SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03599
Pre Gene Modal
BGIBMGA006318
Annotation
PREDICTED:_uncharacterized_protein_LOC101745994_[Bombyx_mori]
Location
Bomo_Chr6(+):13304761-13308678      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.582
 

Sequence

CDS
ATGTTGTTTAATGACAGCAAAGAACATGAAGATGTAACAGTTGTAGACCAAGATTTACCTACAACAACTGTTGTAGCTATTCGCAGAAAAAACTACGATATAGTCACCACACACAGTACAAAAACTACAGAAAAAAGGGACAAAGGAAAAATAATTCAGAGCATAGTCAGTGGAGTACAGTCTTTGGCTCAGAAATTAGCGAAAGAGAACAATTTAAGTAAAGATATGAAATCACTTATTGATCATCTAAAGAAGACTATAAAAAATCTTTTGAAAAAAAAGAAAAAAGGCGGGAAACCATTAAATGAAAATTTGTATACGGACATAATAGCTGCCGGTGTTAATTTGATGATTAAAAATAACTCGAAACAAACATTTTTAGAGGAAACCAGAAGGAATAATAAAGATGTCAAAGACAGTGCTGAGATTAAAAGTGATATAAAAAGAAAGAATTTTCTACTTAGAAATACAACTCCGTTCACAAAACCACGGAAAGTGAACACAAAATGTAAATATGCTATTGACAAGGCATGTTCCGAAATTAGATCTATGCAGAATTACATTTGTCGTTACGATAAAGCTGAAATACCTCTAGATAGATTATGTAATCGTATTAATGACTGCCTAGATAAATCAGATGAAAAAAATTGTGTCAAAACAGCCGTAGAAAGGATTAAAGGAACCGGCGATATCATAAACAGCCTAGAAATATCTATATCCAATAATTGGCCCAAATATGACTCAGACTTCAATAACGATACGGTACGGAAAATATCGAACGAGGCCGCTTTAGTAGTGAGTTCGCTAGTTATGGCCATAGAGGGTTCATTGTGTGCGCGCAGATTTGGACTAAGCAACATCGATGAGATTGCCATACGACATAGTGACGATTCTGACCCAGACGAAGCGTTAGACGAAGTTCTAAAAACAGCATCCTGGTCGCCTAACAGCTGCGTCTGCAACGGGCCGGTGTGCCGACATTACGATTGCCCTGCGCTATGTAAACGTCTTTGCTGGCAGAGATACAGTCTGAAGAGATGGACTTGTCACGCAATAGACGAGGGCCCTAGTATCCCTCTAGATTATTTATGTGATGGCAAATATGACTGTTATGATGAAACCGATGAGTTGGATTGTTCTACAGGAGAATACTACGGTAAATTCGACAGCAGTGTAATATACAAAAACATACTCAAAAACATAGGGATAAAGACGAAATCAAAAAAATACGGATTCGTTCTAACCGAACTACTCACACTTCATGAAACCGTCGCATTACTACAGAAACTCGGTCTCGAAAGTAATTTGGAAACGATGAACGTTAAAATTGTACGGGACCAATGCTTTTCGACGATCTCAGACATATACGAGAGGTCTACGTTGATGGTCACTAATATCGTACAACTGAACGAGATTTACGATTATCTGATGACACTAAACCGAATGCTGGTTGACGCTATGAAGCGATCTCGAACGGGAAACGAAAGGATAATTCCTACGGAAGGTTGCATGTGTAAAGGAACTCGTTGCGTATTACTAAGATGCTCAGAATCATGTAAAAGAACATGCACTGTTCAACATAAGTTCACTAAATACAGCTGTAACAGAAAGATGAATCAATTTATACCTGTTGAAAAAGTGTGCGACGGATTGCCGGATTGTCCGGATGATGAAGATGAAAATGATTGTCAAAAAGAAGTTTGTCGGATCCATCATTTAGTACTTCTTCGTCACAATATTCAGAACGTGGGCCACAAACATAGAGGAACAGCGCTAGGCGAAGCTCTTGATGCTTGGAAAACAAAGGTAACAAACGCCCTGTTAATAACAGAACGAAATGGGAGACCTAATCGGAAAACTCTCGAAGATGTCGTAGCCAACATGCTCCAAGATCTGCTCAAGACGTATGCGACGCTCGAGAATTACAGACGCGGAGCAACCAATAATAACTTGAAAGAGTTCGTTAATATCTCACAGCAATTAATCAAAATTTTGAAATCTTGTTGGAATTAA
Protein
MLFNDSKEHEDVTVVDQDLPTTTVVAIRRKNYDIVTTHSTKTTEKRDKGKIIQSIVSGVQSLAQKLAKENNLSKDMKSLIDHLKKTIKNLLKKKKKGGKPLNENLYTDIIAAGVNLMIKNNSKQTFLEETRRNNKDVKDSAEIKSDIKRKNFLLRNTTPFTKPRKVNTKCKYAIDKACSEIRSMQNYICRYDKAEIPLDRLCNRINDCLDKSDEKNCVKTAVERIKGTGDIINSLEISISNNWPKYDSDFNNDTVRKISNEAALVVSSLVMAIEGSLCARRFGLSNIDEIAIRHSDDSDPDEALDEVLKTASWSPNSCVCNGPVCRHYDCPALCKRLCWQRYSLKRWTCHAIDEGPSIPLDYLCDGKYDCYDETDELDCSTGEYYGKFDSSVIYKNILKNIGIKTKSKKYGFVLTELLTLHETVALLQKLGLESNLETMNVKIVRDQCFSTISDIYERSTLMVTNIVQLNEIYDYLMTLNRMLVDAMKRSRTGNERIIPTEGCMCKGTRCVLLRCSESCKRTCTVQHKFTKYSCNRKMNQFIPVEKVCDGLPDCPDDEDENDCQKEVCRIHHLVLLRHNIQNVGHKHRGTALGEALDAWKTKVTNALLITERNGRPNRKTLEDVVANMLQDLLKTYATLENYRRGATNNNLKEFVNISQQLIKILKSCWN

Summary

Uniprot
H9J9X3   A0A2W1BV72   A0A2H1VNW9   A0A194R6P9   A0A212ENC0  
Pubmed
19121390    28756777    26354079    22118469   
EMBL
BABH01026017    KZ149893    PZC78948.1    ODYU01003568    SOQ42498.1    KQ460647    + More
KPJ13194.1    AGBW02013676    OWR42992.1   
Proteomes
UP000005204    UP000053240    UP000007151   
PRIDE
H9J9X3   
Pfam
PF11901   DUF3421        + More
PF00057   Ldl_recept_a
Interpro
IPR006616   DM9_repeat        + More
IPR024518   DUF3421       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
SUPFAM
SSF57424   SSF57424       
Gene 3D
4.10.400.10    
CDD
cd00112  LDLa
ProteinModelPortal
H9J9X3   A0A2W1BV72   A0A2H1VNW9   A0A194R6P9   A0A212ENC0  

Ontologies

KEGG
101745994    no KO assigned | (RefSeq) uncharacterized LOC101745994
GO
GO:0016740   GO:0005515   GO:0015074   GO:0004591   GO:0006099   GO:0030976   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

Topology

Length:
670
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01331
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00073
outside
1  -  670
 
 

Population Genetic Test Statistics

Pi
237.543762
Theta
177.129746
Tajima's D
1.106784
CLR
0.00293
CSRT
0.67951602419879
Interpretation
Uncertain
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