SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03603
Pre Gene Modal
BGIBMGA006274
Annotation
PREDICTED:_fibril-forming_collagen_alpha_chain-like_[Bombyx_mori]
Location
Bomo_Chr6(-):13342010-13354660      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.188
 

Sequence

CDS
ATGGGAAGGACGTACTCGGATGGGGATACATGGAAGCGAGACAACTGTACAATCTGTCAGTGCTTCGGAGGACAGACCAATTGCACCGTACTTCCTGCTTGTTTGTCAGCTCCAACACCGACTCGGCCTGCTGTACCACCGACCCCATCACGTGGAGTCCCAGGTCGTCAAGGAGACGAAGGTCCTCAAGGACCGCCTGGAGTTCCAGGTGTCAACGGCGTACCAGGAGCCCCCGGCATTCCTGGCCCAAGTGGTCCCATGCCCGATGTGAACGCATATTTGGCACAACTAGCAGCAACCGCTGGCGGCGATAAGGGCCCAGCGTTTGACCCGTATCAGTACATGCAAGCTTCTGTTGGAGCACCAGGAATTAGAGGAATAGCAGGACCGCAAGGCCCGCCCGGCCCGCAAGGTTTTCAAGGTCCAAGAGGAGAGCCAGGTGAGCCAGGAATGCCTGGACCACAGGGTATAGCTGGAGAAAGAGGTCCACCAGGATTGCCTGGAAAAGATGGCGCTCCTGGTGAGGATGGTGAGCCAGGTCCAGTGGGAGCCGCTGGACAGCCAGGCCCTCGAGGTTCGCCGGGAATTCCCGGTATTCAAGGGCTGAAAGGTCACAGGGGATTCGACGGGAAAGACGGTGCAAAAGGAGATCAAGGGCAACCTGGTGAAAAAGGACCTACAGGACTGCCTGGGCAAATGGGACCTACAGGACTTGTGGGACCAGTTGGCCCCCGAGGTGAACGTGGTCGTGAAGGGCCTCCAGGTCCTCCTGGAATCCGAGGTGCTGATGGTGCAACAGGATTACCTGGGCCAGTGGGTAATGTTGGTAAACCTGGTTCACCAGGCTTTCCCGGTTCCCCTGGAATAAAAGGCGAACAAGGTGTTGTTGGACCTAAAGGCAGCCAAGGTCTTCAAGGACCTAGAGGAGAATCAGGACGTCCAGGGACTACAGGCGAAGCTGGCTCTCCGGGAATCCCTGGAAATGATGGAATTCCTGGTGAAAAAGGTGTACAAGGGCAACCGGGGCCTTCGGGGCCTCAAGGTTTCCCAGGACCAAGAGGGACTCCAGGAGTAGCAGGTGATCCAGGCATGCCAGGATCTAAAGGAATGCCAGGCCAACCTGGTGAAAGAGGTACAAAAGGTGATGCTGGTATCAGGGGAGAATCGGGTGCACCTGGACCTAGAGGTCTACCAGGTTCGGTGGGAGCAGAAGGCAAACGTGGTAAACGTGGTCTAAGGGGACCTGCTGGTAATGTTGGACCTCAGGGAGAGCGGGGTTCACAAGGAATGAGAGGCCTGCCTGGTTTGGATGGTGCTGCCGGACCTAAAGGTCAACCTGGAGAACGAGGTGGCTTAGGATTACCAGGAACTAAGGGCAGTTTGGGGGACCCTGGTAGACCCGGTAGTCAAGGCTTGCAAGGCCCAAGAGGAGCTATCGGAAGACAAGGTATACCGGGAAAAACTGGGCCGCAAGGTGAAAGAGGTATACCGGGTGCTGATGGTCGTCCTGGCGAACAAGGACCACAAGGATTGCAGGGACCACCTGGTATGATGGGAAACCCAGGGGAACGTGGATTGCAAGGTGAGCCTGGTAAAGACGGTGAACAAGGACTGCAAGGACCTCAAGGACCCAAAGGTGATGCAGGACGAGACGGTAGTCCAGGTATCCAAGGACCTCAAGGACCTCAAGGATCGGCAGGTGAAAGAGGGCCTCAGGGTCAAACTGGACCTACAGGATTTCCGGGAATGCCTGGTACCGCTGGACAACCTGGTTCTCCGGGCAAAGAGGGGGAGCCCGGTATAGCTGGGCCGGCAGGTCCTCCTGGACTAATCGGACCACGTGGTGAAAGAGGATATCCTGGTGAACGTGGACAGCCCGGACAAGCTGGTACTCCAGGAGAGAAAGGAGAAACTGGTTCTCAAGGAGCAGACGGACCACCGGGTCCGGAAGGTGCTAGGGGTAGTAAAGGGCATCCAGGACCAATAGGAGCCATGGGTATGCCGGGGCCTAGAGGACCTACAGGTTTCGCTGGCGAGAAAGGCGAAAGAGGAGCAGCTGGACCGAATGGCGTTGATGGACCTCCAGGCCGTCAGGGTGATCAAGGGCCGCAGGGCCCAGTAGGGCCAGCTGGTCCTCCTGGAGAGCCGGCTGAACGCGGAGAGCCGGGTACTGCAGGAGTCCCTGGGGAGCCTGGAGCTCCGGGTTCTACTGGCGAAAGAGGGCAACCTGGCTTACAAGGATCCCCGGGACTGCCAGGATCTCCTGGACTAACTGGAATGCCTGGTCTTAAGGGTGATAGAGGATATAGCGGCCCCAAAGGACAGCAAGGATTACCTGGAAGTCCAGGTGTACCTGGAGAAATGGGCTTGAGAGGACTGCCTGGAGTGGCCGGTGCTAAAGGTGCACGGGGTGAACAAGGTCACAAGGGGGATCCAGGTCATGCCGGGTTACCTGGGAGACCAGGGGATTTGGGTCCTCCGGGACCTCAAGGCAGTACTGGACCTGCAGGAGCAGCAGGTATCCAAGGAGCTAAAGGAGCATCCGGTGAAGCCGGTCGTCCTGGTCCTCCTGGGCCTATCGGCTTGACCGGCTCTGCAGGGCCAGAAGGACCTAAGGGCGAACGAGGGAGTGAAGGAGAACAAGGGCCGCAAGGTCAAGCTGGACCACCTGGATCAGCTGGCGAGAGAGGGCCAAGTGGCTTACCGGGTATGGTTGGACCTCCAGGACCGCAAGGACTACGGGGTACACAGGGTGAAAGTGGTACACCAGGCAAACCAGGCGCAGATGGGGCACAAGGCTTACCGGGAGCTCCTGGGCTTCAAGGACCGCCAGGTCCTATGGGTGAACCAGGACCCGAAGGGAGACCAGGAAAACAAGGACAACCTGGAATATCTGGCCGTCCAGGTGACAAAGGACCTATAGGACCCCCTGGTTCTTCAGGCTCCCCTGGATTACCTGGAATGCAGGGTCCACCTGGACCTTCTGGACCAACTGGGCCAACTGGCGAGAGGGGTCCTAGAGGTGAATTAGGCCCCCCAGGTGTAGATGGGCCTCAAGGTCCTTCAGGCAAACAGGGACCACCAGGGCTTGATGGAGCTAAAGGCGAAAGAGGCGAGGCTGGTGCTGATGGAAGTAAAGGCCATGCTGGCCTTCCTGGGCTACCAGGGATGGTCGGCGCACCAGGAAGAGTCGGCGAACGTGGCTTACCTGGTCCTATGGGACCTCCTGGAAAGGATGGCGATGTTGGACCAAGAGGAACGCCAGGACGTGACGGAAGTTCGGGTCCTCAAGGACAAATGGGTCCACCGGGAGGCAGGGGTCCCGCTGGAGATCCCGGAAAACATGGGCCTCCTGGGCCATCAGGACCACCCGGACCGCCCGGACCTCCAGGAGAAGGACTGGCTTATGACGCCGCTGCTATCGCTGCTATGTTGCAGCAAGGTTCTATAAAAGGTCCGGATCCGCTCGGCGATGACCCTAACTCCCTGCCTCCAAGGTTCTTCAAGGACGACATGTCGTTGTCAGAACGTAAAGAAATCGTTATTAAGGCATACGAGCGACTCAAAGTGTCTCTTGACAAATTCTTAAAGCCAGATGGCTCGAAGGACGCACCTGCGAAGACTTGTGGCGACATCAAATACCATCATCCGAGCTTTGAAAGCGGTCAATACTGGATCGATCCTAATGGTGGGGACATGAATGATGCCATTATGGTCCACTGTGACATGTCGACTGGAGCCAGCTGCGTATATCCCAAGCCGATGCAGACCCAGGATATTTCGTACAAAGGAGAAGAGAAAGAGCCATGGCTTAGTGAGATGGAAGAAGGGTTTACGATCAACTACAAGGCGGATCACACTCAGCTGACATATCTTCAGCTCCTTTCACTGAAAGCAGTTCAGAACGTCACGCTCCACTGTCGGAACACCGTCGGCTACTTTGATCCCTCGACGAAAAATTACAAACGGGGAATCAAATTGCTCGCGTACAACGATGCCGAGATCCTTCCTAAAGCTAACAACAGGTTGAGGTATACTGCCCTGCTAGATGAATGCCAGTACAAGAAAAGTTCATGGGCGAAAACCATCGTGGAATATTCTACTGACAAGCCTGGCCGTCTTCCACTCTTGGACGTCGCCATCCGAGACGTCGGCAAACCAAACCAGACCTTCCGAGTAGAGTTGGGACTTGCATGCTTTATGTAA
