Gene

KWMTBOMO03632  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006333

Annotation

PREDICTED:_ER_membrane_protein_complex_subunit_1_[Amyelois_transitella]

Location

Bomo_Chr6(+):13932748-13936487      View in EpiBrowser

Full name

DNA-directed RNA polymerase subunit beta      

Location in the cell

Mitochondrial   Reliability : 1.158 PlasmaMembrane   Reliability : 1.49

CDS

ATGACAATAAATAATAATGTTAATTACAATCAATCCTACGTGGTGGTGGCGACGTGCGTGGACGGCGTATCGGGCGGCGTGCTGAGCGCGCACGTGCACCGGCGCGCGCGCCGCCCCGCGCTCCCGCTGCACTCCGAGCACTTCCTCGCCTACCTCTACTACAACGACAAGCAGCGCCGCCACGAGATCGCCACCCTGGAGCTGTACGAGGGCCCGGAGCGCTGGGTGCCGGCGGGCGCGGCGTTCAGCTCGCTGCGGGGGGCGCGCGCGCCGCACGTGCAGCGCCACGCCTACATCGTGCCCGCCGCGCCCGCCGCCGCCGCGCTCTCCGCCACCGAGCGCTCGCTCACCGACAAGCACGTGCTGCTGGCGCTGAGCACGGGCGCGATCGTGGAGCTGCCGTGGGCGCTGCTGGAGCCCCGGCGCGCGCTGTCCCCGGCGGGCGAGGCGCGCGAGGAGGGCCTGGTGCCCTACGCGCCCGAGCTGCCGCTGCCCGCCGAGGCCGTCGTCAACTACAACGCGACGCTGCTCCGCCTCACCCGCATACACACCGCGCCCTCCGGACTCGAGTCCACCAGCCTCGTGCTCGCCACCGGACTGGACCTGTTCTACACGAGGATAGCTCCGTCAAAGACCTTCGACCTTCTCAAGGACGACTTCGACTACTACCTCATCAGCGTAGTGCTCGCCGCGCTGGTGCTCGCCACGTACAGCACCAAGTACTTCGCTGCGAGGAAGATGCTAAAGATGGCCTGGAAGTGA

Protein

MTINNNVNYNQSYVVVATCVDGVSGGVLSAHVHRRARRPALPLHSEHFLAYLYYNDKQRRHEIATLELYEGPERWVPAGAAFSSLRGARAPHVQRHAYIVPAAPAAAALSATERSLTDKHVLLALSTGAIVELPWALLEPRRALSPAGEAREEGLVPYAPELPLPAEAVVNYNATLLRLTRIHTAPSGLESTSLVLATGLDLFYTRIAPSKTFDLLKDDFDYYLISVVLAALVLATYSTKYFAARKMLKMAWK

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Similarity

Belongs to the RNA polymerase beta chain family.

Uniprot

H9J9Y8   A0A3S2P514   A0A2W1BV10   A0A2H1W3B7   A0A194QLM5   A0A0L7LQE4   + More
A0A212F160   W8BBF4   W8BGF1   A0A0A1WRR8   A0A0K8UGD2   A0A034VDT6   A0A0K8UWL7   A0A0K8VNH1   A0A034VEG2   W8B4F5   W8BRX2   B4N8D1   A0A1A9WFN0   T1HEQ0   A0A0Q9X016   B4K7I9   B4JI35   A0A1B0BY71   Q95TQ6   A0A1B6DQ56   A0A1B6CDR2   B4M0U9   F0JAM8   A0A0C9QT61   A0A3B0KJW6   A0A1I8PCX5   A0A1I8PCW9   A0A1I8PCT7   A0A2J7PZI0   A0A1I8PCM2   A0A1B0D303   A0A0P9AQU3   B3LXF8   Q294L3   B4GMY0   I5APS5   B4R0B0   B4I4Y5   A0A1B6G4V2   A0A0B4LGV1   Q9VHY6   B3NYS9   A0A1W4VLW5   A0A1W4VZ61   A0A1B6KS38   B4PRD5   A0A1B6LTB9   A0A224XJP5   A0A0L0CKJ4   A0A1L8D938   A0A1L8D9I9   A0A1L8D9B0   A0A1L8D943   A0A0K8T908   A0A0K8TA52   A0A1I8MY05   T1PCK1   A0A146LUI5   A0A0A9WW35   A0A146LR23   A0A0A9YLC5   U5ER11   A0A336LDR2   K7J0N0   A0A154NWQ5   A0A2M3Z3W4   A0A2M3Z3V8   Q17EK4   A0A1S4F5Q7   A0A2M4ABB0   W5JK68   A0A2M4AAP1   A0A2M4AAV8   A0A0M4ERN6   A0A2M4BCP9   A0A194R6L9   A0A2A3ERP5   A0A088AG65   A0A0L7QLM8   A0A182FPR1   A0A1Q3FAS1   A0A182H0U9   A0A2R7VZ97   A0A0J7L1G5   A0A1Q3FB81   A0A1Q3FAA5   B0X5B3   A0A336LFU6   A0A1Q3FAM0   A0A310S4S8   A0A084VTM6   A0A151J8V7   A0A151JW05   A0A195CNE0  

