Silkworm Genome Informatics Database

Gene

KWMTBOMO03620

Pre Gene Modal

BGIBMGA006267

Annotation

PREDICTED:_RING_finger_and_transmembrane_domain-containing_protein_2_[Amyelois_transitella]

Location

Bomo_Chr6(-):13693081-13698137 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.49

CDS

ATGACCCAACAAAATCAAGTTAACGTCGATATCGAGGAAGAAGAAAGCGATGAGGTGACACCAAGAACCAATGTGTTGCACAGACTGGATTCTAGACCTTCGATTCCTAATAGAAATAATATAGGGCTTGGTGATCGACTCAATAGTGTATTCAGAGAGATACGACCGCTGGTTGAAAATGCTAGAATGGGAAATAATGCCAGATTATCATTACCAACATGGCTACCAAGAAATCCACCAGGTACCCACCAGATAATAGAAGTTGGACTGCGTAGGCCTCAAAGTTCCATAGCACACGTGAATCTTGGACCAAATGCTCAGACCTTTATTGTGACTGACAGAGGAACTTCTCCAGCACAGAGATCACAATCAACAAGTCACGCATTGAGTGCAAGTGCATCAAATGATTCCAACTTGTCAGAGCAAGCACCAGAAAATGCAGAGATTAATGTGTCAGTAAATCCTGCCAATAATAATAATATTCACGATAATACAGACAATGACAGTCAGAGTGAAGATGGAAATCCACAGATTGTCGATGTACGTGGCACACTGAATCTGTTAATACGCTATGCACCATTCTACTTAATTCTATTAATGAAGTTTATGTATGAAAGTAGAGAGGGCATATTCACCTTCACAATACTATTTTGCACTTTCGTACACAGCAACTGTCTAGTAAGGCGAGAGCATGCTAAGCAAATGAACCGAAGCATCTTGGCTCTGTTTGGAGAGTTGATGTTCACATTATGTCTCATAGCCATTGTGTATCTGTTATTCGGTCACGGGAAGCTCTTACAGAATGTTATTATGTTCCCTCAGTACACAGAGCTTGGGGTGTGGGAACTAATATGGTTGGTTGTACTGACCGATCTGATAGTTAAGATCATAACTGTGGATGTGAAGATTGTTGTGACGATGATGCCAGCTTGCTTACTGCCATTCCAGAAAAGGGGTAAAGTATATCTTTTCACTGAAGCTGTCTCCCAACTGTACCGTTGCTTCCTTACGATACAACCCTGGGTGTTCTACTTGATGCAGTCATACGAAGGCTCCGAAAAGATGGTTGGAATGTTCCTTACTTCGGTCTACGTTATCGCCAAGGTGGTAGAAATACTGACAAAGCTGAGGCTCTTTAAAAATGCTACTTGGACTCTACTGCAGAGTGTGAACTTAGGCACCAAACCGACCTGCGAACAGCTACTGTCGGCCGGCGACTCCTGCCCGATATGCCACGACGACTACACGACCCCGGTGCGGCTGGGCTGCAGCCACATCTTCTGCGAGCTCTGCATATCGGCCTGGCTGGACAGAGAGCATACCTGCCCATTGTGCCGCGCCAAAGTGGCCGACGAGCCGACTTGGCGAGACGGCTCCACCACATACGACTTTCAGCTGTATTAG

Protein

MTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARMGNNARLSLPTWLPRNPPGTHQIIEVGLRRPQSSIAHVNLGPNAQTFIVTDRGTSPAQRSQSTSHALSASASNDSNLSEQAPENAEINVSVNPANNNNIHDNTDNDSQSEDGNPQIVDVRGTLNLLIRYAPFYLILLMKFMYESREGIFTFTILFCTFVHSNCLVRREHAKQMNRSILALFGELMFTLCLIAIVYLLFGHGKLLQNVIMFPQYTELGVWELIWLVVLTDLIVKIITVDVKIVVTMMPACLLPFQKRGKVYLFTEAVSQLYRCFLTIQPWVFYLMQSYEGSEKMVGMFLTSVYVIAKVVEILTKLRLFKNATWTLLQSVNLGTKPTCEQLLSAGDSCPICHDDYTTPVRLGCSHIFCELCISAWLDREHTCPLCRAKVADEPTWRDGSTTYDFQLY

Uniprot

H9J9S4 A0A2A4J4R3 A0A2W1BX84 A0A194RBA4 A0A194QHC4 A0A1E1W715 + More
A0A212ER56 A0A0L7LQW9 A0A2H1VHW5 N6U2D5 A0A067QK18 J9JX95 A0A2S2NNL8 A0A2H8TR73 A0A1B6C2A5 A0A1B6CEY2 A0A1J1HXN9

Pubmed

19121390 28756777 26354079 22118469 26227816 23537049 + More
24845553

EMBL

BABH01026059 NWSH01003141 PCG66869.1 KZ149893 PZC78931.1 KQ460647 + More
KPJ13176.1 KQ459011 KPJ04335.1 GDQN01008309 JAT82745.1 AGBW02013152 OWR43934.1 JTDY01000294 KOB77847.1 ODYU01002420 SOQ39874.1 APGK01042093 KB741002 KB631984 ENN75710.1 ERL87703.1 KK853259 KDR09239.1 ABLF02036597 GGMR01006170 MBY18789.1 GFXV01004892 MBW16697.1 GEDC01029646 JAS07652.1 GEDC01025418 JAS11880.1 CVRI01000020 CRK91286.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000037510 + More
UP000019118 UP000030742 UP000027135 UP000007819 UP000183832

PRIDE

H9J9S4

Pfam

PF13639 zf-RING_2

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR001841   Znf_RING
IPR017907   Znf_RING_CS

Gene 3D

3.30.40.10

ProteinModelPortal

H9J9S4 A0A2A4J4R3 A0A2W1BX84 A0A194RBA4 A0A194QHC4 A0A1E1W715 + More
A0A212ER56 A0A0L7LQW9 A0A2H1VHW5 N6U2D5 A0A067QK18 J9JX95 A0A2S2NNL8 A0A2H8TR73 A0A1B6C2A5 A0A1B6CEY2 A0A1J1HXN9

PDB

2ECT E-value=2.4751e-06, Score=123

KEGG

101747110 no KO assigned | (RefSeq) RING finger and transmembrane domain-containing protein 2

GO

GO:0016021 GO:0005515 GO:0008270 GO:0046872 GO:0022857 GO:0005215 GO:0051103 GO:0005524 GO:0042555 GO:0048384

Length:

467

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

97.9986800000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.66879

inside

1 - 186

TMhelix

187 - 204

outside

205 - 208

TMhelix

209 - 226

inside

227 - 238

TMhelix

239 - 261

outside

262 - 467

Pi

20.206182

Theta

20.119011

Tajima's D

-0.54457

CLR

0.65169

CSRT

0.232688365581721

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics