Gene

KWMTBOMO03591  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006314

Annotation

PREDICTED:_CCR4-NOT_transcription_complex_subunit_6_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr6(+):13072082-13088458      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.227

CDS

ATGTCTCGCAACAAAGACAAGCACGAGGGCGCGAGTGGGCGCACATACCATATCATGTCGGAAGCAGAACGAGCCTCTGGTCGTAGAGGAGGTTGGACTACTCTTGAGGTAACAGGAGGTGTGCGCGCCCTAGCGCCGCCCCTCTTTCAGCTGACTCACTTGACAGCGCTGTATTTGAACGACAACTCACTGCAGCGCATCCCTACCGACATCAATCAACTCGTCAACTTGCACACACTGGACATATCCAACAATAAACTGAGATCGCTGCCCGTCGAGCTAGGAGACCTAATACAGCTCAGAGAACTACACCTGCATAATAACTACCTAAGAGCACTGCCTTATGAACTTGGTAGGCTCTTCCACCTTCAGTTGCTCGGGCTACAGGGGAACCCCCTGAACAAGGAGATGCTGTCGATATACAACGACTCCAACGGAACCGCCAAGCTGATCACGTACATGCTCGACAACTTGCAAGGATTTGTGAACTAA

Protein

MSRNKDKHEGASGRTYHIMSEAERASGRRGGWTTLEVTGGVRALAPPLFQLTHLTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNYLRALPYELGRLFHLQLLGLQGNPLNKEMLSIYNDSNGTAKLITYMLDNLQGFVN

Uniprot

A0A2H1WPJ4   A0A2A4JY56   A0A2W1C458   A0A194R5V2   A0A212ENE3   A0A1B0G3N8   + More
A0A1B0BML7   A0A1I8PY95   A0A1I8PY73   A0A1I8PYA6   A0A2P8XFB0   A0A067RLH4   A0A2J7RS40   B4QT23   A0A154PKH7   A0A087ZWS0   A0A310SD06   A0A1I8NBR4   A0A1I8NRN8   A0A2A3E686   A0A1I8NBR7   A0A1I8NBS3   E2BIU0   A0A0M9A558   V5IAR0   A0A1B0GIR1   A0A182XF65   A0A182NCU7   A0A232F7S3   W8BNW5   A0A1A9Y115   W8CA70   A0A1B0A1M2   A0A182RI27   A0A182MBV3   A0A182VB76   A0A1J1J3Q9   A0A1A9WEG6   A0A182KZT1   A0A182PLG8   A0A3B0KAI5   A0A0L0BYB9   A0A0P9A2F2   A0A182K4W1   A0A034VBG2   A0A182Y910   A0A0L7QK79   A0A182FAF2   A0A3B0JKD7   A0A182TJJ1   I5ANY9   A0A182W382   A0A0C9PI81   A0A182S859   Q9VCB6   Q7K112   Q8IMX1   A0A0K8W417   A0A0Q9WUX3   A0A182JDJ9   A0A0R1E5V2   A0A0R1E6E7   E1ZYW2   A0A0A1X6R6   A0A0M5J4L3   A0A0Q9WZ05   A0A1W4V5V3   A0A0Q9WAS8   A0A195E6M4   A0A195CJ40   A0A0J7L091   A0A151XC72   E0VEB6   K7IY09   A0A3F2YSL0   Q7PHD6   A0A0K8WGX7   A0A0K8W4M9   A0A158NGC4   A0A195B209   A0A2M4CTC6   A0A2M3Z722   A0A0C9QBJ1   A0A2G8LPD2   T1I0H8   A0A2M4AGT2   Q8MTZ5   W5JWQ2   A0A139WMR9   A0A1S3H7E4   A0A1W4XPJ4   N6TE50   A0A195F146   A0A3L8DP30   N6UN29   A0A0A9WJI8   A0A146LS46   H9F1P1  

Pubmed

28756777    26354079    22118469    29403074    24845553    17994087    + More
25315136    20798317    28648823    24495485    20966253    26108605    18057021    25348373    25244985    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25830018    20566863    20075255    12364791    14747013    17210077    21347285    29023486    11747467    20920257    23761445    18362917    19820115    23537049    30249741    25401762    26823975    25319552   

EMBL

ODYU01010110    SOQ54983.1    NWSH01000409    PCG76608.1    KZ149893    PZC78953.1    + More
KQ460647    KPJ13198.1    AGBW02013676    OWR42996.1    CCAG010005909    JXJN01017002    JXJN01017003    PYGN01002348    PSN30698.1    KK852553    KDR21470.1    NEVH01000595    PNF43635.1    CM000364    EDX14187.1    KQ434946    KZC12352.1    KQ776227    OAD52197.1    KZ288354    PBC27257.1    GL448535    EFN84372.1    KQ435732    KOX77447.1    GALX01000750    JAB67716.1    AJWK01015302    AJWK01015303    AJWK01015304    NNAY01000745    OXU26715.1    GAMC01006028    GAMC01006027    JAC00528.1    GAMC01006026    JAC00530.1    AXCM01000104    CVRI01000069    CRL07031.1    OUUW01000007    SPP82686.1    JRES01001160    KNC25015.1    CH902617    KPU80718.1    KPU80721.1    GAKP01020064    JAC38888.1    KQ415027    KOC58931.1    SPP82685.1    CM000070    EIM52674.1    GBYB01000623    JAG70390.1    AE014297    BT001344    AAF56256.2    AAN71099.1    AY069458    AAF56258.2    AAF56259.2    AAL39603.1    AAO41599.1    BT010039    AAN13986.1    AAQ22508.1    GDHF01029958    GDHF01028526    GDHF01015296    GDHF01006689    JAI22356.1    JAI23788.1    JAI37018.1    JAI45625.1    CH964232    KRF99336.1    CM000160    KRK04592.1    KRK04589.1    KRK04591.1    GL435242    EFN73652.1    GBXI01014878    GBXI01007954    JAC99413.1    JAD06338.1    CP012526    ALC45836.1    CH933806    KRG00949.1    CH940656    KRF78354.1    KRF78356.1    KQ979568    KYN20845.1    KQ977754    KYN00084.1    LBMM01001501    KMQ96192.1    KQ982314    KYQ57953.1    DS235088    EEB11722.1    APCN01005808    AAAB01008898    EAA44583.2    GDHF01001977    JAI50337.1    GDHF01006258    JAI46056.1    ADTU01014752    ADTU01014753    KQ976662    KYM78508.1    GGFL01004337    MBW68515.1    GGFM01003539    MBW24290.1    GBYB01000624    JAG70391.1    MRZV01000018    PIK62129.1    ACPB03012976    GGFK01006626    MBW39947.1    AY043267    AAK85705.1    ADMH02000180    ETN67459.1    KQ971312    KYB29329.1    APGK01032936    KB740857    KB631671    ENN78624.1    ERL85246.1    KQ981864    KYN34290.1    QOIP01000006    RLU22157.1    APGK01006335    KB736713    ENN83155.1    GBHO01035635    JAG07969.1    GDHC01009142    JAQ09487.1    JU324794    AFE68550.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000092444    UP000092460    UP000095300    + More
UP000245037    UP000027135    UP000235965    UP000000304    UP000076502    UP000005203    UP000095301    UP000242457    UP000008237    UP000053105    UP000092461    UP000076407    UP000075884    UP000215335    UP000092443    UP000092445    UP000075900    UP000075883    UP000075903    UP000183832    UP000091820    UP000075882    UP000075885    UP000268350    UP000037069    UP000007801    UP000075881    UP000076408    UP000053825    UP000069272    UP000075902    UP000001819    UP000075920    UP000075901    UP000000803    UP000007798    UP000075880    UP000002282    UP000000311    UP000092553    UP000009192    UP000192221    UP000008792    UP000078492    UP000078542    UP000036403    UP000075809    UP000009046    UP000002358    UP000075840    UP000007062    UP000005205    UP000078540    UP000230750    UP000015103    UP000000673    UP000007266    UP000085678    UP000192223    UP000019118    UP000030742    UP000078541    UP000279307   

PRIDE

Q8IMX1    Q8MTZ5   

Pfam

PF13855   LRR_8        + More
PF12799   LRR_4
PF03372   Exo_endo_phos
PF17906   HTH_48

Interpro

IPR032675   LRR_dom_sf        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR025875   Leu-rich_rpt_4       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR041426   Mos1_HTH       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.80.10.10     3.60.10.10    

ProteinModelPortal

A0A2H1WPJ4   A0A2A4JY56   A0A2W1C458   A0A194R5V2   A0A212ENE3   A0A1B0G3N8   + More
A0A1B0BML7   A0A1I8PY95   A0A1I8PY73   A0A1I8PYA6   A0A2P8XFB0   A0A067RLH4   A0A2J7RS40   B4QT23   A0A154PKH7   A0A087ZWS0   A0A310SD06   A0A1I8NBR4   A0A1I8NRN8   A0A2A3E686   A0A1I8NBR7   A0A1I8NBS3   E2BIU0   A0A0M9A558   V5IAR0   A0A1B0GIR1   A0A182XF65   A0A182NCU7   A0A232F7S3   W8BNW5   A0A1A9Y115   W8CA70   A0A1B0A1M2   A0A182RI27   A0A182MBV3   A0A182VB76   A0A1J1J3Q9   A0A1A9WEG6   A0A182KZT1   A0A182PLG8   A0A3B0KAI5   A0A0L0BYB9   A0A0P9A2F2   A0A182K4W1   A0A034VBG2   A0A182Y910   A0A0L7QK79   A0A182FAF2   A0A3B0JKD7   A0A182TJJ1   I5ANY9   A0A182W382   A0A0C9PI81   A0A182S859   Q9VCB6   Q7K112   Q8IMX1   A0A0K8W417   A0A0Q9WUX3   A0A182JDJ9   A0A0R1E5V2   A0A0R1E6E7   E1ZYW2   A0A0A1X6R6   A0A0M5J4L3   A0A0Q9WZ05   A0A1W4V5V3   A0A0Q9WAS8   A0A195E6M4   A0A195CJ40   A0A0J7L091   A0A151XC72   E0VEB6   K7IY09   A0A3F2YSL0   Q7PHD6   A0A0K8WGX7   A0A0K8W4M9   A0A158NGC4   A0A195B209   A0A2M4CTC6   A0A2M3Z722   A0A0C9QBJ1   A0A2G8LPD2   T1I0H8   A0A2M4AGT2   Q8MTZ5   W5JWQ2   A0A139WMR9   A0A1S3H7E4   A0A1W4XPJ4   N6TE50   A0A195F146   A0A3L8DP30   N6UN29   A0A0A9WJI8   A0A146LS46   H9F1P1  

PDB

4B8C     E-value=6.4315e-13,     Score=174

KEGG

101745857    K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] | (RefSeq) CCR4-NOT transcription comp

GO

GO:0005737   GO:0030014   GO:0017148   GO:0000289   GO:0048132   GO:0004535   GO:0005829   GO:0006402   GO:0048477   GO:0016021   GO:0000175   GO:0005634   GO:0005515   GO:0016624   GO:0004591   GO:0006099   GO:0030976   GO:0051103   GO:0005524   GO:0008270   GO:0042555   GO:0048384  

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05802

Exp number, first 60 AAs:

0.05311

Total prob of N-in:

0.39564

outside

1  -  163

 

 

Pi

252.663102

Theta

179.799648

Tajima's D

0.769906

CLR

0.458221

CSRT

0.591770411479426

Interpretation

Uncertain