SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03601  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006319
Annotation
farnesoic_acid_O-methyltransferase_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.248 Extracellular   Reliability : 1.402
 

Sequence

CDS
ATGCCAGGCACATACCGTTGGGTCCCCGCTTGCTTAAGCCAGCGCAGCATCCCACCAGGTGCCCTCAGGGTCGGTACCGATGCTGACGGTGATGAGATCTACGCGGGAAGAGCTCACCACGAAGGTGACATCGTTCCGGCCAAAGTCATTCCGACCAAAAACGCGTGTTATATTTCTTTCGGTGGTGAAGAGGTTCTAAAAGACCAGTTTGAGGTACTAGTACCATCCATGTTCGCCTGGCAGTTCTCGACAAATGGCGAAGTCCCGCCCGGCGCTGTCGAGGCTGGCTCCACAGCTGACGGGGAGAAGCTTTACTTCGGCAGGGTCAATCATGACGGATGCACTACGCCTGGCAAGATCCACCCGTCACACGCATGTTGCTATTACCCGTTTGATGGCGAAGAAAGGAGCTCCGCAGAATATGAATGCTTGGTACTAATGTAG
Protein
MPGTYRWVPACLSQRSIPPGALRVGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPSMFAWQFSTNGEVPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHPSHACCYYPFDGEERSSAEYECLVLM

Summary

EMBL
KC888749    AGS17914.1    KC888750    AGS17915.1    DQ813502    ABG67688.1    + More
KQ459249    KPJ02384.1    KQ460647    KPJ13193.1    GDQN01009819    JAT81235.1    HM449878    ADO33013.1    AGBW02013676    OWR42992.1    GBRD01001403    JAG64418.1    KZ149893    PZC78947.1    AGBW02007937    OWR54409.1    NWSH01000685    PCG74799.1    ODYU01003568    SOQ42498.1    KC888748    AGS17913.1    BABH01026017    KC888752    AGS17917.1    BABH01026018    PCG74797.1    JTDY01002686    KOB70922.1    PCG74798.1    GANO01004684    JAB55187.1    GGFL01006017    MBW70195.1    GGFL01005922    MBW70100.1    GGFM01001227    MBW21978.1    GGFJ01010426    MBW59567.1    GGFJ01010330    MBW59471.1    GGFK01002432    MBW35753.1    ADMH02001054    ETN64274.1    GGFM01001314    MBW22065.1    GAMD01000849    JAB00742.1    GGFK01001468    MBW34789.1    AJWK01027190    AJWK01027191    AJWK01027192    GGFJ01009373    MBW58514.1    UFQS01003168    UFQT01003168    SSX15306.1    SSX34681.1    GGFJ01009296    MBW58437.1    CH477333    EAT43284.1    UFQT01000381    SSX23783.1    AAAB01008960    EDO63791.1    EAA11278.4    EAT43286.1    GGFK01001227    MBW34548.1    GGFK01001228    MBW34549.1    GFDF01009866    JAV04218.1    EAT43285.1    GGFL01000677    MBW64855.1    GFDF01009609    JAV04475.1    LBMM01005114    KMQ91802.1    ADMH02001746    ETN61198.1    GFDL01005762    JAV29283.1    EDO63790.1    DS232168    EDS36544.1    GL437108    EFN71117.1    AXCN02000945    GL766050    EFZ15666.1    GDAI01001358    JAI16245.1    JXUM01034614    JXUM01034615    JXUM01034616    KQ561030    KXJ79965.1    KK107151    QOIP01000003    EZA57286.1    RLU25055.1    GGFK01012362    MBW45683.1    GGFM01004357    MBW25108.1    GGFM01004192    MBW24943.1    UFQS01000040    UFQT01000040    SSW98248.1    SSX18634.1    KQ981029    KYN10188.1    AXCM01017129    AXCM01003759    AXCN02000886    GL450313    EFN81184.1    ADTU01003883    KQ976701    KYM77297.1    GDHC01000778    JAQ17851.1    KQ983114    KYQ47335.1    CVRI01000052    CRK99717.1    EAA11407.3    APCN01005876    GFDF01009934    JAV04150.1    KB632375    ERL93905.1    KZ288292    PBC29177.1   
Pfam
PF11901   DUF3421
Interpro
IPR024518   DUF3421        + More
IPR006616   DM9_repeat       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
SUPFAM
SSF57424   SSF57424       
Gene 3D
PDB
5MH1     E-value=1.60208e-14,     Score=187

Ontologies

Topology

Length:
147
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.14043
outside
1  -  147
 
 

Population Genetic Test Statistics

Pi
168.779386
Theta
163.346791
Tajima's D
-0.724249
CLR
309.207029
CSRT
0.191690415479226
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
27102218 VNHDGCTTPGK 100.00 3e-07
28556443 IHPSHACCYYPFDGEER 100.00 3e-07
28556443 IHPSHACCYYPFDGEER 100.00 3e-07
28556443 WVPACLSQR 100.00 3e-07
28556443 VEDEIATLR 100.00 3e-07
28556443 NACYISFGGEEVLK 100.00 6e-04
28556443 NACYISFGGEEVLK 100.00 6e-04
28556443 NACYISFGGEEVLK 100.00 6e-04
28556443 IHPSHACCYYPFDGEER 100.00 6e-04
28556443 IHPSHACCYYPFDGEER 100.00 6e-04
26822097 WVPACISQR 100.00 0.003
26280517 VGSYNEFR 100.00 0.003
24093152 VGSTFANSGGVVHNVNR 100.00 0.003
27102218 TTTHIFNVEMTCEGCSGAVER 100.00 0.003
28467696 VGSYAQQQQPAYDAQDNYKPGAQYTGAAGK 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 LDEVLK 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 NACYISFGGEEVLK 100.00 0.003
28556443 NACYISFGGEEVLK 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.019
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