Gene

KWMTBOMO03597

Pre Gene Modal

BGIBMGA006317

Annotation

PREDICTED:_CCR4-NOT_transcription_complex_subunit_6_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):13281801-13293195      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.303 PlasmaMembrane   Reliability : 1.556

CDS

ATGTGGTTAACGAGAGCTGCGTCAGTGTTAAGAGACACGGCCCGATACATAATGAATACTTTATCTGTTGCAGGCATCTTCACGGTGATGTGCTATAACGTGTTGTGCGACAAGTACGCGACAAGACAGATGTACGGCTACTGTCCGAGTTGGGCGCTCGAGTGGGACTACAGGAAGAAGGGTATTTTAGACGAAATTAGGCATTACTCAGCAGACCTTATTAGTTTACAGGAAGTCGAAACGGATCAGTTCTATAATTTTTTCCTGCCAGAATTAAAACAGGACGGTTATGACGGAATTTTCTCGCCGAAATCTCGTGCAAAGACGATGTCAGAATCGGAGAGGAAATACGTCGACGGCTGTGCAATATTTTTCAGATCTGCAAAGTTCGCATTAGTTAAGGAGCACCTCATAGAGTTCAATCAGCTGGCGATGGCCAACAGCGAGGGATCAGACAACATGTTAAATCGAGTAATGCCGAAGGACAACATAGGTCTTGCAGCCTTATTGAAGACTAAAGAAGCCGCCTGGGAGAATGGTAATGTTGCTAGTCTACCAACGGACTCGTCAATGATCGGCCAGCCGATACTCGTCTGCACAGCTCACATCCACTGGGACCCAGAGTTTTGCGACGTGAAACTCATCCAAACGATGATGTTAAGCAACGAACTCAGAACGATCCTGGACGATTCGGGAAGGACATTACGTCTCGCCGGACAGAGAGACAACGTGCAGCTGTTGCTCTGCGGGGACTTCAATTCCTTGCCTGACAGCGGCGTGGTCGAGTTCCTGTCCGCGGGGCGCGTCTCGTCTGAGCACCGCGACTTCAAGGAGCTCGGTTACGCGACGTCCCTGCGCCGCATGCCCGGCTCCGAGCACGAGTTCACGCACAACTTCAAGCTGGCCTCGGCCTACAGCGAGGACATCATGCCCTACACCAACTACACGTTTGACTTCAAAGGTATTATCGACTACATATTCTACAGTAAACAGACGATGACCCCCTTAGGGTTGTTGGGTCCCTTGTCTCAGGAATGGTTCCGCGAGCACAAGGTCGTTGGCTGTCCTCATCCGCACATACCTTCAGATCACTTCCCGCTGCTAGTTGAGCTGGAGATGTCCCCAAGCACGAGCGGCAACTCGAACGGTCTGATCGGCCGCAGGTAG

Protein

MWLTRAASVLRDTARYIMNTLSVAGIFTVMCYNVLCDKYATRQMYGYCPSWALEWDYRKKGILDEIRHYSADLISLQEVETDQFYNFFLPELKQDGYDGIFSPKSRAKTMSESERKYVDGCAIFFRSAKFALVKEHLIEFNQLAMANSEGSDNMLNRVMPKDNIGLAALLKTKEAAWENGNVASLPTDSSMIGQPILVCTAHIHWDPEFCDVKLIQTMMLSNELRTILDDSGRTLRLAGQRDNVQLLLCGDFNSLPDSGVVEFLSAGRVSSEHRDFKELGYATSLRRMPGSEHEFTHNFKLASAYSEDIMPYTNYTFDFKGIIDYIFYSKQTMTPLGLLGPLSQEWFREHKVVGCPHPHIPSDHFPLLVELEMSPSTSGNSNGLIGRR

