AE014297    AAF54439.1    CM000364    EDX13571.1    CH916374    EDV91395.1    CM000160    EDW96716.1    CH480815    EDW42823.1    CP012526    ALC45462.1    CH479179    EDW24723.1    CM000070    EAL27735.2    OUUW01000013    SPP87785.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000283053    UP000007151    + More
UP000279307    UP000000311    UP000242457    UP000075809    UP000053105    UP000002358    UP000078542    UP000078541    UP000078492    UP000078540    UP000079169    UP000005205    UP000007755    UP000007266    UP000095300    UP000095301    UP000001593    UP000000803    UP000000304    UP000001070    UP000002282    UP000001292    UP000092553    UP000008744    UP000001819    UP000268350   

PRIDE

H9J9R5    Q9VH80   

Pfam

PF01974   tRNA_int_endo

Interpro

IPR016024   ARM-type_fold        + More
IPR011989   ARM-like       
IPR006676   tRNA_splic       
IPR036167   tRNA_intron_Endo_cat-like_sf       
IPR011856   tRNA_endonuc-like_dom_sf       
IPR006677   tRNA_intron_Endonuc_cat-like       
IPR016441   Tti1       

SUPFAM

SSF48371   SSF48371        + More
SSF53032   SSF53032       

Gene 3D

1.25.10.10     3.40.1350.10    

ProteinModelPortal

H9J9R5   A0A2W1BX73   A0A194QFT2   A0A194R5S1   A0A2A4KAI0   A0A3S2N5D7   + More
A0A212F169   A0A310S781   A0A3L8DSE4   E2AUE0   A0A2A3ER19   A0A151WV40   A0A0M8ZXQ2   K7J0N1   A0A195CPZ2   A0A151JVA4   A0A151J8T5   A0A195BKW9   A0A3Q0JLD2   A0A158P3X3   F4WKU8   A0A0C9RAW0   D6WAQ7   A0A1I8Q7I8   A0A1I8N890   A7SVB4   Q9VH80   B4QVZ1   B4JV75   B4PVE3   B4HJT9   A0A0M4F254   B4G557   Q299G8   A0A3B0K0F1  

KEGG

101735592    K20403 TELO2-interacting protein 1 | (RefSeq) TELO2-interacting protein 1 homolog

GO

GO:0003676   GO:0000213   GO:0006388   GO:0070209   GO:0031932   GO:0032006   GO:0005737   GO:0031931   GO:0005488   GO:0000166   GO:0051082   GO:0004674   GO:0005515   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

Length:

1088

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.170260000000001

Exp number, first 60 AAs:

0.0034

Total prob of N-in:

0.00792

outside

1  -  1088

 

 

Pi

19.303687

Theta

18.06873

Tajima's D

0.552825

CLR

0.425562

CSRT

0.535773211339433

Interpretation

Uncertain