Gene

KWMTBOMO03629

Pre Gene Modal

BGIBMGA006332

Annotation

PREDICTED:_cubilin_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):13815728-13852827      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.223 PlasmaMembrane   Reliability : 1.153

CDS

ATGGGAGCGGTCGCTGGGGAGGCGGAGCTCTCGAGTCAGTCCACGCTGGCTGACGCCTCGCCCACTAAACTTCCAAAGTGCGACCGTACGTTCGTGAGTCGAGGCGGGGCGAGCAACGGGACCTTCCACGCCCCCGAGCTGCTGAACTCGAACAACCAGAGCCGGCAGTGCCTCTACACGTTCCTGGCGGCGCCGGGGCAGCGCGTGCTCGTCGAGTTCAGGAAGTTCGAGCTCAGAGGCAAGCCTCCAGATGGAGCGGCAGTTGGCGAGTTACCAGCATGCATGCACGAGTACATGGACATATACTCGGAGATGGCGTCTCTGGAGACGGGCGAGCTGGTGAACTCGGCGTTCGGGGGACGATACTGCGGGCCCATACCGCCTCGACAGCGCGTCTCCCTGCACCGCGCGGTCGCACTCTCCTTCTATACAGACAAAATGTACACGCCGCCCAATCTCTTCACTGGAACTTATCGCTTTATCAACGCATCGGAATTCGAAGTGGGAACCCCCGTTCCCAATACATTGTGCTCGTTCATAATCGAGGCGAGCAAGCGGAAGACGGGGCTCCTCCTGTCGCCGACGTACCCAGGAATATATCCCAAAGACGTCACGTGCAACTACCTGTTCAGCGGACAGCCGGGACAGCGCATACGCCTCGAGTTCAGAGACTTCGATCTGTTCTTCGGCGGTCCTCATTGCCCTTTCGACTGGGTACGCGTATACGACGGGCCCGACAACTCGTCGGCGGCCATCGGCACGTACTGCGGGCAGCAGCGCAACCTCGTGCTGTACTCCAGCGACGAACGGCTGCTGGTCACGTTCTACACGCTGCCGCGCGCCGCCTCAACGCAGAACCGCGGCTTTAAGGGAATATTCGAGTTTTCCGAAAGTTTTGTTAAGTTAGATTTTATAAGTAAACACGACGCGGAGCACATTAGAGGCTCTGAATGCGATCAAAAGATCCTCAGTAAAAAGGAATCGACTGGTTTCGTCTACCATCCAAATTATCCATTCCCCTACATACAAAAAGTTGTTTGTAGATATTTTATATACGGTATGCAAGATTCACAGAATTTGGAGCGGGTGCGTTTAGAATTTCAGAATTTTTCGATACCAAAGGGAGAGAATCCCAAGCCGGACAGCACGTGTAACGATGGGTACCTGAAAGTGTACCTCCGCGGCCAGGAGGCGACGGACTCTTACGACAAGCACGACGCCGAGCTGTGCGGTGAGCGCGCCGCAGACTTCCCGCCCGCGCTCGTGTCGGACGGGCCGCGCCTCGTCATGGTGTTCTCCTCCGGGGAGCTGCAGGGCCGAGGGTTCAAGGCCAAGTACACCTTCGAGACTGAATATCGAGTTCCTGGCACGGCGGCTCCTGGCGGAGAGTGCGCCTTCACGTACCGCTCCGAGTCGAAGAAGCGCGGGGAGTTCAATTCGCCGCGCTACCCCTCAAACTACCCCTCGCACACGAACTGCACGTACATGCTGGACGCGACGCCCAACGAGCAGGTCACCGTCGTGTTCGACCACTTCAAGGTCAGGGCGGACGCCTGGAACGCCACCGCCGGCTTGTATGGTGGCGCGACCTGCAGCGAGGACTGGGTGGAGGCGTGGTGGGTGGGGCGCGAGGGGTCGCGCGTGCCCCTGGGCCGCTGGTGCGGGGCCGCCGCGCCTGGACCCCTGCACTCGCCGCGGGGGGCGCTCGGACTCATGATCGCGCTGCGGACTGACGCTGAACACGTTGCCTCGGGGTTCAAGGCTAGATACGTCTTTGAGCCGGCCAAGTCTATATTCGGCGACTGCGGGGGCAACATGTCTGGTGCGGAGTGGGGCGTGGTGACGTCACCGCGCTACCCGCTGCCCTACGAGCCGCCGGCGCGCGCTGCCGCCTCCCGGGTCTGCAACTGGTTCGTCACCGCTCGTCCCGGGAAGAGACTCTTGCTCAACTTTCAGTTCTTTGCTGTTGAAGGACATCTCATCGACCGCGGCTGCCCGGCGGCCGTGCTGCGCCTGTGGTACGAGAGCCCGGGCCCCCCGCTCGAGCTGTGCGGGGAGAAGGCGCCCGCCGACCGCTGGCAATACCTCTCCTCCTCCAACTCTATAAGACTTTCGTTCATAATAGCGGACAAGTCCGTGGGCGGCAGCGGCTGGCGCGCCGTGTGGACGGAGGTGTCGGCGGCGGAGGGCGCGGCATGTCCGGGCGGCGCGCTGCCGTGCGGAGCCGCATGTCTGCCGCGCGCCGCGCTGTGCTCCGGCCTACAGCACTGCGCGCACCCGCTGCAACACCACCAGCACTGCGAGAAGGGAGTGTCTGGTGGCAGCTCGTCGTCGTGGACGTGGTGGTGGGTGGCGTGCGGTGGTAGTGCCGCGGGTGCCGCAGTGCTGGGCGCGTGGTGCCGGCGGCGTGGGAGACGGACCCCCCGCCGGCCGCCGCCCCCTCCTCGCCCGCCGCCGCGACCCCGCCCTCCCGCTCTACCTGACACCGTATGA