EC Number

2.7.7.6

Pubmed

19121390    28756777    26354079    26227816    22118469    24495485    + More
25830018    25348373    17994087    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    26108605    25315136    26823975    25401762    20075255    17510324    20920257    23761445    26483478    24438588   

EMBL

BABH01026085    BABH01026086    RSAL01000394    RVE41980.1    KZ149893    PZC78922.1    + More
ODYU01006057    SOQ47579.1    KQ459011    KPJ04346.1    JTDY01000336    KOB77645.1    AGBW02010943    OWR47480.1    GAMC01010548    JAB96007.1    GAMC01010547    JAB96008.1    GBXI01013006    GBXI01008352    JAD01286.1    JAD05940.1    GDHF01026939    GDHF01009119    JAI25375.1    JAI43195.1    GAKP01019003    GAKP01018997    JAC39955.1    GDHF01021328    JAI30986.1    GDHF01011887    JAI40427.1    GAKP01019001    GAKP01018999    GAKP01018996    GAKP01018994    JAC39953.1    GAMC01010550    JAB96005.1    GAMC01010549    JAB96006.1    CH964232    EDW81382.1    ACPB03020163    ACPB03020164    CH933806    KRG01519.1    EDW15333.1    CH916369    EDV92916.1    JXJN01022510    AY058611    AAL13840.1    GEDC01009484    JAS27814.1    GEDC01025712    JAS11586.1    CH940650    EDW68408.2    BT126070    ADY17769.1    GBYB01003802    JAG73569.1    OUUW01000008    SPP84058.1    NEVH01020334    PNF21748.1    AJVK01010809    AJVK01010810    CH902617    KPU79929.1    EDV42802.1    CM000070    EAL28951.2    CH479185    EDW38204.1    EIM52960.1    CM000364    EDX12035.1    CH480821    EDW55278.1    GECZ01012358    GECZ01011298    JAS57411.1    JAS58471.1    AE014297    AHN57215.1    AHN57216.1    BT031325    AAF54161.1    ABY21738.1    AHN57214.1    CH954181    EDV48192.1    GEBQ01025737    JAT14240.1    CM000160    EDW96323.2    GEBQ01013046    JAT26931.1    GFTR01008197    JAW08229.1    JRES01000266    KNC32791.1    GFDF01011111    JAV02973.1    GFDF01011110    JAV02974.1    GFDF01011109    JAV02975.1    GFDF01011112    JAV02972.1    GBRD01003822    JAG61999.1    GBRD01003821    JAG62000.1    KA646419    AFP61048.1    GDHC01008579    JAQ10050.1    GBHO01031998    JAG11606.1    GDHC01009423    JAQ09206.1    GBHO01009737    JAG33867.1    GANO01003963    JAB55908.1    UFQS01003369    UFQT01003369    SSX15564.1    SSX34928.1    KQ434773    KZC03992.1    GGFM01002449    MBW23200.1    GGFM01002455    MBW23206.1    CH477282    EAT44875.1    GGFK01004577    MBW37898.1    ADMH02001205    ETN63708.1    GGFK01004499    MBW37820.1    GGFK01004569    MBW37890.1    CP012526    ALC47864.1    GGFJ01001683    MBW50824.1    KQ460647    KPJ13164.1    KZ288197    PBC33711.1    KQ414914    KOC59525.1    GFDL01010433    JAV24612.1    JXUM01101993    JXUM01101994    KQ564691    KXJ71894.1    KK854187    PTY12792.1    LBMM01001275    KMQ96597.1    GFDL01010292    JAV24753.1    GFDL01010578    JAV24467.1    DS232374    EDS40798.1    UFQS01003368    UFQT01003368    SSX15563.1    SSX34927.1    GFDL01010445    JAV24600.1    KQ775195    OAD52265.1    ATLV01016362    KE525079    KFB41320.1    KQ979480    KYN21266.1    KQ981701    KYN37481.1    KQ977513    KYN02180.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000037510    UP000007151    UP000007798    + More
UP000091820    UP000015103    UP000009192    UP000001070    UP000092460    UP000008792    UP000268350    UP000095300    UP000235965    UP000092462    UP000007801    UP000001819    UP000008744    UP000000304    UP000001292    UP000000803    UP000008711    UP000192221    UP000002282    UP000037069    UP000095301    UP000002358    UP000076502    UP000008820    UP000000673    UP000092553    UP000053240    UP000242457    UP000005203    UP000053825    UP000069272    UP000069940    UP000249989    UP000036403    UP000002320    UP000030765    UP000078492    UP000078541    UP000078542   

