Silkworm Genome Informatics Database

Gene

KWMTBOMO03588

Pre Gene Modal

BGIBMGA006278

Annotation

PREDICTED:_transmembrane_protein_135-like_isoform_X1_[Papilio_machaon]

Location

Bomo_Chr6(-):13052262-13055541 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.835

CDS

ATGCTCCGTGCAGTAATACCTAAAATCCTGACTCCGATGAAAGCGTTGAAGTCCCTAAGACTGGCCCATTTGAGACTGGGAATTTTCTTCGGAGGCTACATAGGAATATATAGGCTGGTGGTTTGTGCACTGTGTCGAGCGTATGGCAGGGACAGCGCTTCTTACGCGTTGCCCGCGGGCCTCCTCGCCGGCGCCGCGTTCAGGGCGGCCCCCTCCACGCCGATCGCGTTGGCCCCGATCACGTCCTCCCTGCAAATCTTGGCGTCGTGGGCGTATCAGCGCGAGATGTTACCGGCGAACCTGCCGCTGGTCGAGATACTGTATTGCTTGTGTCAGGGGCTGTTGTTCCACGCTCGCGTCATGCACGAGGACGCCTGCCCCCGGTACATCATCAACCTGATGCACACCGTCACCAGCTCTAAGGCCGATCAAATTCAAGGTGCTTTCATAGAGAAAATGTTGAAGAGCTTGTGA

Protein

MLRAVIPKILTPMKALKSLRLAHLRLGIFFGGYIGIYRLVVCALCRAYGRDSASYALPAGLLAGAAFRAAPSTPIALAPITSSLQILASWAYQREMLPANLPLVEILYCLCQGLLFHARVMHEDACPRYIINLMHTVTSSKADQIQGAFIEKMLKSL

Uniprot

H9J9T5 A0A2W1BZE3 A0A2A4JX66 A0A2A4JX65 A0A1E1VXJ1 A0A2H1WRC7 + More
A0A194R6Q3 A0A212FAJ5 A0A194QBM3 A0A2A4JXW2 A0A212F8J9 A0A0N1IFT7 A0A2H1W4F7 A0A2A4JXJ7 A0A2W1BV29 A0A1E1W710 A0A194QFU1 A0A212F9A8 H9J9R2

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01025997 KZ149893 PZC78954.1 NWSH01000409 PCG76607.1 PCG76605.1 + More
GDQN01011660 JAT79394.1 ODYU01010110 SOQ54984.1 KQ460647 KPJ13199.1 AGBW02009470 OWR50748.1 KQ459249 KPJ02390.1 PCG76606.1 AGBW02009711 OWR50051.1 KQ460170 KPJ17226.1 ODYU01006255 SOQ47928.1 NWSH01000391 PCG76737.1 PZC78908.1 GDQN01010648 GDQN01008315 GDQN01007732 JAT80406.1 JAT82739.1 JAT83322.1 KQ459011 KPJ04357.1 AGBW02009622 OWR50303.1 BABH01026127

Proteomes

UP000005204 UP000218220 UP000053240 UP000007151 UP000053268

PRIDE

H9J9T5 H9J9R2

Pfam

PF15982 TMEM135_C_rich

Interpro

IPR026749 Tmem135 + More
IPR031926 TMEM135_N

ProteinModelPortal

H9J9T5 A0A2W1BZE3 A0A2A4JX66 A0A2A4JX65 A0A1E1VXJ1 A0A2H1WRC7 + More
A0A194R6Q3 A0A212FAJ5 A0A194QBM3 A0A2A4JXW2 A0A212F8J9 A0A0N1IFT7 A0A2H1W4F7 A0A2A4JXJ7 A0A2W1BV29 A0A1E1W710 A0A194QFU1 A0A212F9A8 H9J9R2

KEGG

101740488 no KO assigned | (RefSeq) transmembrane protein 135-like

GO

GO:0016021

PANTHER

PTHR12459

Length:

157

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

33.2486

Exp number, first 60 AAs:

21.97374

Total prob of N-in:

0.65743

POSSIBLE N-term signal

sequence

inside

1 - 20

TMhelix

21 - 40

outside

41 - 157

Pi

202.628702

Theta

130.354627

Tajima's D

0.985128

CLR

0.337384

CSRT

0.658667066646668

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree