Gene

KWMTBOMO03570

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr6(-):12495502-12498731      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon X-element       + More
Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.757 Nuclear   Reliability : 1.984

CDS

ATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCATCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGCTTTTCCGTGTACGTCACCTGTCATCCTGATGGAGGGGCCCACGCTGGCACCGCGATAATTATCAAGAACGGTATAAAGCATTATCTCCTGGAATCTACTGCGGCTCCCTATCTCCAATCCACAACTGTAAGGGTGGAGGATCGTTCCGGACCCCTAATCCTTTCTGCGATATATTGTCCACCGCGCCACACAATAAAAGAAAAAATGTTTACTGAGTTTTTTATGTCTTTAGGCAACCGATTCATTGCTGGTGGCGATTGGAATGCCAAGCATACATACTGGGGCTCAAGATTAACAGTAACTAGAGGTCGGGAATTGAAAAAGAGCATTGAAACTAATCACTTGTTAGCTATGACAACTGGAGAGCCCACATATTGGCCTACGGACAGTAACAAAATACCAGACCTCCTAGATTTCTTTATTACTAAGGGTATCAGCGCACAAAATACTCTGATAAAGGCAAGTCTCGACGGCAGCTCTGACCATTCACCTGTCTTGCTTACGCTTAGCTCAATGGCTATGCCCAGCGATACCCATACCGTCTATCTCCACAATTATAGAACTGATTGGCAATGTTTTCGGGAATTCCTCGAATCAAACATAAACCTATGTATTCCACTCAAAACCAAAGATGACGTTGACGACGCATGCCTCTATATTACAAACTTTATTCAAGTGGCAGCTTGGTCTAGTACACCCGAGCTGAAGGGTCTATCGAGAGGGGCTCCAATCCCTCTTGCTATCAAGGAAAAAATCGCCGCCAAACGTCGCCTTCGCAAAATTTGGCAGACAACCCACCGATGTGCGGATAAAACCAGACTAAATCGAGCTATTAAAGAACTCAAAGATCTTCTGGATTACGCTTCAAACGAATCACTCACGCAGAGATTGGAAAAAATGTCTCCAAATGCAAATGGCTCTCACAACCTCTGGAAGGCAACAAAGTACCTCCCACAGCCGCAGCAGTGCTCTCCGCCTTTAAGATCCGGTAATAAATGGGCGCGAACTGACCAGGAAAAATCTCAGGCCTTCGCTATATACCTGGCTGAAGTATTTAAACCCAACAGTACGGATAGTCCAGAGGATCCCGAAATAAACCGAGTATTAAAGCAAGACTTGCAATTATGCCTACCCTTGAGTCCTACAACACCAAAAGAGATAGCTAGAGAAATAGCCAAAATGGACCATAATAAAGCGCCTGGATTTGACTTGGTTACTCCCAGACTATTGAAAGAGCTCCCTAGGAGGTGCATTCTCTTTTTGACCATTCTTGTCAATGCCACATTGAGAATGTCGTATTTCCCTGCACTCTGGAAAACATCCCAAATTGTGATGATCCAAAAACCTGGGAAACCGCCTAACGAGGTGTCTTCTTATCGCCCTATTAGCCTGACGCCGGTTTTGTCAAAGTTATGGGAAAGGATCTTCTTGGCACGATTATCCCCTTGCCTGGATGCATGCCATATAATACCTGACCACCAATTTGGCTTCCGGAAGCACCACTCAACCATAGAACAGGTACACAGAGTGTATTGTACAATAAGACATTGTCTGGAGAGGAAAGAGTACTGTTCTGCTGCTTTTCTCGACGTACAACAAGCTTTTGATCGAGTTTGGCATAGGGGACTGCTCTGTAAAATTAAAAAGTACCTTCCACATTCCTACTTTCTGCTGTTAGAGTCTTATCTCAGTGACAGAAGGTTTCAAGTCAAGCTCCGTGATGCCAGATCTTCTGTCTTTGCCTGCAGAGCCGGAGTGCCCCAAGGCTCCGTACTTGGTCCGGTCCTCTACAACATTTTTACTAGCGATTTACCCCAGTCACCAGAAATAGCTGTAGCAACCTTTGCCGATGATGCAGCCTTCCTCAGTTGTAGCAGTGATCCTAATGAAGCGACTAGACTGTTGCAAACCCAGCTCGATGTCACTAACACTTGGATGACCAAGTGGCGCATTAAAGCTAGCGCCCCCAAGTCTCACCACATCACATTTACCCTAAGACGTGATACTTATCCTCCAGTCAAACTCGGCCACGATACATTGCCGCAATCAACCTGTGTTAAGTATCTTGGATTCCACTTGGACCGAAGGATGACATGGAAAGACCACATAAAAACGAAACGTAACGAAATTAACATTAGATTTAAAAACCTACTCTGGCTTCTCGGTAGACAGGCTGCCTTATCCCTATCCAACAAGCTACGGGTGTATTGTTCAATAATAAAACCGATCTGGACGTATGGAATCCAACTGTGGTCGACAGCCAGCAAATCCAACATTATGTGCCTCCAGAGAGCTCAAAACAGTATCCTGAGGGTACTCTCGTCGGCGCCTTGGTATACTCGAAATTCGGAAATCCACGAGTACCTGGAAATCCCAACCATCTTGGATGAAGTTAAACGATACTCAGCCAACTATAAGAACCGCTTGAAAGCTCACCCAAACCCGTTGTCCGGCTTACTATTGCAGCCAAATCCGATTAAAAGACTCAAGAGAGCCGACGTGCTACCCTACTAA

