Gene

KWMTBOMO03628

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):13788723-13789197      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.757 Nuclear   Reliability : 2.141

CDS

ATGAAGAAGGCTGACAGAGACCGAATAGACGCTTTTGAAATGTGGTGCTGGAGAAAAATGCTACAGATTCCATGGACCGCCTTTCGCACCAACGTGTCTATTCTGAGAGAGCTTCATGTCAAAACCAGACTTTCCACTATATGCCTTCGTAGGGTGCTGGAATTCTTCGGACATATTACTCGTAAAGAGGGTCACAATCTTGAACAGCTGATGGTGACAGGAAAGGTAGATGGCAAACGTCCCAGAGGACGCAGTCCCACGAGATGGTCGGACCAAATACGATCTTCTCTGGACATCAACTTCCACAATGCCCTTCATGAAGCTAAGGATCGCAGCAAATGGAGGGAAATCGTACAGGAGAAACTGATGCAGCGGGGGAGTCACGACCCTCAGTAA

Protein

MKKADRDRIDAFEMWCWRKMLQIPWTAFRTNVSILRELHVKTRLSTICLRRVLEFFGHITRKEGHNLEQLMVTGKVDGKRPRGRSPTRWSDQIRSSLDINFHNALHEAKDRSKWREIVQEKLMQRGSHDPQ

Uniprot

D7F163   A0A2H1VU13   A0A2H1V742   A0A2H1VNK5   A0A2W1B3R1   D7F172   + More
D7F174   D7F161   D7F162   D5LB39   D7F168   D7F175   D7F167   A0A2H1W7G4   A0A194PHS9   A0A2W1BGD9   A0A2G8LJK7   A0A2G8K327   A0A2G8KTJ4   A0A2G8JE23   A0A2G8JVA1   A0A2G8K796   A0A2G8L6P4   A0A2G8JVI4   A0A2G8K183   H2YWZ6   A0A151IIH7   W5NMM5   H2YWZ5   W4YPU3   X1D4L4   O97916   A0A2H1V1U0   W4Y921   A0A085LZ21   A0A2A4J795   A0A085NA37   W5NLK6   W5NIE2   W5MM77   A0A2D4ILX4   A0A0A9VZT6   A0A0L8GBP3   A0A061BKJ9   A0A2H6KKM9   A0A146L0Z1   A0A2W1BSS7   A0A0B7BT11   H3B2Y3   X1WK45   J9LZK0   A0A0B7BVF2   D5LB38   A0A2S2P9Y7   W5N9W4   A0A067RQM5   A0A0B7BSZ9   A0A0B7BUS3   A0A0B7BUR9   A0A0B7BT80   W5NMX6   W5MW18   A0A067QUH9   A0A085N9X5   A0A2S2QAF2   A0A0B7BVF8   A0A2S2NMQ2   A0A067R8J7   A0A067QJX4   A0A076N3Z4   A0A067QXS5   A0A067QZY5   A0A0B7BSC2   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   W5MYT3  

Pubmed

20470440    28756777    26354079    29023486    24624126    10555285    + More
24929829    25401762    29078748    26823975    9215903    24845553   

EMBL

FJ265548    ADI61816.1    ODYU01004401    SOQ44236.1    ODYU01001007    SOQ36619.1    + More
ODYU01003523    SOQ42419.1    KZ150366    PZC71172.1    FJ265557    ADI61825.1    FJ265559    ADI61827.1    FJ265546    ADI61814.1    FJ265547    ADI61815.1    GU815090    ADF18553.1    FJ265553    ADI61821.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    ODYU01006805    SOQ48998.1    KQ459603    KPI92872.1    KZ150203    PZC72267.1    MRZV01000056    PIK60437.1    MRZV01000940    PIK42365.1    MRZV01000378    PIK51329.1    MRZV01002322    PIK33998.1    MRZV01001216    PIK39650.1    MRZV01000817    PIK43880.1    MRZV01000196    PIK55924.1    MRZV01001207    PIK39730.1    MRZV01000994    PIK41715.1    KQ977522    KYN02133.1    AHAT01022938    AAGJ04055194    BART01031562    GAH15691.1    AJ132772    CAA10770.1    ODYU01000306    SOQ34818.1    AAGJ04161766    KL363256    KL367985    KFD50217.1    KFD59415.1    NWSH01002736    PCG67606.1    KL363266    KL367526    KFD49675.1    KFD66333.1    AHAT01012943    AHAT01009145    AHAT01015286    IACK01103929    LAA85243.1    GBHO01041897    JAG01707.1    KQ422743    KOF74343.1    LK055282    CDR71995.1    BDSA01000081    GBE63537.1    GDHC01017214    JAQ01415.1    KZ149985    PZC75696.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    AFYH01119920    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    ABLF02042206    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    GU815089    ADF18552.1    GGMR01013640    MBY26259.1    AHAT01022314    KK852482    KDR22935.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049256    CEK96121.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    AHAT01025955    AHAT01013157    AHAT01013158    KK852941    KDR13536.1    KFD49622.1    KFD66271.1    GGMS01004979    MBY74182.1    HACG01049496    CEK96361.1    GGMR01005851    MBY18470.1    KK852811    KDR15914.1    KK853249    KDR09341.1    KF881086    AIJ27485.1    KK853131    KDR10935.1    KK852843    KDR15156.1    HACG01049254    CEK96119.1    HACG01049255    CEK96120.1    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    AHAT01017643   

Proteomes

UP000053268    UP000230750    UP000007875    UP000078542    UP000018468    UP000007110    + More
UP000218220    UP000053454    UP000008672    UP000007819    UP000027135   

PRIDE

D7F163    D7F172    D7F174    D7F161    D7F162    D5LB39    + More
D7F168    D7F175    D7F167    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF05699   Dimer_Tnp_hAT
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR008906   HATC_C_dom       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF46689   SSF46689       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   A0A2H1VU13   A0A2H1V742   A0A2H1VNK5   A0A2W1B3R1   D7F172   + More
D7F174   D7F161   D7F162   D5LB39   D7F168   D7F175   D7F167   A0A2H1W7G4   A0A194PHS9   A0A2W1BGD9   A0A2G8LJK7   A0A2G8K327   A0A2G8KTJ4   A0A2G8JE23   A0A2G8JVA1   A0A2G8K796   A0A2G8L6P4   A0A2G8JVI4   A0A2G8K183   H2YWZ6   A0A151IIH7   W5NMM5   H2YWZ5   W4YPU3   X1D4L4   O97916   A0A2H1V1U0   W4Y921   A0A085LZ21   A0A2A4J795   A0A085NA37   W5NLK6   W5NIE2   W5MM77   A0A2D4ILX4   A0A0A9VZT6   A0A0L8GBP3   A0A061BKJ9   A0A2H6KKM9   A0A146L0Z1   A0A2W1BSS7   A0A0B7BT11   H3B2Y3   X1WK45   J9LZK0   A0A0B7BVF2   D5LB38   A0A2S2P9Y7   W5N9W4   A0A067RQM5   A0A0B7BSZ9   A0A0B7BUS3   A0A0B7BUR9   A0A0B7BT80   W5NMX6   W5MW18   A0A067QUH9   A0A085N9X5   A0A2S2QAF2   A0A0B7BVF8   A0A2S2NMQ2   A0A067R8J7   A0A067QJX4   A0A076N3Z4   A0A067QXS5   A0A067QZY5   A0A0B7BSC2   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   W5MYT3  

KEGG

105841427    no KO assigned | (RefSeq) uncharacterized LOC105841427

GO

GO:0003964   GO:0004519   GO:0004197   GO:0046983   GO:0003677   GO:0016021  

Length:

131

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00895999999999999

Exp number, first 60 AAs:

0.00895999999999999

Total prob of N-in:

0.68137

inside

1  -  131

 

 

Pi

10.620758

Theta

13.274826

Tajima's D

-0.772449

CLR

0.256361

CSRT

0.179391030448478

Interpretation

Uncertain