SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03600  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006318
Annotation
farnesoic_acid_O-methyltransferase_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.946
 

Sequence

CDS
ATGGCAGGCACATATCGTTGGGTTCCTGCTTGCTTAAATCAAGGCAGCATTCCACCAGGTGCCCTCAGAGTCGGTACCGATGCCGATGGAGACGAAATCTACGCTGGAAGAGCTCCTCACGAGGGTGAAATTGTTCCCGCCAAGGTTATTCCGAACAAGAACGTTTGCTTTATATCGTTCTGCGGCGAGGAAATTTTAAAGGACCAGTTTGAGGTGCTTGTTCCGACTTTCTTCGCTTGGCAGTTTGCCTCGAACGGTGAACTTCCCCCTGGTGCAGTGAACTTTGGTGTCACAGCCGATGGTGAGAGACTCTACTACGGTAGGGTCACTCGCGATGGACTGACGACGCCTGGCAAGATTCAACCTTCGCATGGTTGCTGTTATTTTCCCCTCGATGGCGGAGAACAGAGCTCCACTGAATATGAATGTTTGGTGCTTATATAA
Protein
MAGTYRWVPACLNQGSIPPGALRVGTDADGDEIYAGRAPHEGEIVPAKVIPNKNVCFISFCGEEILKDQFEVLVPTFFAWQFASNGELPPGAVNFGVTADGERLYYGRVTRDGLTTPGKIQPSHGCCYFPLDGGEQSSTEYECLVLI

Summary

EMBL
KC888748    AGS17913.1    BABH01026017    KC888752    AGS17917.1    KC888749    + More
AGS17914.1    KQ459249    KPJ02384.1    DQ813502    ABG67688.1    KC888750    AGS17915.1    ODYU01003568    SOQ42498.1    AGBW02013676    OWR42992.1    KQ460647    KPJ13193.1    HM449878    ADO33013.1    GDQN01009819    JAT81235.1    GBRD01001403    JAG64418.1    AGBW02007937    OWR54409.1    NWSH01000685    PCG74799.1    KZ149893    PZC78947.1    PCG74797.1    BABH01026018    PCG74798.1    JTDY01002686    KOB70922.1    AXCN02000945    GANO01004684    JAB55187.1    GGFL01006017    MBW70195.1    GGFM01001227    MBW21978.1    GGFL01005922    MBW70100.1    AAAB01008960    EAA11278.4    GAMD01000849    JAB00742.1    ADMH02001054    ETN64274.1    EDO63791.1    GGFK01002432    MBW35753.1    GGFM01001314    MBW22065.1    GGFK01001468    MBW34789.1    GGFK01001227    MBW34548.1    GGFK01001228    MBW34549.1    GGFJ01010426    MBW59567.1    GGFJ01010330    MBW59471.1    EDO63790.1    LBMM01005114    KMQ91802.1    CH477333    EAT43284.1    EAT43286.1    GFDL01005762    JAV29283.1    GGFL01000677    MBW64855.1    GGFJ01009373    MBW58514.1    GGFJ01009296    MBW58437.1    EAT43285.1    DS232168    EDS36544.1    AXCM01017129    JXUM01034614    JXUM01034615    JXUM01034616    KQ561030    KXJ79965.1    AJWK01027190    AJWK01027191    AJWK01027192    UFQS01003168    UFQT01003168    SSX15306.1    SSX34681.1    GDAI01001358    JAI16245.1    UFQT01000381    SSX23783.1    UFQS01000040    UFQT01000040    SSW98248.1    SSX18634.1    GL766050    EFZ15666.1    KQ976701    KYM77297.1    KQ981029    KYN10188.1    GL437108    EFN71117.1    ADTU01003883    GFDF01009866    JAV04218.1    GFDF01009609    JAV04475.1    ADMH02001746    ETN61198.1    KK107151    QOIP01000003    EZA57286.1    RLU25055.1    GGFK01012362    MBW45683.1    GGFM01004192    MBW24943.1    GGFM01004357    MBW25108.1    CVRI01000052    CRK99717.1    AK416938    BAN20153.1    GL450313    EFN81184.1    AK417024    BAN20239.1    KQ983114    KYQ47335.1    GFDF01009934    JAV04150.1    GANO01004728    JAB55143.1    AXCM01003759    KZ288292    PBC29177.1    EU035819    ABV44721.1    ACPB03019349    AXCN02000886    GBHO01007991    JAG35613.1   
Pfam
PF11901   DUF3421
Interpro
IPR024518   DUF3421        + More
IPR006616   DM9_repeat       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
SUPFAM
SSF57424   SSF57424       
Gene 3D
PDB
5MH1     E-value=2.62184e-13,     Score=176

Ontologies

Topology

Length:
147
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01229
Exp number, first 60 AAs:
0.00099
Total prob of N-in:
0.20895
outside
1  -  147
 
 

Population Genetic Test Statistics

Pi
292.658951
Theta
139.868759
Tajima's D
0.696591
CLR
0.436523
CSRT
0.572571371431428
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 WVPACLNQGSIPPGALR 100.00 2e-06
28556443 WVPACLNQGSIPPGALR 100.00 2e-06
28556443 WVPACLNQGSIPPGALR 100.00 2e-06
28556443 VGTDADGDEIYAGR 100.00 2e-06
28556443 APHEGEIVPAK 100.00 2e-06
28556443 WVPACLNQGSIPPGALR 100.00 2e-04
26822097 WVPACISQR 100.00 0.003
26280517 VGSYNEFR 100.00 0.003
24093152 VGSTFANSGGVVHNVNR 100.00 0.003
27102218 TTTHIFNVEMTCEGCSGAVER 100.00 0.003
28467696 VGSYAQQQQPAYDAQDNYKPGAQYTGAAGK 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 LDEVLK 100.00 0.003
28556443 VGTDADGDEIYAGR 100.00 0.003
28556443 NACYISFGGEEVLK 100.00 0.003
28556443 NACYISFGGEEVLK 100.00 0.003
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