Uniprot

H9J9X2   A0A2A4JTR2   A0A2H1WK44   A0A2W1C1F0   A0A194QA83   A0A212ENC7   + More
A0A0L7LUG5   A0A158NGC5   A0A0C9QBJ1   K7IY09   A0A195F1D6   A0A232FAG4   A0A182M5I9   A0A182QRD3   A0A182PLG6   A0A182RI29   A0A1B6GUG2   A0A3F2YSL0   Q7PHD6   A0A1B6HNF1   A0A1Q3G0G2   A0A1Q3G0C1   A0A1B6M6E9   A0A1B6GN47   A0A182GYR1   A0A2M4CTC6   A0A2M3Z722   A0A2M4AGT2   A0A2M4BRG4   A0A1W7R5K2   A0A2M4ALW3   A0A0P6IV40   A0A182KZT2   A0A182JAP9   A0A182SNL3   A0A1L8DGB7   W5JSW9   Q16KP3   A0A182FAF0   A0A1B6DP66   A0A084W3D9   U5EWB3   A0A1J1J3R7   A0A1A9Y109   A0A034VBG2   A0A0A1X6R6   A0A1B0A1L8   A0A1A9VAG3   W8BNW5   W8CA70   A0A1Y1MNJ0   I5ANY9   A0A0P9A2F2   A0A139WMR9   A0A0L0BYJ6   I5ANZ1   A0A139WMX1   A0A0P9CCF2   A0A1I8NBS3   A0A0K8WGX7   A0A0K8W417   A0A1I8NBR7   A0A1I8NBR4   A0A1Y1MNI4   A0A224XEE1   A0A0P8YPN7   A0A069DZ85   A0A023F4L8   T1HSH1   A0A0Q9WUX3   A0A0Q9X6F8   A0A2J7RS33   A0A0M5J4L3   A0A0Q9WAS8   A0A0Q9WZ05   A0A1B0G523   A0A336MBF0   A0A1W4WVI9   A0A3B0KAI5   A0A1W4US32   A0A3B0JKD7   Q8MTZ5   A0A1W4V5V3   A0A1I8NRN8   Q7K112   Q8IMX1   Q9VCB6   A0A0R1E6E7   A0A3B0KGB6   A0A0R1E5V2   A0A0K8W4M9   J9JWD6   A0A2H8TH81   A0A0Q9VZU6   Q8IMX0   A0A0R1E745   T1IXS6   E9G5I7   A0A0P4Z4Y4   A0A0P5XCF2  

Pubmed

19121390    28756777    26354079    22118469    26227816    21347285    + More
20075255    28648823    12364791    14747013    17210077    26483478    26999592    20966253    20920257    23761445    17510324    24438588    25348373    25830018    24495485    28004739    15632085    17994087    18057021    18362917    19820115    26108605    25315136    26334808    25474469    11747467    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    21292972   

EMBL

BABH01026016    NWSH01000685    PCG74782.1    ODYU01009196    SOQ53450.1    KZ149893    + More
PZC78950.1    KQ459249    KPJ02387.1    AGBW02013676    OWR42994.1    JTDY01000061    KOB79100.1    ADTU01014789    ADTU01014790    ADTU01014791    ADTU01014792    ADTU01014793    GBYB01000624    JAG70391.1    KQ981864    KYN34278.1    NNAY01000626    OXU27317.1    AXCM01000106    AXCN02001206    GECZ01003697    JAS66072.1    APCN01005808    AAAB01008898    EAA44583.2    GECU01031503    GECU01012334    JAS76203.1    JAS95372.1    GFDL01001789    JAV33256.1    GFDL01001790    JAV33255.1    GEBQ01008513    JAT31464.1    GECZ01005938    JAS63831.1    JXUM01098067    KQ564392    KXJ72348.1    GGFL01004337    MBW68515.1    GGFM01003539    MBW24290.1    GGFK01006626    MBW39947.1    GGFJ01006453    MBW55594.1    GEHC01001199    JAV46446.1    GGFK01008449    MBW41770.1    GDUN01000328    JAN95591.1    GFDF01008669    JAV05415.1    ADMH02000180    ETN67457.1    CH477947    EAT34872.1    GEDC01009841    JAS27457.1    ATLV01019934    KE525286    KFB44733.1    GANO01000642    JAB59229.1    CVRI01000069    CRL07040.1    GAKP01020064    JAC38888.1    GBXI01014878    GBXI01007954    JAC99413.1    JAD06338.1    GAMC01006028    GAMC01006027    JAC00528.1    GAMC01006026    JAC00530.1    GEZM01026115    JAV87233.1    CM000070    EIM52674.1    CH902617    KPU80718.1    KPU80721.1    KQ971312    KYB29329.1    JRES01001160    KNC25090.1    EIM52676.2    KYB29330.1    KPU80720.1    GDHF01001977    JAI50337.1    GDHF01029958    GDHF01028526    GDHF01015296    GDHF01006689    JAI22356.1    JAI23788.1    JAI37018.1    JAI45625.1    GEZM01026114    JAV87234.1    GFTR01007062    JAW09364.1    KPU80719.1    GBGD01001080    JAC87809.1    GBBI01002440    JAC16272.1    ACPB03008338    CH964232    KRF99336.1    CH933806    KRG00948.1    NEVH01000595    PNF43639.1    CP012526    ALC45836.1    CH940656    KRF78354.1    KRF78356.1    KRG00949.1    CCAG010008343    UFQT01000793    SSX27270.1    OUUW01000007    SPP82686.1    SPP82685.1    AY043267    AAK85705.1    AE014297    AY069458    AAF56258.2    AAF56259.2    AAL39603.1    AAO41599.1    BT010039    AAN13986.1    AAQ22508.1    BT001344    AAF56256.2    AAN71099.1    CM000160    KRK04589.1    KRK04591.1    SPP82688.1    KRK04592.1    GDHF01006258    JAI46056.1    ABLF02032684    ABLF02032685    GFXV01001660    MBW13465.1    KRF78355.1    AAN13987.1    KRK04590.1    JH431661    GL732532    EFX85626.1    GDIP01217910    JAJ05492.1    GDIP01074224    JAM29491.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000005205    + More
UP000002358    UP000078541    UP000215335    UP000075883    UP000075886    UP000075885    UP000075900    UP000075840    UP000007062    UP000069940    UP000249989    UP000075882    UP000075880    UP000075901    UP000000673    UP000008820    UP000069272    UP000030765    UP000183832    UP000092443    UP000092445    UP000078200    UP000001819    UP000007801    UP000007266    UP000037069    UP000095301    UP000015103    UP000007798    UP000009192    UP000235965    UP000092553    UP000008792    UP000092444    UP000192223    UP000268350    UP000192221    UP000095300    UP000000803    UP000002282    UP000007819    UP000000305   

