Gene

KWMTBOMO03568

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):12449138-12451841      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.245

CDS

ATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGATTTATATATTAGTATAGAGTATAGGCTGCAGGGCGGAATCGATAGAGATAGTTGGTTGACGAAATCGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAGATATAGTACTGTGCTATAG

Protein

MSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPDLYISIEYRLQGGIDRDSWLTKSRRDETRRDETRRDETRRDETRERERERERERERERERERERERERENRYSTVL

Uniprot

Q93137   K9N5J5   Q9XXW0   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
O96544   A0A0N1PFV1   O96546   V5I850   V5GNF3   V5GNJ2   A0A1Y1NA23   A0A139WA11   X1WLB2   A0A1Y1M7E9   A0A2J7QQP1   A0A2S2PH29   A0A224XF24   A0A2J7RRU8   A0A2S2PX53   A0A2S2NGV8   A0A0A9Z4E6   A0A2H8TES1   A0A0J7MT32   A0A087TPE4   A0A2J7PVX3   A0A2J7RL12   A0A2J7RS81   A0A0J7K4E0   A0A023F742   A0A2J7PU96   A0A2J7RIW7   A0A2J7Q059   X1X5Q5   A0A2A4K8E7   A0A2J7RM10   A0A2J7R4B7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7QUJ9   A0A2J7R7D0   A0A2J7RB54   A0A2J7RPU2   A0A2S2N814   A0A2J7Q627   A0A0A9YJ00   A0A2J7PVE7   A0A2J7PMP9   A0A1Y1LKN6   A0A2J7QFL0   A0A2J7RS77   A0A2M4BDV6   A0A2S2QTZ8   A0A2J7Q0Q6   X1WZH0   A0A2J7QR37   A0A2J7R6U1   A0A2J7RKP3   A0A2J7R2E1   O76197   A0A2S2RAN7   A0A2J7Q6J2   A0A2J7QB68   A0A2A4K918   A0A2M4BD67   X1WN18   A0A2J7Q1Y9   A0A2J7QEZ4   A0A2J7PBY3  

Pubmed

23652563    10333566    26354079    10380107    28004739    18362917    + More
19820115    25401762    25474469    8934517   

EMBL

U07847    AAA17752.1    KC165845    AFY12622.1    AB018558    BAA76304.1    + More
AB055391    BAB21761.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    AF081101    AAC72919.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    GALX01005300    JAB63166.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GEZM01038405    JAV81653.1    NEVH01012084    PNF30905.1    GGMR01016114    MBY28733.1    GFTR01008038    JAW08388.1    NEVH01000598    PNF43535.1    GGMS01000737    MBY69940.1    GGMR01003407    MBY16026.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GFXV01000774    MBW12579.1    LBMM01018951    KMQ83660.1    KK116158    KFM66983.1    NEVH01020940    PNF20481.1    NEVH01002704    PNF41489.1    NEVH01000269    PNF43694.1    LBMM01014395    KMQ85192.1    GBBI01001693    JAC17019.1    NEVH01021205    PNF19912.1    NEVH01003017    PNF40781.1    NEVH01020071    PNF21969.1    ABLF02041993    NWSH01000032    PCG80497.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01010546    PNF32261.1    NEVH01006736    PNF36716.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GGMR01000676    MBY13295.1    NEVH01017542    PNF24034.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01020963    PNF20308.1    NEVH01023961    PNF17613.1    GEZM01053022    JAV74219.1    NEVH01014858    PNF27387.1    NEVH01000280    PNF43672.1    GGFJ01001857    MBW50998.1    GGMS01012005    MBY81208.1    NEVH01019964    PNF22161.1    ABLF02034467    NEVH01011985    PNF31054.1    NEVH01006754    PNF36554.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    AF012049    AAC24972.1    GGMS01017914    MBY87117.1    NEVH01017470    PNF24199.1    NEVH01016302    PNF25823.1    PCG80496.1    GGFJ01001858    MBW50999.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01019376    PNF22596.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01027074    PNF13841.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000036403    UP000054359    + More
UP000218220   

PRIDE

Q93137    K9N5J5    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   K9N5J5   Q9XXW0   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
O96544   A0A0N1PFV1   O96546   V5I850   V5GNF3   V5GNJ2   A0A1Y1NA23   A0A139WA11   X1WLB2   A0A1Y1M7E9   A0A2J7QQP1   A0A2S2PH29   A0A224XF24   A0A2J7RRU8   A0A2S2PX53   A0A2S2NGV8   A0A0A9Z4E6   A0A2H8TES1   A0A0J7MT32   A0A087TPE4   A0A2J7PVX3   A0A2J7RL12   A0A2J7RS81   A0A0J7K4E0   A0A023F742   A0A2J7PU96   A0A2J7RIW7   A0A2J7Q059   X1X5Q5   A0A2A4K8E7   A0A2J7RM10   A0A2J7R4B7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7QUJ9   A0A2J7R7D0   A0A2J7RB54   A0A2J7RPU2   A0A2S2N814   A0A2J7Q627   A0A0A9YJ00   A0A2J7PVE7   A0A2J7PMP9   A0A1Y1LKN6   A0A2J7QFL0   A0A2J7RS77   A0A2M4BDV6   A0A2S2QTZ8   A0A2J7Q0Q6   X1WZH0   A0A2J7QR37   A0A2J7R6U1   A0A2J7RKP3   A0A2J7R2E1   O76197   A0A2S2RAN7   A0A2J7Q6J2   A0A2J7QB68   A0A2A4K918   A0A2M4BD67   X1WN18   A0A2J7Q1Y9   A0A2J7QEZ4   A0A2J7PBY3  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

492

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.421150000000001

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.01628

outside

1  -  492

 

 

Pi

270.945477

Theta

30.77167

Tajima's D

3.1706

CLR

14.314632

CSRT

0.987850607469626

Interpretation

Uncertain