PRIDE

H9J9Y8    Q95TQ6    F0JAM8    Q9VHY6   

Pfam

PF13360   PQQ_2        + More
PF07774   EMC1_C
PF04561   RNA_pol_Rpb2_2
PF04565   RNA_pol_Rpb2_3
PF04567   RNA_pol_Rpb2_5
PF04563   RNA_pol_Rpb2_1
PF00562   RNA_pol_Rpb2_6
PF04566   RNA_pol_Rpb2_4
PF04560   RNA_pol_Rpb2_7

Interpro

IPR026895   EMC1        + More
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011678   EMC1_C       
IPR002372   PQQ_repeat       
IPR018391   PQQ_beta_propeller_repeat       
IPR007121   RNA_pol_bsu_CS       
IPR015712   DNA-dir_RNA_pol_su2       
IPR007647   RNA_pol_Rpb2_5       
IPR007642   RNA_pol_Rpb2_2       
IPR014724   RNA_pol_RPB2_OB-fold       
IPR037034   RNA_pol_Rpb2_2_sf       
IPR007644   RNA_pol_bsu_protrusion       
IPR037033   DNA-dir_RNAP_su2_hyb_sf       
IPR007120   DNA-dir_RNAP_su2_dom       
IPR007641   RNA_pol_Rpb2_7       
IPR007645   RNA_pol_Rpb2_3       
IPR007646   RNA_pol_Rpb2_4       

SUPFAM

SSF50998   SSF50998       

Gene 3D

2.130.10.10     2.40.270.10     2.40.50.150     3.90.1110.10    

CDD

cd00653  RNA_pol_B_RPB2

ProteinModelPortal

H9J9Y8   A0A3S2P514   A0A2W1BV10   A0A2H1W3B7   A0A194QLM5   A0A0L7LQE4   + More
A0A212F160   W8BBF4   W8BGF1   A0A0A1WRR8   A0A0K8UGD2   A0A034VDT6   A0A0K8UWL7   A0A0K8VNH1   A0A034VEG2   W8B4F5   W8BRX2   B4N8D1   A0A1A9WFN0   T1HEQ0   A0A0Q9X016   B4K7I9   B4JI35   A0A1B0BY71   Q95TQ6   A0A1B6DQ56   A0A1B6CDR2   B4M0U9   F0JAM8   A0A0C9QT61   A0A3B0KJW6   A0A1I8PCX5   A0A1I8PCW9   A0A1I8PCT7   A0A2J7PZI0   A0A1I8PCM2   A0A1B0D303   A0A0P9AQU3   B3LXF8   Q294L3   B4GMY0   I5APS5   B4R0B0   B4I4Y5   A0A1B6G4V2   A0A0B4LGV1   Q9VHY6   B3NYS9   A0A1W4VLW5   A0A1W4VZ61   A0A1B6KS38   B4PRD5   A0A1B6LTB9   A0A224XJP5   A0A0L0CKJ4   A0A1L8D938   A0A1L8D9I9   A0A1L8D9B0   A0A1L8D943   A0A0K8T908   A0A0K8TA52   A0A1I8MY05   T1PCK1   A0A146LUI5   A0A0A9WW35   A0A146LR23   A0A0A9YLC5   U5ER11   A0A336LDR2   K7J0N0   A0A154NWQ5   A0A2M3Z3W4   A0A2M3Z3V8   Q17EK4   A0A1S4F5Q7   A0A2M4ABB0   W5JK68   A0A2M4AAP1   A0A2M4AAV8   A0A0M4ERN6   A0A2M4BCP9   A0A194R6L9   A0A2A3ERP5   A0A088AG65   A0A0L7QLM8   A0A182FPR1   A0A1Q3FAS1   A0A182H0U9   A0A2R7VZ97   A0A0J7L1G5   A0A1Q3FB81   A0A1Q3FAA5   B0X5B3   A0A336LFU6   A0A1Q3FAM0   A0A310S4S8   A0A084VTM6   A0A151J8V7   A0A151JW05   A0A195CNE0  

KEGG

101742821    no KO assigned | (RefSeq) ER membrane protein complex subunit 1

GO

GO:0072546   GO:0016021   GO:0012505   GO:0006351   GO:0003899   GO:0032549   GO:0003677  

PANTHER

PTHR21573   PTHR20856  

Length:

253

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

42.33975

Exp number, first 60 AAs:

9.31684999999999

Total prob of N-in:

0.74551

outside

1  -  221

TMhelix

222  -  244

inside

245  -  253

 

 

Pi

19.611227

Theta

20.846141

Tajima's D

-0.725176

CLR

0.320485

CSRT

0.193440327983601

Interpretation

Uncertain