Protein

MKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFISNTRGRLRDPGFSVYVTCHPDGGAHAGTAIIIKNGIKHYLLESTAAPYLQSTTVRVEDRSGPLILSAIYCPPRHTIKEKMFTEFFMSLGNRFIAGGDWNAKHTYWGSRLTVTRGRELKKSIETNHLLAMTTGEPTYWPTDSNKIPDLLDFFITKGISAQNTLIKASLDGSSDHSPVLLTLSSMAMPSDTHTVYLHNYRTDWQCFREFLESNINLCIPLKTKDDVDDACLYITNFIQVAAWSSTPELKGLSRGAPIPLAIKEKIAAKRRLRKIWQTTHRCADKTRLNRAIKELKDLLDYASNESLTQRLEKMSPNANGSHNLWKATKYLPQPQQCSPPLRSGNKWARTDQEKSQAFAIYLAEVFKPNSTDSPEDPEINRVLKQDLQLCLPLSPTTPKEIAREIAKMDHNKAPGFDLVTPRLLKELPRRCILFLTILVNATLRMSYFPALWKTSQIVMIQKPGKPPNEVSSYRPISLTPVLSKLWERIFLARLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRHCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSVFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEATRLLQTQLDVTNTWMTKWRIKASAPKSHHITFTLRRDTYPPVKLGHDTLPQSTCVKYLGFHLDRRMTWKDHIKTKRNEINIRFKNLLWLLGRQAALSLSNKLRVYCSIIKPIWTYGIQLWSTASKSNIMCLQRAQNSILRVLSSAPWYTRNSEIHEYLEIPTILDEVKRYSANYKNRLKAHPNPLSGLLLQPNPIKRLKRADVLPY

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon X-element

Uniprot

A0A2A4K918   A0A2J7R7D0   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7PSM7   A0A2J7QES2   + More
A0A2A4IUM2   A0A2J7RQ52   A0A2J7R098   A0A2J7PMN4   A0A2J7QB68   A0A2J7PVX3   A0A2J7PDM0   A0A0J7MYU2   A0A2J7RD70   A0A2J7Q0S7   A0A1Y1LKN6   A0A1Y1KFR3   J9LYS0   A0A142LX26   A0A0A9YU04   A0A0A9YJ00   A0A224X6T4   A0A034VFD2   A0A1B6EGD8   A0A142LX53   A0A2S2N6Q7   A0A0M4EWX7   Q04135   Q6R811   A0A0J7K7J8   A0A224X724   A0A142LX49   A0A224XI99   A0A224X6U5   A0A224XJI0   Q961V7   A0A2S2N814   A0A2S2PJG2   A0A352X8G4   Q24335   A0A224XIB0   A0A2S2NH02   A0A2S2NPJ7   A0A224X6R6   A0A2H8TF37   A0A0A9YSX4   A0A2S2NGV8   A0A2J7R8R8   A0A224XHW8   A0A2S2PHL7   A0A069DX78   A0A0V0G5B6   A0A0J7KN58   A0A224X746   X1WUG2   A0A2S2P698   A0A2S2QDN9   A0A0J7K811   A0A0J7NDW4   A0A2S2P6S3   A0A2H8TKI9   A0A023F069   A0A2J7PVE7   A0A224X6S1   A0A2S2NPG3   A0A2S2P3X8   A0A023F0I3   J9KSK5   A0A2S2NKC3   A0A2S2P6C4   A0A224X6W2   A0A1Y1MT28   A0A2S2P7B2   A0A2S2PUS3   A0A224XK92   A0A146KRW8   A0A2S2QEE0   A0A0J7K3N0   A0A2S2PA10   A0A2S2R9D4   A0A1L8DIZ6   J9KWJ0   X1XLN5   Q9NBX4   J9KE07   J9M0H4   A0A224X7Z3   A0A146KV64   J9LMA3   A0A2S2N9P4   J9KLB1   A0A2S2PBB4   A0A2S2Q2R8   A0A2S2PX53   Q95SX7  

EC Number

2.7.7.49

Pubmed

28004739    25527032    25401762    25348373    1705654    14745026    + More
30148503    2441397    26334808    25474469    26823975    11405632    7753626    12537569   

EMBL

NWSH01000032    PCG80496.1    NEVH01006736    PNF36716.1    NEVH01007402    PNF35856.1    + More
NEVH01016340    PNF25410.1    NEVH01021925    PNF19341.1    NEVH01015305    PNF27092.1    NWSH01007753    PCG62823.1    NEVH01001347    PNF42959.1    NEVH01008277    PNF34262.1    NEVH01023979    PNF17579.1    NEVH01016302    PNF25823.1    NEVH01020940    PNF20481.1    NEVH01026386    PNF14434.1    LBMM01013518    KMQ85605.1    NEVH01005295    PNF38784.1    NEVH01019963    PNF22185.1    GEZM01053022    JAV74219.1    GEZM01084969    JAV60363.1    ABLF02041861    KU543673    AMS38352.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GFTR01008261    JAW08165.1    GAKP01017773    JAC41179.1    GEDC01000337    JAS36961.1    KU543687    AMS38379.1    GGMR01000226    MBY12845.1    CP012527    ALC48130.1    X17551    CAA35587.1    AY508487    AAS13459.1    LBMM01012041    KMQ86458.1    GFTR01008169    JAW08257.1    KU543685    AMS38375.1    GFTR01008256    JAW08170.1    GFTR01008251    JAW08175.1    GFTR01008257    JAW08169.1    AY047531    AAK77263.1    GGMR01000676    MBY13295.1    GGMR01016905    MBY29524.1    DNOY01000259    HBE18313.1    M17214    AAA28508.1    GFTR01008246    JAW08180.1    GGMR01003864    MBY16483.1    GGMR01006491    MBY19110.1    GFTR01008269    JAW08157.1    GFXV01000908    MBW12713.1    GBHO01008295    JAG35309.1    GGMR01003407    MBY16026.1    NEVH01006721    PNF37225.1    GFTR01008254    JAW08172.1    GGMR01016296    MBY28915.1    GBGD01000389    JAC88500.1    GECL01003538    JAP02586.1    LBMM01005178    KMQ91747.1    GFTR01008151    JAW08275.1    ABLF02016613    GGMR01012305    MBY24924.1    GGMS01006655    MBY75858.1    LBMM01012078    KMQ86419.1    LBMM01006314    KMQ90710.1    GGMR01012443    MBY25062.1    GFXV01002840    MBW14645.1    GBBI01003810    JAC14902.1    NEVH01020963    PNF20308.1    GFTR01008271    JAW08155.1    GGMR01006408    MBY19027.1    GGMR01011511    MBY24130.1    GBBI01003747    JAC14965.1    ABLF02014118    ABLF02014121    ABLF02054790    GGMR01005022    MBY17641.1    GGMR01012283    MBY24902.1    GFTR01008260    JAW08166.1    GEZM01021881    JAV88842.1    GGMR01012676    MBY25295.1    GGMR01020516    MBY33135.1    GFTR01007997    JAW08429.1    GDHC01020244    JAP98384.1    GGMS01006359    MBY75562.1    LBMM01015125    KMQ84919.1    GGMR01013409    MBY26028.1    GGMS01017365    MBY86568.1    GFDF01007661    JAV06423.1    ABLF02021819    ABLF02021820    ABLF02055326    ABLF02017755    ABLF02044739    ABLF02063495    ABLF02065698    ABLF02066197    AF237761    AAF81411.1    ABLF02024784    ABLF02024792    ABLF02034460    GFTR01007929    JAW08497.1    GDHC01018248    JAQ00381.1    ABLF02025048    ABLF02063033    GGMR01000857    MBY13476.1    ABLF02040174    ABLF02040183    ABLF02055266    GGMR01014053    MBY26672.1    GGMS01002786    MBY71989.1    GGMS01000737    MBY69940.1    AY060438    AAL25477.1   

Proteomes

UP000218220    UP000235965    UP000036403    UP000007819    UP000092553   

PRIDE

Q04135    Q961V7    Q24335    Q9NBX4    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4K918   A0A2J7R7D0   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7PSM7   A0A2J7QES2   + More
A0A2A4IUM2   A0A2J7RQ52   A0A2J7R098   A0A2J7PMN4   A0A2J7QB68   A0A2J7PVX3   A0A2J7PDM0   A0A0J7MYU2   A0A2J7RD70   A0A2J7Q0S7   A0A1Y1LKN6   A0A1Y1KFR3   J9LYS0   A0A142LX26   A0A0A9YU04   A0A0A9YJ00   A0A224X6T4   A0A034VFD2   A0A1B6EGD8   A0A142LX53   A0A2S2N6Q7   A0A0M4EWX7   Q04135   Q6R811   A0A0J7K7J8   A0A224X724   A0A142LX49   A0A224XI99   A0A224X6U5   A0A224XJI0   Q961V7   A0A2S2N814   A0A2S2PJG2   A0A352X8G4   Q24335   A0A224XIB0   A0A2S2NH02   A0A2S2NPJ7   A0A224X6R6   A0A2H8TF37   A0A0A9YSX4   A0A2S2NGV8   A0A2J7R8R8   A0A224XHW8   A0A2S2PHL7   A0A069DX78   A0A0V0G5B6   A0A0J7KN58   A0A224X746   X1WUG2   A0A2S2P698   A0A2S2QDN9   A0A0J7K811   A0A0J7NDW4   A0A2S2P6S3   A0A2H8TKI9   A0A023F069   A0A2J7PVE7   A0A224X6S1   A0A2S2NPG3   A0A2S2P3X8   A0A023F0I3   J9KSK5   A0A2S2NKC3   A0A2S2P6C4   A0A224X6W2   A0A1Y1MT28   A0A2S2P7B2   A0A2S2PUS3   A0A224XK92   A0A146KRW8   A0A2S2QEE0   A0A0J7K3N0   A0A2S2PA10   A0A2S2R9D4   A0A1L8DIZ6   J9KWJ0   X1XLN5   Q9NBX4   J9KE07   J9M0H4   A0A224X7Z3   A0A146KV64   J9LMA3   A0A2S2N9P4   J9KLB1   A0A2S2PBB4   A0A2S2Q2R8   A0A2S2PX53   Q95SX7  

PDB

6AR3     E-value=0.000377866,     Score=107

KEGG

101737297    no KO assigned | (RefSeq) esterase FE4-like

GO

GO:0003964   GO:0006313  

Length:

908

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14615

Exp number, first 60 AAs:

0.00032

Total prob of N-in:

0.00382

outside

1  -  908

 

 

Pi

399.936912

Theta

236.776225

Tajima's D

2.74387

CLR

0.516937

CSRT

0.965001749912504

Interpretation

Uncertain