Protein

MGAVAGEAELSSQSTLADASPTKLPKCDRTFVSRGGASNGTFHAPELLNSNNQSRQCLYTFLAAPGQRVLVEFRKFELRGKPPDGAAVGELPACMHEYMDIYSEMASLETGELVNSAFGGRYCGPIPPRQRVSLHRAVALSFYTDKMYTPPNLFTGTYRFINASEFEVGTPVPNTLCSFIIEASKRKTGLLLSPTYPGIYPKDVTCNYLFSGQPGQRIRLEFRDFDLFFGGPHCPFDWVRVYDGPDNSSAAIGTYCGQQRNLVLYSSDERLLVTFYTLPRAASTQNRGFKGIFEFSESFVKLDFISKHDAEHIRGSECDQKILSKKESTGFVYHPNYPFPYIQKVVCRYFIYGMQDSQNLERVRLEFQNFSIPKGENPKPDSTCNDGYLKVYLRGQEATDSYDKHDAELCGERAADFPPALVSDGPRLVMVFSSGELQGRGFKAKYTFETEYRVPGTAAPGGECAFTYRSESKKRGEFNSPRYPSNYPSHTNCTYMLDATPNEQVTVVFDHFKVRADAWNATAGLYGGATCSEDWVEAWWVGREGSRVPLGRWCGAAAPGPLHSPRGALGLMIALRTDAEHVASGFKARYVFEPAKSIFGDCGGNMSGAEWGVVTSPRYPLPYEPPARAAASRVCNWFVTARPGKRLLLNFQFFAVEGHLIDRGCPAAVLRLWYESPGPPLELCGEKAPADRWQYLSSSNSIRLSFIIADKSVGGSGWRAVWTEVSAAEGAACPGGALPCGAACLPRAALCSGLQHCAHPLQHHQHCEKGVSGGSSSSWTWWWVACGGSAAGAAVLGAWCRRRGRRTPRRPPPPPRPPPRPRPPALPDTV

Uniprot

A0A2W1BZA2   A0A2A4KA26   A0A2H1W3P3   H9J9Y7   A0A194R672   A0A194QFS7   + More
A0A212F187   A0A139WME2   A0A182N5F2   A0A182QXP3   A0A182Y576   A0A182P2F1   A0A182RPM2   A0A182HKT6   A0A084W586   A0A182FP22   A0A1Y1LS73   A0A1B6DLN2   A0A1A9XIA6   A0A034V5E0   A0A1B6EEM9   B4K8N5   A0A034V847   A0A1A9W7Z4   A0A0Q9X0B2   A0A067REA5   A0A0A1XL73   A0A0A1WHQ8   A0A182VRA6   B3MSS2   T1HTY9   D6WCB5   A0A195FSF5   A0A0Q9X0D8   A0A0Q9X758   A0A0N8NYY1   A0A0B4K760   A0A0P8XE54   Q7PUS8   W8BBK7   A0A182JJJ1   A0A1W4UMV9   A0A0R1E558   A0A0R1E0I7   A0A1W4UAQ4   B4LYJ1   A0A1W4UMP7   A0A0Q9WGW4   A0A0R1E0H9   A0A0P9A2T0   A0A151WI68   A0A0Q9WTY4   A0A0P8XDM4   B4PMP8   A0A023F494   A0A0R3NH41   Q9VE20   A0A151HZ47   A0A0B4K6C8   A0A0R3NH16   I5ANZ8   I5ANZ9   A0A0R1E0I2   Q298E4   A0A1W4UBB7   A0A1W4UPJ4   B4NG09   A0A0R3NH97   A0A1J1J1J3   A0A026VXA4   A0A158NSG8   A0A1A9Z8A9   A0A182X9V4   A0A0R3NNN5   A0A2A3EE59   I5ANZ7   A0A0L7RDY9   A0A088AN59   A0A1A9V3E5   A0A154PCQ4   E2AQJ3   B3P391   F4WFM5   A0A182L944   A0A0M8ZXP4   B4JTM3   A0A3Q0IWS6   K7J027   A0A182V142   A0A310SBI4   A0A182M697   A0A182KDW8   A0A2H8TGQ4   J9K6W7   A0A2S2QJU5   A0A1I8P1E4   A0A151J4L5   A0A1I8N7E1   A0A034V7J2   A0A034V6I2  

Pubmed

28756777    19121390    26354079    22118469    18362917    19820115    + More
25244985    24438588    28004739    25348373    17994087    24845553    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12364791    14747013    17210077    24495485    17550304    18057021    25474469    15632085    23185243    24508170    30249741    21347285    20798317    21719571    20966253    20075255    25315136   

EMBL

KZ149893    PZC78924.1    NWSH01000017    PCG80764.1    ODYU01006057    SOQ47576.1    + More
BABH01026076    BABH01026077    BABH01026078    KQ460647    KPJ13167.1    KQ459011    KPJ04342.1    AGBW02010943    OWR47484.1    KQ971316    KYB29011.1    AXCN02001174    APCN01000867    ATLV01020524    ATLV01020525    KE525302    KFB45380.1    GEZM01051713    GEZM01051712    JAV74735.1    GEDC01010705    JAS26593.1    GAKP01021253    JAC37699.1    GEDC01000910    JAS36388.1    CH933806    EDW15454.2    GAKP01021254    JAC37698.1    KRG01564.1    KK852517    KDR22176.1    GBXI01002595    JAD11697.1    GBXI01016091    JAC98200.1    CH902623    EDV30312.2    ACPB03009755    EEZ97820.2    KQ981276    KYN43520.1    KRG01563.1    KRG01562.1    KPU72788.1    AE014297    AFH06503.1    KPU72791.1    AAAB01008987    EAA01077.6    GAMC01019316    JAB87239.1    CM000160    KRK02810.1    KRK02811.1    CH940650    EDW68011.2    KRF83604.1    KRF83603.1    KRK02813.1    KPU72789.1    KQ983089    KYQ47559.1    KRF83605.1    KPU72787.1    EDW95968.2    GBBI01002755    JAC15957.1    CM000070    KRT00375.1    AAF55612.4    KQ976719    KYM76762.1    AFH06505.1    KRT00376.1    EIM52683.1    EIM52684.2    KRK02812.1    EAL28011.4    KRT00377.1    CH964251    EDW83226.2    KRT00378.1    CVRI01000065    CRL05810.1    KK107652    QOIP01000003    EZA48290.1    RLU25177.1    ADTU01024899    ADTU01024900    ADTU01024901    ADTU01024902    ADTU01024903    ADTU01024904    ADTU01024905    ADTU01024906    KRT00374.1    KZ288269    PBC30017.1    EIM52682.1    KQ414613    KOC68946.1    KQ434864    KZC09048.1    GL441773    EFN64302.1    CH954181    EDV48543.1    GL888120    EGI67002.1    KQ435824    KOX72196.1    CH916374    EDV91452.1    KQ761768    OAD57107.1    AXCM01011601    AXCM01011602    GFXV01001470    MBW13275.1    ABLF02036820    GGMS01008597    MBY77800.1    KQ980159    KYN17419.1    GAKP01021252    JAC37700.1    GAKP01021250    JAC37702.1   

