Gene

KWMTBOMO03631  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006333

Annotation

PREDICTED:_ER_membrane_protein_complex_subunit_1_[Papilio_xuthus]

Location

Bomo_Chr6(+):13920788-13930294      View in EpiBrowser

Full name

DNA-directed RNA polymerase subunit beta      

Location in the cell

PlasmaMembrane   Reliability : 1.869

CDS

ATGTGCATTTATGAGGATCAAATCGGGAAGTTTGACTGGCGCCAAAGCTATGTTGGGCGTATAAAGTTCGCCCAATTCGATACGGTTTCAACCGCCAGGAAGATAATAGTAGCGACCGAAGAGAATGTTTTAGCTGCACTCAATCTGAAGACAGGGCAGGTAGTGTGGAGGCATGTGTTTGAGAGTACATCTTCTGGCAACATCCAGTTGCTGCATCTATCAGATCAAATAATCACCGTGACGGGCTCCAATCCTTATCTCGTTAGGGGATGGGACTTGAGTACTGGCGTACTAATTTGGGAATGGGGCCTCACCCTCCAGAAGAATGAGCACACTGATTTCTCCGAATGGTGGGTTCAGAATGGTCTGCTTGTTCATATGGTGCCGAAATTTGGCTCTCACATTGAGGTCAGCGTCTACAATGTAGCTACTGGACATAATCGAGGAGCAACTTCGAAACTACCTGCTGTTTGGATCAATGAGGGCTGTGTCTTATCTCCACCATATTACACCTGTATCTCGGGATCACCCGGAAACCAGCTGCTCTTATCCATGGATGTTACGTCTGATGCTGTACAAATCATAAGCAAACCTTTAGCAGAATACACAACGGCAAGGAATGGAAACCTGAATCCCTTCGACACTAACACAGTCATACCAGGGTTTCTATTAAATGAAAAAATCATATTGATCCGTGGCAATAAGTTTGAAGCGATCAATATAGCTATCAGTGAGCCATCTGCAAGTGTTGCTCTTGTGGATAGCGCTAGCGGACCATTAGTTTTGCAGACTTGGAATGATGAGGCTAAGGGTTTCACCTTAATGGCCCACAATTTAGTTTCTGGGCAAAGAGTAAATGAGATTGGCTGGTCGGACCGCAGTCTGTCGATACCGGAGCCGGAGTTGTCTGCGGTGATTTGCACTAAGACAGCCAGGGAACAGCATGTATGCAGGATCCTGGTCACTGCTGCCGATGATGCCAGCCATTTGATACAGCAAGAAGGGAGAGTGCTATGGACTCGCGAGGAAGCCCTAGCCAATGTGGTGGCTGTCGAGTTTGTGGATTTGCCAGTGTCAGACTTGGACGCGGCTATTGAATCGGAATTTGATCAGAAAGAAGGTTCGGTACTGGCGGCGTTCACCCGGCGGCTGCAGAGTCAGTTCCAGCAGCTGCAGGGCGCGGTGCGGGCGCTGCTGGCGGGGGACGCGGCGGCCGCGGACGAGCCCCCGCCCCTCGTGCGCGACTACTTCAACCTGCACAAGATCATGGTGCTCCTGACGGACACCGGCAAGATCTTCGGCATGGACAATTTGTCGGGCGAGATACTGTGGAAGCTGTACGAGCCGAACCTGAACACGGAGGCGGCGGTCATGTTCACGCGGCGGTCGGCGCGCCACCCGCCGCACGACGCCTACCTCACCGTCGTCGGGAAACACGAGGAAACAGGCAACGGTCTGATCGTCAGTTTAAATCCGATCCGAGGCACTCCCGTCGGGGAGCAGACCTTGCACTTGGACGTGCAGATCTTACAATGTGCGGTCCTGTACAAAGCAGACGCTCAGAAGCTCCACGCGCTCATACTGCTCGATAAGGACGAGAACGTGCAGATCCTGCCGGAGTCCTCGGCGCCGCTGGTGGAGAACATGTACATGCACGTGGCCGACCGGAGCTCCGCCGTGGTCCGGGGCTACGCCCTGCGGCACGACGGAGAGGTGAGGTCAACGCTCCACACGGCCATTCTAGTATATGGACCTCGCGTATCACGATGTTTGCCCGAAACTAACAGCTGGTTTTTTTTTTTGGTTGCTTTGTTCCTCCTACTTTTGATGCAGGATATATAG

