Gene

KWMTBOMO03630  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006261

Annotation

PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr6(-):13854939-13886817      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.003

CDS

ATGGCGGAGGGCAATGGAGAAATATCCTATGATGAGGTAGCTGGGAAGGATTCTGATGTTGGCCGGACAGAAGATTACCACAAACTTATTGAGTATGGCTTGGATCCTAAGGTAGCCGCCAAGCTCGACGACATTTATAAGACTGGAAAGCTAGCGCACGCAGAGTTGGACGAGCGTGCTCTAGATGCCTTAAAAGAATTTCCATCCGACGGTGCTTTAAGTGTTCTTGGACAATTTTTAGATTCAAATCTCGAACATGTATCCAATAAAAGTGCTTTTTTGTGTGGAGTTATGAAGACCTATAGACAGAAAAGTCGGGCGGGCGTTCCCGGTGCTCCCGCTCTGACTCCGACTGTGCAGGTCAAGGGCCCCGACGAGGAGAAGATAAAGCAAATCTTGGCCCGAACCGGTTACACGTTAGATGTGACTACAGGTCAACGCAAGTATGGGGGTCCGCCGCCCGGGTGGGAGGGGGGCACGCCGGGCGCCGGCTGCGAGGTGTTCTGCGGCAAGATCCCCAAGGACATGTACGAGGACGAACTCATACCGCTGTTCGAACGCTGCGGCACTATCTGGGACCTGCGACTCATGATGGACCCCATGACGGGTGCCAACCGCGGCTACGCCTTCGTCACCTTCACCACCAGGGACGCCACGCAGCGGGCCGTGCACGAGCTCGATAATCACGAAATAAAACCAGGGAAGACTCTGAGAATTAAGATTAGCGTACCGAATCTGCGACTTTTCGTCGGCAACATTCCCAAGTCTAAAGGCAAAGAGGAGATACTGGAAGAGTTTGGTAAATTAACAGCTGGCCTCGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAAAATAGAGGATTTTGTTTTTTGGAATACGAGTCTCACAAAGCGGCTTCGCTGGCCAAGCGCAGACTCGGCACCGGGAGGATAAAGCAGGTTTGGGGCTGTGATATTATAGTCGACTGGGCTGACCCTCAAGAAGAACCCGACGAGCAGACCATGAGCAAAGTGAAGGTGCTGTACGTGCGGAACCTGACTCAGGACATTACGGAGGAGGCGCTAAAAGAAGAGTTCGAGCACTACGGGAACGTGGAGCGAGTTAAGAAGATCAAGGACTATGCCTTCGTGCACTTCGACGACAGGGACTGCGCGGTGAAGGCGATGCAAGAATTGGACGGGAAAGACCTGGGAGGATCCCGCTTGGAGGTGTCACTGGCGAAACCACCTTCGGACAAGAAGAAGAAGGAGGAGATCCTACGTGCTCGCGAACGTCGTATGATGCAGATGATACACGGACGCTCTGGGTTCGACTGGTGCGGGTGCTCGCCGCCGCACGCCATGCGGGGCCGCACGCCGCAGCAGGCGCCGCGCCCGCAGCACGCCCGCCCCGACTACGATTATGATTACGACTATTACGGATACGGTGATTACCGAGGTGGCTACAATGAGCCGTTTTACCGGTACGATGAGTTCTATTTTGATTACGCGGGGCCGCCGCAACCGTCCGCCGTCCGCCAGCCTCCCAACAGACCGCAGCCGGACGACGAGCTCGGCCTAGGAGCCAACTCACTTTACTACGACCTAACCGGAGGCACTCAGGCTGGGTCATGTGGGACGGGCGGTCGGTGGGCGCGACGCGGGGGCGCGGCTGGGGCCCGTGGTGGTGCTCGCCGCGCCGCACGTGGCCGGCGCACGCCCAGCGCCACCCCTGGCAACCCGCGCGCCAACCCAAGTTTACCAGGTAAACGCAAGCACGACGGGGGTCACGAGAACCAAGGGGGAGAGTCGAAGCGGCGGCTGGGCGCGACGGCGTGCGGGTGGGGGTCGCCGGCGGCCGCGAGCTAG

Protein

MAEGNGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQILARTGYTLDVTTGQRKYGGPPPGWEGGTPGAGCEVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRGYAFVTFTTRDATQRAVHELDNHEIKPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKQVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDITEEALKEEFEHYGNVERVKKIKDYAFVHFDDRDCAVKAMQELDGKDLGGSRLEVSLAKPPSDKKKKEEILRARERRMMQMIHGRSGFDWCGCSPPHAMRGRTPQQAPRPQHARPDYDYDYDYYGYGDYRGGYNEPFYRYDEFYFDYAGPPQPSAVRQPPNRPQPDDELGLGANSLYYDLTGGTQAGSCGTGGRWARRGGAAGARGGARRAARGRRTPSATPGNPRANPSLPGKRKHDGGHENQGGESKRRLGATACGWGSPAAAS

Uniprot

A0A2H1W3F7   A0A2A4KAE7   A0A2A4K968   A0A2A4KA17   A0A1E1WQK2   A0A2A4KAD7   + More
A0A2W1C427   A0A2A4KAJ0   S4PDS9   V5GUM0   A0A139WM51   D6WCB9   A0A0R3NFG2   A0A0T6AU95   A0A0R3NL37   A0A0R3NFD5   A0A0R3NFC1   A0A0R3NFL9   B5DVT1   A0A3B0KHC3   A0A3B0KBN7   A0A3B0JLE2   A0A0R3NFH4   A0A0R3NFE0   A0A0R3NJL4   A0A0R3NLV0   A0A3B0KAH2   A0A0R3NFT1   A0A0R3NKP9   A0A0R3NFT3   B4K8W1   A0A3B0JLH5   A0A0Q9WGG4   A0A0Q9XB25   A0A0Q9X465   A0A0Q9X2C0   A0A0R3NKR9   B4NFT2   A0A1Y1M3F3   A0A0Q9WTG0   W8AXU2   A0A0Q9X2Z0   A0A3B0JRR7   A0A0Q9WRR1   A0A0Q9WHP1   A0A0Q9XEQ2   A0A0R3NFQ6   I5AN86   A0A0N8P1J2   A0A1Y1M051   A0A0Q9X2D6   A0A0M5J009   A0A1A9Z8B8   A0A0Q9X292   A0A0Q9X2E6   A0A1W4V9R6   A0A0Q9WTF9   A0A0Q9WGU6   A0A0Q9X9H5   A0A0Q9X2T6   A0A0N8P1J1   A0A0P9C9R7   A0A0Q9WSB3   W8ACM2   A0A1I8M5M3   A0A0Q9X2E2   A0A0K8UAM7   A0A0Q9WRV1   A0A0P8XZU8   A0A0Q9WNF7   A0A0Q9WFN7   A0A0Q9WFX7   A0A0Q9WQ01   B4LWK2   A0A0Q9XCG2   A0A1Y1M5P3   A0A0P8XYX2   B3LZU9   A0A0P9ARH2   A0A1I8NSZ7   A0A0P8ZZQ5   A0A1I8NSZ1   A0A0P8XZT5   A0A2J7Q045   A0A1I8NSY6   A0A2J7Q054   A0A2J7Q037   A0A2J7Q053   A0A1I8NSZ2   A0A1I8NSZ5   A0A1I8NSY4   A0A2J7Q057   A0A0Q9WUN6   A0A2J7Q048   E2AQJ4   A0A067RNL6   A0A0Q9WUJ6   N6T406   A0A2P8ZIP4  

Pubmed

28756777    23622113    18362917    19820115    15632085    17994087    + More
23185243    28004739    24495485    25315136    18057021    20798317    24845553    23537049    29403074   

EMBL

ODYU01006057    SOQ47578.1    NWSH01000017    PCG80763.1    PCG80747.1    PCG80754.1    + More
GDQN01004296    GDQN01003527    GDQN01002849    GDQN01001857    GDQN01001254    JAT86758.1    JAT87527.1    JAT88205.1    JAT89197.1    JAT89800.1    PCG80753.1    KZ149893    PZC78923.1    PCG80750.1    GAIX01003526    JAA89034.1    GALX01003100    GALX01003099    JAB65367.1    KQ971316    KYB29012.1    EEZ97818.2    CM000070    KRS99859.1    LJIG01022807    KRT78614.1    KRS99858.1    KRS99864.1    KRS99863.1    KRS99855.1    KRS99856.1    EDY67698.2    OUUW01000007    SPP83088.1    SPP83086.1    SPP83087.1    KRS99862.1    KRS99857.1    KRS99854.1    KRS99861.1    SPP83089.1    KRS99865.1    KRS99860.1    KRS99866.1    CH933806    EDW16558.1    SPP83085.1    CH940650    KRF83402.1    KRG02196.1    KRG02201.1    KRG02207.1    KRS99852.1    CH964251    EDW83149.1    GEZM01043227    JAV79210.1    KRF83397.1    GAMC01020899    JAB85656.1    KRG02197.1    SPP83082.1    KRF83396.1    KRF83398.1    KRG02200.1    KRS99850.1    EIM52421.2    CH902617    KPU80076.1    GEZM01043225    JAV79212.1    KRG02208.1    CP012526    ALC46706.1    KRG02198.1    KRG02203.1    KRF83392.1    KRF83394.1    KRG02202.1    KRG02205.1    KPU80068.1    KPU80071.1    KRF83403.1    GAMC01020900    JAB85655.1    KRG02204.1    GDHF01028625    JAI23689.1    KRF83390.1    KPU80074.1    KRF83399.1    KRF83404.1    KRF83389.1    KRF83393.1    EDW67667.2    KRF83400.1    KRG02206.1    KRG02209.1    GEZM01043221    JAV79216.1    KPU80069.1    EDV43093.2    KPU80066.1    KPU80072.1    KPU80067.1    NEVH01020327    PNF21955.1    PNF21959.1    PNF21957.1    PNF21960.1    PNF21958.1    KRF99740.1    PNF21956.1    GL441773    EFN64303.1    KK852517    KDR22175.1    KRF99739.1    APGK01053365    KB741223    ENN72368.1    PYGN01000045    PSN56365.1   