Proteomes

UP000218220    UP000005204    UP000053240    UP000053268    UP000007151    UP000007266    + More
UP000075884    UP000075886    UP000076408    UP000075885    UP000075900    UP000075840    UP000030765    UP000069272    UP000092443    UP000009192    UP000091820    UP000027135    UP000075920    UP000007801    UP000015103    UP000078541    UP000000803    UP000007062    UP000075880    UP000192221    UP000002282    UP000008792    UP000075809    UP000001819    UP000078540    UP000007798    UP000183832    UP000053097    UP000279307    UP000005205    UP000092445    UP000076407    UP000242457    UP000053825    UP000005203    UP000078200    UP000076502    UP000000311    UP000008711    UP000007755    UP000075882    UP000053105    UP000001070    UP000079169    UP000002358    UP000075903    UP000075883    UP000075881    UP000007819    UP000095300    UP000078492    UP000095301   

PRIDE

H9J9Y7    Q9VE20   

Pfam

PF00431   CUB        + More
PF00057   Ldl_recept_a

Interpro

IPR035914   Sperma_CUB_dom_sf        + More
IPR000859   CUB_dom       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       

SUPFAM

SSF49854   SSF49854        + More
SSF57424   SSF57424       

Gene 3D

2.60.120.290     4.10.400.10    

CDD

cd00041  CUB
cd00112  LDLa

ProteinModelPortal

A0A2W1BZA2   A0A2A4KA26   A0A2H1W3P3   H9J9Y7   A0A194R672   A0A194QFS7   + More
A0A212F187   A0A139WME2   A0A182N5F2   A0A182QXP3   A0A182Y576   A0A182P2F1   A0A182RPM2   A0A182HKT6   A0A084W586   A0A182FP22   A0A1Y1LS73   A0A1B6DLN2   A0A1A9XIA6   A0A034V5E0   A0A1B6EEM9   B4K8N5   A0A034V847   A0A1A9W7Z4   A0A0Q9X0B2   A0A067REA5   A0A0A1XL73   A0A0A1WHQ8   A0A182VRA6   B3MSS2   T1HTY9   D6WCB5   A0A195FSF5   A0A0Q9X0D8   A0A0Q9X758   A0A0N8NYY1   A0A0B4K760   A0A0P8XE54   Q7PUS8   W8BBK7   A0A182JJJ1   A0A1W4UMV9   A0A0R1E558   A0A0R1E0I7   A0A1W4UAQ4   B4LYJ1   A0A1W4UMP7   A0A0Q9WGW4   A0A0R1E0H9   A0A0P9A2T0   A0A151WI68   A0A0Q9WTY4   A0A0P8XDM4   B4PMP8   A0A023F494   A0A0R3NH41   Q9VE20   A0A151HZ47   A0A0B4K6C8   A0A0R3NH16   I5ANZ8   I5ANZ9   A0A0R1E0I2   Q298E4   A0A1W4UBB7   A0A1W4UPJ4   B4NG09   A0A0R3NH97   A0A1J1J1J3   A0A026VXA4   A0A158NSG8   A0A1A9Z8A9   A0A182X9V4   A0A0R3NNN5   A0A2A3EE59   I5ANZ7   A0A0L7RDY9   A0A088AN59   A0A1A9V3E5   A0A154PCQ4   E2AQJ3   B3P391   F4WFM5   A0A182L944   A0A0M8ZXP4   B4JTM3   A0A3Q0IWS6   K7J027   A0A182V142   A0A310SBI4   A0A182M697   A0A182KDW8   A0A2H8TGQ4   J9K6W7   A0A2S2QJU5   A0A1I8P1E4   A0A151J4L5   A0A1I8N7E1   A0A034V7J2   A0A034V6I2  

PDB

6GJE     E-value=1.12339e-31,     Score=344

KEGG

101742530    no KO assigned | (RefSeq) cubilin

GO

GO:0016021  

Length:

830

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.504

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.00003

outside

1  -  777

TMhelix

778  -  800

inside

801  -  830

 

 

Pi

15.99593

Theta

23.645985

Tajima's D

-1.726662

CLR

165.322665

CSRT

0.0339983000849957

Interpretation

Uncertain