SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03554
Pre Gene Modal
BGIBMGA006288
Annotation
PREDICTED:_uncharacterized_protein_LOC106122406_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 1.688
 

Sequence

CDS
ATGCGGCTAAGAAGAGGTCTCACTATAGGCATTCTACTCATACTGCATATGAGCGGAACTCTCAGTGACCAGCCATCCAATGAGAATAACAATGCAGGCGGCAAAGGATCCGACTCCAGCAATGCTGTAGAACCTTCATCCGATCAACTAGCAATGGAGTCTGCTGAACGAGACGCCCCAAGTCACGCATACAATGGACCTCCTCCTCCTGTTCCACCTCCGCATAATAGACGACAGAACCCCCCGCATCACCAGGCGCATCATCCCTTGAGCATAGCTCGAATTCCAAACCACCACCCGATGCACACAAAGCAGTATGCTCTTGGACCTCCGGTTAACCACCACAAAAACGAACTAGGAGCCGGTTTCCGCGGACCACCACCCCCACCTGCTCCACCAGCAGACGCTCAAACATCAGCCAGCGAGAAAGTCTTCAGTGGCGCTGGCGATGTCTGGCCAGCACCAGCCCCAGATATGCCGAAAATCGTATCTTTAGATGTCAAATGTGAAAAGAACGCCATGAGAGTATTCCTTAGCTTCGATAAGCCATTCTTCGGCATCGTATTCTCAAAGGGACATTACTCGAATCACCAATGTGTACACTTGCCACCTAATCTAGGAAGAAACCAAGCTTCCTTTGAAATTGGGGCACATGCTTGTGGAACTGCGGGCAGTGGTGACCCCAGATACCATGGAGATGTCGCAGCAGCCGGCACGTATTTCGAAAACGTTATCGTAATACAATATGATCCTCAAGTACAAGAAGTATGGGATCAAGCCCGTAAATTGCGTTGCACGTGGCACGACCAATACGAGAAAGCGGTTACCTTCAGACCATTCCCTGTTGATATGCTAGACGTGGTCAGAGCAGACTTCGCTGGTGATAATGTCGGATGCTGGATGCAAATTCAAGTTGGAAAGGGACCCTGGGCCTCGGAAGTTTCTGGACTCGTGAAAATTGGACAAACCATGACTATGGTACTTGCTATCAAAGATGATGATGCGAAATTTGATATGCTCGTTCGAGATTGTGTAGCGCACGATGGTCAACGCGCCCCTATACAGTTAGTCGATAGGCGAGGCTGTGTGACACGACCGAAATTAATGTCCAGGTTTACGAAGATCAAGAACTTTGGTGCTAGTGCCAGTGTGCTCTCTTACGCTCACTTCCAAGCATTCAAATTCCCGGATTCCATGGAGGTTCACTTCCAATGTACCATCCAGATTTGCAGATACCGATGCCCGGATCAATGCTCTGAGGGAGGACCGAATGTTATAGCTCACGCGGAATATGGGCCACCTCAAATTGACTCGTATCCTGTTGGAGCTGAAATCAGGAGAGACGAGAGAAGAGTCAGGAGACAAAGGCGGGCCACATCTCCTGAAAAAGAAGTGGGAGTTAACAGAGTTATTCGTGTCGTTTCGGCTGGCGACCTCAATTTGGATGCATCTGAAATCAACTCCGCACCGAAGGTAGTGCCTTCTCCTGGTCTCGTGTGTATGACTACTCCAGGGTTCGCGGCAACTTTAGGAGCCCTTCTCGTTACGTTAGTCTGTTCGTGTGCCGTATCAGCAGTTCTATTCCTGAAGCTGAGGCCTATAACTAAGCTGAAGAAGAAGACGATTGCCGTGACGACGATAGCCAGGCCTCACCCACCGACCGCTCACGTCATATCAAAGAGTCGCTTCTACTCGTAA
Protein
MRLRRGLTIGILLILHMSGTLSDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNGPPPPVPPPHNRRQNPPHHQAHHPLSIARIPNHHPMHTKQYALGPPVNHHKNELGAGFRGPPPPPAPPADAQTSASEKVFSGAGDVWPAPAPDMPKIVSLDVKCEKNAMRVFLSFDKPFFGIVFSKGHYSNHQCVHLPPNLGRNQASFEIGAHACGTAGSGDPRYHGDVAAAGTYFENVIVIQYDPQVQEVWDQARKLRCTWHDQYEKAVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDAKFDMLVRDCVAHDGQRAPIQLVDRRGCVTRPKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYRCPDQCSEGGPNVIAHAEYGPPQIDSYPVGAEIRRDERRVRRQRRATSPEKEVGVNRVIRVVSAGDLNLDASEINSAPKVVPSPGLVCMTTPGFAATLGALLVTLVCSCAVSAVLFLKLRPITKLKKKTIAVTTIARPHPPTAHVISKSRFYS

Summary

EMBL
NWSH01000971    PCG73345.1    AK402738    BAM19356.1    KQ459249    KPJ02410.1    + More
BABH01025892    ODYU01009821    SOQ54501.1    AK402352    BAM18974.1    KQ460324    KPJ15846.1    JTDY01000477    KOB77003.1    CCAG010013191    JXJN01009942    DS235777    EEB16849.1    KQ971326    EEZ99885.2    GAKP01020270    GAKP01020269    GAKP01020268    JAC38683.1    GEZM01098179    GEZM01098178    JAV53961.1    AJVK01027557    JRES01001467    KNC22651.1    GDHF01025480    GDHF01025322    GDHF01025291    GDHF01016946    GDHF01010116    JAI26834.1    JAI26992.1    JAI27023.1    JAI35368.1    JAI42198.1    KK853204    KDR09865.1    CH933810    EDW06713.2    PYGN01000614    PSN43335.1    KB631644    ERL84959.1    NEVH01014836    PNF27533.1    KK107109    EZA59331.1    QOIP01000008    RLU19874.1    APGK01043777    APGK01043778    KB741017    ENN75275.1    CH916371    EDV91824.1    GL449553    EFN82489.1    OUUW01000003    SPP78779.1    CH480851    EDW51434.1    SPP78780.1    GBYB01002933    JAG72700.1    CH954180    EDV46005.1    CP012528    ALC48896.1    CH902621    EDV44586.2    AE014298    BT016046    AAF48089.1    AAV36931.1    CH379063    EAL32387.3    CH479207    EDW31021.1    CM000162    EDX02485.2    M84606    AAA28490.1    CH477244    EAT46301.1    KQ977739    KYN00211.1    KQ434948    KZC12476.1    CVRI01000004    CRK87472.1    ADTU01026362    JXUM01104632    KQ564901    KXJ71603.1    AAZX01007335    KQ981512    KYN40828.1    DS233015    EDS27512.1    JXUM01009272    KQ560279    KXJ83342.1    ABLF02040119    CH940664    EDW62969.2    KQ981017    KYN10265.1    AAAB01008847    EAA06947.5    GGMR01012963    MBY25582.1    GL438234    EFN69321.1    KQ976532    KYM81605.1    GL771752    EFZ09572.1    KQ414681    KOC63995.1    AXCN02001371    LBMM01005348    KMQ91588.1    NNAY01001991    OXU22366.1    CM000366    EDX17679.1    GFXV01001114    MBW12919.1    AXCM01000255    GL888284    EGI63312.1    KQ760545    OAD59969.1    APCN01001001    CH963925    EDW78234.2    ATLV01013410    KE524855    KFB37894.1    ADMH02000889    ETN64748.1    LRGB01003375    KZS02930.1   
Pfam
PF00100   Zona_pellucida
Interpro
IPR001507   ZP_dom       

Ontologies

Topology

SignalP
Position:   1 - 22,         Likelihood:  0.975845
 
 
Length:
565
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.94156
Exp number, first 60 AAs:
0.07014
Total prob of N-in:
0.00558
outside
1  -  506
TMhelix
507  -  529
inside
530  -  565
 
 

Population Genetic Test Statistics

Pi
270.324081
Theta
173.190979
Tajima's D
0.302001
CLR
0.434402
CSRT
0.459877006149693
Interpretation
Uncertain
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