Protein

MCIYEDQIGKFDWRQSYVGRIKFAQFDTVSTARKIIVATEENVLAALNLKTGQVVWRHVFESTSSGNIQLLHLSDQIITVTGSNPYLVRGWDLSTGVLIWEWGLTLQKNEHTDFSEWWVQNGLLVHMVPKFGSHIEVSVYNVATGHNRGATSKLPAVWINEGCVLSPPYYTCISGSPGNQLLLSMDVTSDAVQIISKPLAEYTTARNGNLNPFDTNTVIPGFLLNEKIILIRGNKFEAINIAISEPSASVALVDSASGPLVLQTWNDEAKGFTLMAHNLVSGQRVNEIGWSDRSLSIPEPELSAVICTKTAREQHVCRILVTAADDASHLIQQEGRVLWTREEALANVVAVEFVDLPVSDLDAAIESEFDQKEGSVLAAFTRRLQSQFQQLQGAVRALLAGDAAAADEPPPLVRDYFNLHKIMVLLTDTGKIFGMDNLSGEILWKLYEPNLNTEAAVMFTRRSARHPPHDAYLTVVGKHEETGNGLIVSLNPIRGTPVGEQTLHLDVQILQCAVLYKADAQKLHALILLDKDENVQILPESSAPLVENMYMHVADRSSAVVRGYALRHDGEVRSTLHTAILVYGPRVSRCLPETNSWFFFLVALFLLLLMQDI

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Similarity

Belongs to the RNA polymerase beta chain family.

Uniprot

H9J9Y8   A0A2A4K944   A0A2W1BV10   A0A2H1W3B7   A0A194QLM5   A0A194R6L9   + More
A0A212F160   Q17EK4   A0A1S4F5Q7   A0A182H0U9   K7J0N0   A0A1Q3FAM0   A0A1Q3FAA5   U5ER11   A0A1B0CBG5   A0A151JW05   A0A151WVU0   A0A195CNE0   E2BNN6   A0A1Q3FB81   A0A026VYK6   A0A151J8V7   B0X5B3   E9J1N8   A0A195BJG3   A0A0C9QT61   A0A232FK94   A0A182QPM6   E2AUD9   A0A2A3ERP5   A0A1L8D943   A0A1L8D938   A0A0N0U4W1   A0A2M4AAP1   A0A2M4AAV8   A0A2M4BCP9   A0A1L8D9B0   A0A1L8D9I9   A0A3L8DS09   A0A2M4ABB0   A0A154NWQ5   A0A2J7PZI0   A0A182J9X6   A0A158P3X2   A0A1I8PCW9   A0A310S4S8   A0A182UXN8   A0A1I8PCM2   A0A1I8PCX5   A0A1I8PCT7   A0A088AG65   A0A182NML4   A0A182TH20   B4K7I9   A0A2C9GS09   A0A2M3Z3W4   A0A2M3Z3V8   Q5TT42   A0A182KXR6   A0A182P420   A0A1Y1KW78   A0A2C9H8I3   A0A182K4A1   A0A182VWY5   W8B4F5   W5JK68   B4N8D1   A0A182RFK9   A0A182M6M6   A0A1I8MY05   A0A0K8UGD2   T1PCK1   B4M0U9   A0A0Q9X016   A0A182FPR1   W8BRX2   A0A0A1WRR8   A0A0L0CKJ4   A0A084VTM6   A0A1W4WSM5   A0A336LFU6   D6WIT7   A0A0K8VNH1   E0VQF1   A0A0K8UWL7   B4JI35   I5APS5   A0A0B4LGV1   B4R0B0   A0A1W4VLW5   A0A1A9Z6J0   B4PRD5   A0A0P9AQU3   B4I4Y5   A0A3B0KJW6   A0A1B0FNC1   A0A1A9YI31   Q9VHY6  

EC Number

2.7.7.6

Pubmed

19121390    28756777    26354079    22118469    17510324    26483478    + More
20075255    20798317    24508170    21282665    28648823    30249741    21347285    17994087    12364791    14747013    17210077    20966253    28004739    24495485    20920257    23761445    25315136    25830018    26108605    24438588    18362917    19820115    20566863    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304   

EMBL

BABH01026085    BABH01026086    NWSH01000017    PCG80741.1    KZ149893    PZC78922.1    + More
ODYU01006057    SOQ47579.1    KQ459011    KPJ04346.1    KQ460647    KPJ13164.1    AGBW02010943    OWR47480.1    CH477282    EAT44875.1    JXUM01101993    JXUM01101994    KQ564691    KXJ71894.1    GFDL01010445    JAV24600.1    GFDL01010578    JAV24467.1    GANO01003963    JAB55908.1    AJWK01005131    AJWK01005132    AJWK01005133    AJWK01005134    AJWK01005135    AJWK01005136    KQ981701    KYN37481.1    KQ982708    KYQ51801.1    KQ977513    KYN02180.1    GL449438    EFN82684.1    GFDL01010292    JAV24753.1    KK107570    EZA48852.1    KQ979480    KYN21266.1    DS232374    EDS40798.1    GL767674    EFZ13178.1    KQ976453    KYM85326.1    GBYB01003802    JAG73569.1    NNAY01000105    OXU30919.1    AXCN02001597    GL442815    EFN62996.1    KZ288197    PBC33711.1    GFDF01011112    JAV02972.1    GFDF01011111    JAV02973.1    KQ435801    KOX73244.1    GGFK01004499    MBW37820.1    GGFK01004569    MBW37890.1    GGFJ01001683    MBW50824.1    GFDF01011109    JAV02975.1    GFDF01011110    JAV02974.1    QOIP01000005    RLU23092.1    GGFK01004577    MBW37898.1    KQ434773    KZC03992.1    NEVH01020334    PNF21748.1    ADTU01008608    KQ775195    OAD52265.1    CH933806    EDW15333.1    APCN01003235    GGFM01002449    MBW23200.1    GGFM01002455    MBW23206.1    AAAB01008888    EAL40608.3    GEZM01071966    JAV65649.1    GAMC01010550    JAB96005.1    ADMH02001205    ETN63708.1    CH964232    EDW81382.1    AXCM01006813    GDHF01026939    GDHF01009119    JAI25375.1    JAI43195.1    KA646419    AFP61048.1    CH940650    EDW68408.2    KRG01519.1    GAMC01010549    JAB96006.1    GBXI01013006    GBXI01008352    JAD01286.1    JAD05940.1    JRES01000266    KNC32791.1    ATLV01016362    KE525079    KFB41320.1    UFQS01003368    UFQT01003368    SSX15563.1    SSX34927.1    KQ971335    EEZ99650.1    GDHF01011887    JAI40427.1    DS235418    EEB15607.1    GDHF01021328    JAI30986.1    CH916369    EDV92916.1    CM000070    EIM52960.1    AE014297    AHN57215.1    AHN57216.1    CM000364    EDX12035.1    CM000160    EDW96323.2    CH902617    KPU79929.1    CH480821    EDW55278.1    OUUW01000008    SPP84058.1    CCAG010014739    BT031325    AAF54161.1    ABY21738.1    AHN57214.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000008820    + More
UP000069940    UP000249989    UP000002358    UP000092461    UP000078541    UP000075809    UP000078542    UP000008237    UP000053097    UP000078492    UP000002320    UP000078540    UP000215335    UP000075886    UP000000311    UP000242457    UP000053105    UP000279307    UP000076502    UP000235965    UP000075880    UP000005205    UP000095300    UP000075903    UP000005203    UP000075884    UP000075902    UP000009192    UP000075840    UP000007062    UP000075882    UP000075885    UP000076407    UP000075881    UP000075920    UP000000673    UP000007798    UP000075900    UP000075883    UP000095301    UP000008792    UP000069272    UP000037069    UP000030765    UP000192223    UP000007266    UP000009046    UP000001070    UP000001819    UP000000803    UP000000304    UP000192221    UP000092445    UP000002282    UP000007801    UP000001292    UP000268350    UP000092444    UP000092443   

PRIDE

H9J9Y8    Q9VHY6   

Pfam

PF13360   PQQ_2        + More
PF07774   EMC1_C
PF04563   RNA_pol_Rpb2_1
PF04560   RNA_pol_Rpb2_7
PF04566   RNA_pol_Rpb2_4
PF04567   RNA_pol_Rpb2_5
PF04565   RNA_pol_Rpb2_3
PF04561   RNA_pol_Rpb2_2
PF00562   RNA_pol_Rpb2_6

Interpro

IPR026895   EMC1        + More
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011678   EMC1_C       
IPR002372   PQQ_repeat       
IPR018391   PQQ_beta_propeller_repeat       
IPR014724   RNA_pol_RPB2_OB-fold       
IPR007641   RNA_pol_Rpb2_7       
IPR007644   RNA_pol_bsu_protrusion       
IPR037034   RNA_pol_Rpb2_2_sf       
IPR007645   RNA_pol_Rpb2_3       
IPR007646   RNA_pol_Rpb2_4       
IPR037033   DNA-dir_RNAP_su2_hyb_sf       
IPR007121   RNA_pol_bsu_CS       
IPR015712   DNA-dir_RNA_pol_su2       
IPR007647   RNA_pol_Rpb2_5       
IPR007120   DNA-dir_RNAP_su2_dom       
IPR007642   RNA_pol_Rpb2_2       

SUPFAM

SSF50998   SSF50998       

Gene 3D

2.130.10.10     2.40.270.10     2.40.50.150     3.90.1110.10    

CDD

cd00653  RNA_pol_B_RPB2

ProteinModelPortal

H9J9Y8   A0A2A4K944   A0A2W1BV10   A0A2H1W3B7   A0A194QLM5   A0A194R6L9   + More
A0A212F160   Q17EK4   A0A1S4F5Q7   A0A182H0U9   K7J0N0   A0A1Q3FAM0   A0A1Q3FAA5   U5ER11   A0A1B0CBG5   A0A151JW05   A0A151WVU0   A0A195CNE0   E2BNN6   A0A1Q3FB81   A0A026VYK6   A0A151J8V7   B0X5B3   E9J1N8   A0A195BJG3   A0A0C9QT61   A0A232FK94   A0A182QPM6   E2AUD9   A0A2A3ERP5   A0A1L8D943   A0A1L8D938   A0A0N0U4W1   A0A2M4AAP1   A0A2M4AAV8   A0A2M4BCP9   A0A1L8D9B0   A0A1L8D9I9   A0A3L8DS09   A0A2M4ABB0   A0A154NWQ5   A0A2J7PZI0   A0A182J9X6   A0A158P3X2   A0A1I8PCW9   A0A310S4S8   A0A182UXN8   A0A1I8PCM2   A0A1I8PCX5   A0A1I8PCT7   A0A088AG65   A0A182NML4   A0A182TH20   B4K7I9   A0A2C9GS09   A0A2M3Z3W4   A0A2M3Z3V8   Q5TT42   A0A182KXR6   A0A182P420   A0A1Y1KW78   A0A2C9H8I3   A0A182K4A1   A0A182VWY5   W8B4F5   W5JK68   B4N8D1   A0A182RFK9   A0A182M6M6   A0A1I8MY05   A0A0K8UGD2   T1PCK1   B4M0U9   A0A0Q9X016   A0A182FPR1   W8BRX2   A0A0A1WRR8   A0A0L0CKJ4   A0A084VTM6   A0A1W4WSM5   A0A336LFU6   D6WIT7   A0A0K8VNH1   E0VQF1   A0A0K8UWL7   B4JI35   I5APS5   A0A0B4LGV1   B4R0B0   A0A1W4VLW5   A0A1A9Z6J0   B4PRD5   A0A0P9AQU3   B4I4Y5   A0A3B0KJW6   A0A1B0FNC1   A0A1A9YI31   Q9VHY6  

KEGG

101742821    no KO assigned | (RefSeq) ER membrane protein complex subunit 1

GO

GO:0072546   GO:0016021   GO:0003899   GO:0003677   GO:0032549   GO:0006351   GO:0034975   GO:0012505   GO:0005515  

PANTHER

PTHR21573   PTHR20856  

Length:

613

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.86748

Exp number, first 60 AAs:

0.00117

Total prob of N-in:

0.00919

outside

1  -  613

 

 

Pi

22.407528

Theta

22.928042

Tajima's D

0.005024

CLR

0.739528

CSRT

0.377431128443578

Interpretation

Uncertain