Gene

KWMTBOMO03566

Pre Gene Modal

BGIBMGA006301

Annotation

PREDICTED:_vacuolar_protein_sorting-associated_protein_72_homolog_[Amyelois_transitella]

Location

Bomo_Chr6(+):12276382-12283323      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.957

CDS

ATGGCTCAACGGGCACGAAGATCAAACGCTGGAAATCGTATGGCTAAACTCCTTGACGAGGAGGAAGAGGATGATTTTTACAAAACAACATACGGAGGGTTTAATGATGTTGAAGAGGACGTAGAATATCAACAAGAAAAGGAAGTTGATGATGAAGTTGATTCAGATTTTGATATTGATGAGAATGATGAACCAGTGTCTGACCAGGAAGTTGAAGAAAAAGCTAAAAGAAAAGTTGGCACTAAAGCTTATAAGGACCCCAATAAGAAGAAATTAAATGAAAAATCAAAAAAGACAGTCATCAAAAAATCCAAAGATGATAAATCTATAGAAGACAAAGTTGAAAAACAAAACAAAAGTGCCGTGGACAAAATTGTTGATACCTCAATAGAACGGAAGTCTATAAGACAAAGTACAGCTATGAAATCTGCCGAGACAATACAAAGGATAAAAATCAGGTCAGAGCTGAAAAAGAAGAAACCGAAGAAAGTAGAAGAGAAGATGCCGACCCAGGAAGAGCTGTTGGAAGAAGCAGTCGAGACAGAGAAAGAGAACTTAAAGAGTTTAGAACGTTTTGAACAAATCGAACTAGAACGCAAGAAGATTAGACCGATCAAAAAGACTATAACTGGACCCGTACTAAAGTACCATTCATTTGCTGTGCCCGTGTGTCTCAAACGTGACGAAGTAGATAACAGTGCGCCGCCACTGGACATAAGCATAACTGATAACATAAAAAATGAAGACGGTGTATTAACACAAGCCGATTTGGATGCTCCTGATGAGAAAATCGATACAGATCGAGTTGAGACAAAGGAAGAGCAGACCGAAGACCTTCAAACTAAAATGGAGATAGACGTGATCGGACCTGATGATGAAATTAAAATTGAAAGCGTTAATATTAAAGAACAAAAACCAAATAAGCTGAGGCACAAAAACGTGAAATATTACGAGAGGACTTTGCTTAGTTTCGAGAATGATATCAACGATGTAGCCTACAACGCCTGCTTCTTGAAGGCTCAGCCAAAGAGACGAAGGCACATGCTCTGTGCCGTCACCAAGAGACCAGCACGCTACATCGATCCGGTCACGAAGCTGCCCTACAGAAGCGTCGATGCCTTCCGAATCATCCGCGAAGCTTACTACCAGCAGCTAGAAGCGAGGGGAGATAGATCGGATCCGCAAGTGGCCGCCTGGTTACAGCATAGGAGAGCTGATGCCTCGTCTTCGTACGTACAAATACACATCAAGTAA

Protein

MAQRARRSNAGNRMAKLLDEEEEDDFYKTTYGGFNDVEEDVEYQQEKEVDDEVDSDFDIDENDEPVSDQEVEEKAKRKVGTKAYKDPNKKKLNEKSKKTVIKKSKDDKSIEDKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIKIRSELKKKKPKKVEEKMPTQEELLEEAVETEKENLKSLERFEQIELERKKIRPIKKTITGPVLKYHSFAVPVCLKRDEVDNSAPPLDISITDNIKNEDGVLTQADLDAPDEKIDTDRVETKEEQTEDLQTKMEIDVIGPDDEIKIESVNIKEQKPNKLRHKNVKYYERTLLSFENDINDVAYNACFLKAQPKRRRHMLCAVTKRPARYIDPVTKLPYRSVDAFRIIREAYYQQLEARGDRSDPQVAAWLQHRRADASSSYVQIHIK

Uniprot

H9J9V6   A0A2A4K2T5   A0A1E1WGM4   A0A212FDD2   A0A194R6R7   A0A2H1WJK8   + More
A0A2A4K581   A0A194QA49   A0A0L7LG64   A0A2J7RE98   A0A182PGS8   A0A182F7L9   A0A182J1V4   W5J8H3   A0A151XBC4   A0A067RKE2   A0A0C9RZK7   A0A084VFZ2   E0VD12   E2A5Q0   E9J0Y8   A0A182YRR1   A0A182JQJ6   A0A0J7L378   A0A195ETT9   A0A087ZNZ5   A0A182QR80   A0A182N427   F4WCL8   A0A182R662   A0A195DGA5   A0A182VZ78   A0A182V0J7   A0A2A3EP14   A0A195BWM6   A0A182WSD5   A0A182TGM0   A0A182HL86   Q8T5I1   A0A158NI47   A0A1B0DH94   K7J2T2   A0A1S4FVG6   A0A026WWR8   Q16MS1   A0A232F2C7   A0A182GR58   A0A0L7RAI3   A0A1B0CDY0   U5EWL7   A0A1Q3F059   A0A0M8ZZL3   A0A154PAG4   A0A182S8F3   A0A2P8Y4Z6   A0A1L8DI74   A0A182MKW8   B0X1Z4   A0A0V0GAU9   A0A310SGH7   A0A0K8SW11   A0A0A9X7S1   A0A0A9XI59   A0A146L5U4   T1JJ51   A0A146LNE8   A0A0P5XYU4   A0A0P5K6P6   A0A0P6IDX0   A0A0P5L0L6   A0A1L8DIK7   A0A1L8DIA5   A0A224XKL2   A0A3L8D9Y9   A0A087UPK7   A0A0P6CN13   A0A0P5W3C2   A0A2C9JVD2  

Pubmed

19121390    22118469    26354079    26227816    20920257    23761445    + More
24845553    24438588    20566863    20798317    21282665    25244985    21719571    12060762    12364791    14747013    17210077    21347285    20075255    24508170    17510324    28648823    26483478    29403074    25401762    26823975    30249741    15562597   

EMBL

BABH01025925    BABH01025926    NWSH01000224    PCG78238.1    GDQN01004901    JAT86153.1    + More
AGBW02009067    OWR51759.1    KQ460647    KPJ13214.1    ODYU01008765    SOQ52644.1    NWSH01000146    PCG79074.1    KQ459249    KPJ02403.1    JTDY01001206    KOB74543.1    NEVH01005277    PNF39159.1    ADMH02001961    ETN60266.1    KQ982327    KYQ57683.1    KK852626    KDR19904.1    GBYB01014875    GBYB01014877    JAG84642.1    JAG84644.1    ATLV01012584    KE524806    KFB36886.1    DS235070    EEB11268.1    GL437023    EFN71247.1    GL767538    EFZ13530.1    LBMM01000880    KMQ97297.1    KQ981979    KYN31294.1    AXCN02000022    GL888070    EGI68198.1    KQ980905    KYN11504.1    KZ288204    PBC33254.1    KQ976398    KYM92685.1    APCN01000884    AJ439353    AAAB01008987    CAD27931.1    EAA00898.4    ADTU01001775    AJVK01033968    KK107078    EZA60273.1    CH477851    EAT35637.1    NNAY01001153    OXU24976.1    JXUM01081933    KQ563278    KXJ74139.1    KQ414618    KOC67922.1    AJWK01008362    GANO01000508    JAB59363.1    GFDL01014105    JAV20940.1    KQ435798    KOX73326.1    KQ434857    KZC08833.1    PYGN01000924    PSN39328.1    GFDF01008014    JAV06070.1    AXCM01003048    DS232275    EDS38924.1    GECL01000958    JAP05166.1    KQ771982    OAD52512.1    GBRD01008402    JAG57419.1    GBHO01026822    JAG16782.1    GBHO01026824    JAG16780.1    GDHC01014808    JAQ03821.1    JH431845    GDHC01010749    JAQ07880.1    GDIP01078308    JAM25407.1    GDIQ01189862    JAK61863.1    GDIQ01007630    JAN87107.1    GDIQ01202119    JAK49606.1    GFDF01007884    JAV06200.1    GFDF01007875    JAV06209.1    GFTR01006068    JAW10358.1    QOIP01000011    RLU16933.1    KK120897    KFM79296.1    GDIQ01088938    JAN05799.1    GDIP01091737    JAM11978.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000235965    UP000075885    UP000069272    UP000075880    UP000000673    UP000075809    UP000027135    UP000030765    UP000009046    UP000000311    UP000076408    UP000075881    UP000036403    UP000078541    UP000005203    UP000075886    UP000075884    UP000007755    UP000075900    UP000078492    UP000075920    UP000075903    UP000242457    UP000078540    UP000076407    UP000075902    UP000075840    UP000007062    UP000005205    UP000092462    UP000002358    UP000053097    UP000008820    UP000215335    UP000069940    UP000249989    UP000053825    UP000092461    UP000053105    UP000076502    UP000075901    UP000245037    UP000075883    UP000002320    UP000279307    UP000054359    UP000076420   

PRIDE

H9J9V6   

Pfam

PF08265   YL1_C        + More
PF05764   YL1

Interpro

IPR008895   Vps72/YL1        + More
IPR013272   Vps72/YL1_C       

ProteinModelPortal

H9J9V6   A0A2A4K2T5   A0A1E1WGM4   A0A212FDD2   A0A194R6R7   A0A2H1WJK8   + More
A0A2A4K581   A0A194QA49   A0A0L7LG64   A0A2J7RE98   A0A182PGS8   A0A182F7L9   A0A182J1V4   W5J8H3   A0A151XBC4   A0A067RKE2   A0A0C9RZK7   A0A084VFZ2   E0VD12   E2A5Q0   E9J0Y8   A0A182YRR1   A0A182JQJ6   A0A0J7L378   A0A195ETT9   A0A087ZNZ5   A0A182QR80   A0A182N427   F4WCL8   A0A182R662   A0A195DGA5   A0A182VZ78   A0A182V0J7   A0A2A3EP14   A0A195BWM6   A0A182WSD5   A0A182TGM0   A0A182HL86   Q8T5I1   A0A158NI47   A0A1B0DH94   K7J2T2   A0A1S4FVG6   A0A026WWR8   Q16MS1   A0A232F2C7   A0A182GR58   A0A0L7RAI3   A0A1B0CDY0   U5EWL7   A0A1Q3F059   A0A0M8ZZL3   A0A154PAG4   A0A182S8F3   A0A2P8Y4Z6   A0A1L8DI74   A0A182MKW8   B0X1Z4   A0A0V0GAU9   A0A310SGH7   A0A0K8SW11   A0A0A9X7S1   A0A0A9XI59   A0A146L5U4   T1JJ51   A0A146LNE8   A0A0P5XYU4   A0A0P5K6P6   A0A0P6IDX0   A0A0P5L0L6   A0A1L8DIK7   A0A1L8DIA5   A0A224XKL2   A0A3L8D9Y9   A0A087UPK7   A0A0P6CN13   A0A0P5W3C2   A0A2C9JVD2  

PDB

5CHL     E-value=5.70376e-06,     Score=120

KEGG

101739577    K11664 vacuolar protein sorting-associated protein 72 | (RefSeq) vacuolar protein sorting-associated

GO

GO:0043486   GO:0006355   GO:0005634   GO:0006338  

PANTHER

PTHR13275  

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06600

outside

1  -  417

 

 

Pi

240.659041

Theta

174.291912

Tajima's D

-1.883398

CLR

4.155508

CSRT

0.0214489275536223

Interpretation

Possibly Positive selection