Protein
MGRTYSDGDTWKRDNCTICQCFGGQTNCTVLPACLSAPTPTRPAVPPTPSRGVPGRQGDEGPQGPPGVPGVNGVPGAPGIPGPSGPMPDVNAYLAQLAATAGGDKGPAFDPYQYMQASVGAPGIRGIAGPQGPPGPQGFQGPRGEPGEPGMPGPQGIAGERGPPGLPGKDGAPGEDGEPGPVGAAGQPGPRGSPGIPGIQGLKGHRGFDGKDGAKGDQGQPGEKGPTGLPGQMGPTGLVGPVGPRGERGREGPPGPPGIRGADGATGLPGPVGNVGKPGSPGFPGSPGIKGEQGVVGPKGSQGLQGPRGESGRPGTTGEAGSPGIPGNDGIPGEKGVQGQPGPSGPQGFPGPRGTPGVAGDPGMPGSKGMPGQPGERGTKGDAGIRGESGAPGPRGLPGSVGAEGKRGKRGLRGPAGNVGPQGERGSQGMRGLPGLDGAAGPKGQPGERGGLGLPGTKGSLGDPGRPGSQGLQGPRGAIGRQGIPGKTGPQGERGIPGADGRPGEQGPQGLQGPPGMMGNPGERGLQGEPGKDGEQGLQGPQGPKGDAGRDGSPGIQGPQGPQGSAGERGPQGQTGPTGFPGMPGTAGQPGSPGKEGEPGIAGPAGPPGLIGPRGERGYPGERGQPGQAGTPGEKGETGSQGADGPPGPEGARGSKGHPGPIGAMGMPGPRGPTGFAGEKGERGAAGPNGVDGPPGRQGDQGPQGPVGPAGPPGEPAERGEPGTAGVPGEPGAPGSTGERGQPGLQGSPGLPGSPGLTGMPGLKGDRGYSGPKGQQGLPGSPGVPGEMGLRGLPGVAGAKGARGEQGHKGDPGHAGLPGRPGDLGPPGPQGSTGPAGAAGIQGAKGASGEAGRPGPPGPIGLTGSAGPEGPKGERGSEGEQGPQGQAGPPGSAGERGPSGLPGMVGPPGPQGLRGTQGESGTPGKPGADGAQGLPGAPGLQGPPGPMGEPGPEGRPGKQGQPGISGRPGDKGPIGPPGSSGSPGLPGMQGPPGPSGPTGPTGERGPRGELGPPGVDGPQGPSGKQGPPGLDGAKGERGEAGADGSKGHAGLPGLPGMVGAPGRVGERGLPGPMGPPGKDGDVGPRGTPGRDGSSGPQGQMGPPGGRGPAGDPGKHGPPGPSGPPGPPGPPGEGLAYDAAAIAAMLQQGSIKGPDPLGDDPNSLPPRFFKDDMSLSERKEIVIKAYERLKVSLDKFLKPDGSKDAPAKTCGDIKYHHPSFESGQYWIDPNGGDMNDAIMVHCDMSTGASCVYPKPMQTQDISYKGEEKEPWLSEMEEGFTINYKADHTQLTYLQLLSLKAVQNVTLHCRNTVGYFDPSTKNYKRGIKLLAYNDAEILPKANNRLRYTALLDECQYKKSSWAKTIVEYSTDKPGRLPLLDVAIRDVGKPNQTFRVELGLACFM

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5K31     E-value=1.32873e-42,     Score=441

Ontologies

KEGG
101746136    K19719 collagen, type II, alpha | (RefSeq) fibril-forming collagen alpha chain-like
PATHWAY
04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)
GO
GO:0005201   GO:0015074   GO:0004591   GO:0006099   GO:0030976   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

Topology

Length:
1401
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01401
Exp number, first 60 AAs:
0.01385
Total prob of N-in:
0.00068
outside
1  -  1401
 
 

Population Genetic Test Statistics

Pi
25.951515
Theta
22.059241
Tajima's D
0.686556
CLR
0.663905
CSRT
0.577171141442928
Interpretation
Uncertain
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