Proteomes

UP000218220    UP000007266    UP000001819    UP000268350    UP000009192    UP000008792    + More
UP000007798    UP000007801    UP000092553    UP000092445    UP000192221    UP000095301    UP000095300    UP000235965    UP000000311    UP000027135    UP000019118    UP000245037   

Pfam

PF00076   RRM_1        + More
PF18360   hnRNP_Q_AcD

Interpro

IPR041337   hnRNP_Q_AcD        + More
IPR035979   RBD_domain_sf       
IPR006535   HnRNP_R/Q_splicing_fac       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

A0A2H1W3F7   A0A2A4KAE7   A0A2A4K968   A0A2A4KA17   A0A1E1WQK2   A0A2A4KAD7   + More
A0A2W1C427   A0A2A4KAJ0   S4PDS9   V5GUM0   A0A139WM51   D6WCB9   A0A0R3NFG2   A0A0T6AU95   A0A0R3NL37   A0A0R3NFD5   A0A0R3NFC1   A0A0R3NFL9   B5DVT1   A0A3B0KHC3   A0A3B0KBN7   A0A3B0JLE2   A0A0R3NFH4   A0A0R3NFE0   A0A0R3NJL4   A0A0R3NLV0   A0A3B0KAH2   A0A0R3NFT1   A0A0R3NKP9   A0A0R3NFT3   B4K8W1   A0A3B0JLH5   A0A0Q9WGG4   A0A0Q9XB25   A0A0Q9X465   A0A0Q9X2C0   A0A0R3NKR9   B4NFT2   A0A1Y1M3F3   A0A0Q9WTG0   W8AXU2   A0A0Q9X2Z0   A0A3B0JRR7   A0A0Q9WRR1   A0A0Q9WHP1   A0A0Q9XEQ2   A0A0R3NFQ6   I5AN86   A0A0N8P1J2   A0A1Y1M051   A0A0Q9X2D6   A0A0M5J009   A0A1A9Z8B8   A0A0Q9X292   A0A0Q9X2E6   A0A1W4V9R6   A0A0Q9WTF9   A0A0Q9WGU6   A0A0Q9X9H5   A0A0Q9X2T6   A0A0N8P1J1   A0A0P9C9R7   A0A0Q9WSB3   W8ACM2   A0A1I8M5M3   A0A0Q9X2E2   A0A0K8UAM7   A0A0Q9WRV1   A0A0P8XZU8   A0A0Q9WNF7   A0A0Q9WFN7   A0A0Q9WFX7   A0A0Q9WQ01   B4LWK2   A0A0Q9XCG2   A0A1Y1M5P3   A0A0P8XYX2   B3LZU9   A0A0P9ARH2   A0A1I8NSZ7   A0A0P8ZZQ5   A0A1I8NSZ1   A0A0P8XZT5   A0A2J7Q045   A0A1I8NSY6   A0A2J7Q054   A0A2J7Q037   A0A2J7Q053   A0A1I8NSZ2   A0A1I8NSZ5   A0A1I8NSY4   A0A2J7Q057   A0A0Q9WUN6   A0A2J7Q048   E2AQJ4   A0A067RNL6   A0A0Q9WUJ6   N6T406   A0A2P8ZIP4  

PDB

6ES4     E-value=1.67609e-92,     Score=868

KEGG

101735454    no KO assigned | (RefSeq) heterogeneous nuclear ribonucleoprotein Q-like

GO

GO:0003723   GO:1990904   GO:0008143   GO:0006406   GO:0005634   GO:0005737   GO:0003676   GO:0000166   GO:0051082   GO:0004674   GO:0005515   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

Length:

618

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00017

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00032

outside

1  -  618

 

 

Pi

30.475243

Theta

23.299105

Tajima's D

-1.892561

CLR

1.641905

CSRT

0.0204989750512474

Interpretation

Uncertain