PRIDE

H9J9X2    Q8MTZ5    Q8IMX1    Q8IMX0   

Pfam

PF03372   Exo_endo_phos        + More
PF13855   LRR_8
PF12799   LRR_4

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.80.10.10    

ProteinModelPortal

H9J9X2   A0A2A4JTR2   A0A2H1WK44   A0A2W1C1F0   A0A194QA83   A0A212ENC7   + More
A0A0L7LUG5   A0A158NGC5   A0A0C9QBJ1   K7IY09   A0A195F1D6   A0A232FAG4   A0A182M5I9   A0A182QRD3   A0A182PLG6   A0A182RI29   A0A1B6GUG2   A0A3F2YSL0   Q7PHD6   A0A1B6HNF1   A0A1Q3G0G2   A0A1Q3G0C1   A0A1B6M6E9   A0A1B6GN47   A0A182GYR1   A0A2M4CTC6   A0A2M3Z722   A0A2M4AGT2   A0A2M4BRG4   A0A1W7R5K2   A0A2M4ALW3   A0A0P6IV40   A0A182KZT2   A0A182JAP9   A0A182SNL3   A0A1L8DGB7   W5JSW9   Q16KP3   A0A182FAF0   A0A1B6DP66   A0A084W3D9   U5EWB3   A0A1J1J3R7   A0A1A9Y109   A0A034VBG2   A0A0A1X6R6   A0A1B0A1L8   A0A1A9VAG3   W8BNW5   W8CA70   A0A1Y1MNJ0   I5ANY9   A0A0P9A2F2   A0A139WMR9   A0A0L0BYJ6   I5ANZ1   A0A139WMX1   A0A0P9CCF2   A0A1I8NBS3   A0A0K8WGX7   A0A0K8W417   A0A1I8NBR7   A0A1I8NBR4   A0A1Y1MNI4   A0A224XEE1   A0A0P8YPN7   A0A069DZ85   A0A023F4L8   T1HSH1   A0A0Q9WUX3   A0A0Q9X6F8   A0A2J7RS33   A0A0M5J4L3   A0A0Q9WAS8   A0A0Q9WZ05   A0A1B0G523   A0A336MBF0   A0A1W4WVI9   A0A3B0KAI5   A0A1W4US32   A0A3B0JKD7   Q8MTZ5   A0A1W4V5V3   A0A1I8NRN8   Q7K112   Q8IMX1   Q9VCB6   A0A0R1E6E7   A0A3B0KGB6   A0A0R1E5V2   A0A0K8W4M9   J9JWD6   A0A2H8TH81   A0A0Q9VZU6   Q8IMX0   A0A0R1E745   T1IXS6   E9G5I7   A0A0P4Z4Y4   A0A0P5XCF2  

PDB

5DV4     E-value=3.10754e-125,     Score=1148

KEGG

101745857    K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] | (RefSeq) CCR4-NOT transcription comp

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0000175   GO:0030014   GO:0005634   GO:0005737   GO:0004535   GO:0000289   GO:0048132   GO:0017148   GO:0048477   GO:0005829   GO:0006402  

Length:

388

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

18.79313

Exp number, first 60 AAs:

18.76182

Total prob of N-in:

0.40432

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  35

outside

36  -  388

 

 

Pi

250.781161

Theta

177.474427

Tajima's D

1.223473

CLR

0.458762

CSRT

0.722813859307035

Interpretation

Uncertain