SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03568
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.245
 

Sequence

CDS
ATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGATTTATATATTAGTATAGAGTATAGGCTGCAGGGCGGAATCGATAGAGATAGTTGGTTGACGAAATCGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAGATATAGTACTGTGCTATAG
Protein
MSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPDLYISIEYRLQGGIDRDSWLTKSRRDETRRDETRRDETRRDETRERERERERERERERERERERERERENRYSTVL

Summary

EMBL
U07847    AAA17752.1    KC165845    AFY12622.1    AB018558    BAA76304.1    + More
AB055391    BAB21761.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    AF081101    AAC72919.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    GALX01005300    JAB63166.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GEZM01038405    JAV81653.1    NEVH01012084    PNF30905.1    GGMR01016114    MBY28733.1    GFTR01008038    JAW08388.1    NEVH01000598    PNF43535.1    GGMS01000737    MBY69940.1    GGMR01003407    MBY16026.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GFXV01000774    MBW12579.1    LBMM01018951    KMQ83660.1    KK116158    KFM66983.1    NEVH01020940    PNF20481.1    NEVH01002704    PNF41489.1    NEVH01000269    PNF43694.1    LBMM01014395    KMQ85192.1    GBBI01001693    JAC17019.1    NEVH01021205    PNF19912.1    NEVH01003017    PNF40781.1    NEVH01020071    PNF21969.1    ABLF02041993    NWSH01000032    PCG80497.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01010546    PNF32261.1    NEVH01006736    PNF36716.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GGMR01000676    MBY13295.1    NEVH01017542    PNF24034.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01020963    PNF20308.1    NEVH01023961    PNF17613.1    GEZM01053022    JAV74219.1    NEVH01014858    PNF27387.1    NEVH01000280    PNF43672.1    GGFJ01001857    MBW50998.1    GGMS01012005    MBY81208.1    NEVH01019964    PNF22161.1    ABLF02034467    NEVH01011985    PNF31054.1    NEVH01006754    PNF36554.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    AF012049    AAC24972.1    GGMS01017914    MBY87117.1    NEVH01017470    PNF24199.1    NEVH01016302    PNF25823.1    PCG80496.1    GGFJ01001858    MBW50999.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01019376    PNF22596.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01027074    PNF13841.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
492
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.421150000000001
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01628
outside
1  -  492
 
 

Population Genetic Test Statistics

Pi
270.945477
Theta
30.77167
Tajima's D
3.1706
CLR
14.314632
CSRT
0.987850607469626
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号