Gene

KWMTBOMO03551  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006292

Annotation

PREDICTED:_transcription-associated_zinc_ribbon_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):11758010-11759219      View in EpiBrowser

Full name

DNA-directed RNA polymerase subunit      

Location in the cell

Extracellular   Reliability : 3.515

CDS

ATGTCCACTGAAAGCCCGTTATCAACTAGTACAGCGTTTTGTGCTCGCTGTGGGTCCATATTACCCTTGCTACAAGAGTTTGGCTCCGTGAAATGCTACACTTGTAAAGCACATTATGAGGCTGATAATTATAGTAAAATGAAATTTCAATACACAATACATTTCAATACTATATCTGTGATCACAAATGAGAATATACTACATACTGATGGTCCTGAGGGTCCAGTTGTGGAGAGAAAATGCGCTAAATGCGGTTACGACAGAATGTCATATGCAACTCTACAGTTACGATCGGCCGATGAAGGACAAACAGTTTTCTACACATGTATAAAGTGCAAATACAAGGAAACTGAAAACTCCTAA

Protein

MSTESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Similarity

Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.

Uniprot

Q1ZYJ6   A0A2H1X1X9   A0A2A4JLT4   A0A212F0V8   A0A0N0PD94   A0A194QAA8   + More
A0A1E1W007   S4PSG7   A0A0L7LNR5   U5EQG9   A0A0T6AVL2   A0A0L0BXV6   A0A1W4VPS8   D6WBZ4   B4LWP3   A0A2P8YV40   Q9VD81   A0A2A3E768   A0A1L8DID1   A0A1S3DL81   A0A158NPQ1   A0A1B0CLC9   A0A1I8P607   E2C5M5   A0A3B0JKV5   A0A2M4AVZ5   B4HM44   B4K8D8   B4QZ91   A0A067R9I3   A0A1Q3F0P4   A0A1I8MNL4   B4PKV3   Q16SW6   B4JU97   Q16SW7   B3NZY6   W8CDU1   B4NHN6   A0A034WQP8   A0A1Y1MPW4   B3LVZ2   A0A1B6GXN3   Q29AR6   B4G606   A0A182FA85   A0A2M4C3S9   W5J1F5   A0A182US58   A0A182XIB1   A0A182LFE1   Q7PR45   A0A182HT96   A0A0K8WIW5   A0A182UF37   A0A2R7WFG3   A0A0A9Z5P1   B0WS60   A0A2M4CYM7   A0A182K3C4   A0A182QE25   A0A151IMU2   A0A182RYG2   A0A0N7Z8V9   R4G7X7   A0A336LXJ7   A0A182H0M9   A0A232FMC8   K7IXE8   A0A2M3ZJW8   A0A2M3ZD73   E0VBV6   A0A195EL19   A0A182MLP1   A0A195AT83   A0A3L8DAA5   A0A0V0GDY6   A0A023EI75   A0A0M8ZN31   A0A0L7R308   A0A069DP51   A0A182W2W8   A0A1B6LDY9   A0A1A9VIX5   A0A1W4WYX6   E2B0G0   J9JU77   A0A224XPQ2   N6UG87   A0A182IKI2   A0A2M3ZD77   A0A182Y779   E9GG94   A0A2S2P0X7   A0A0P6GYA4   F4W7I7   A0A195ESW4   A0A0M5J7M9   A0A0P6BV12   A0A154P238  

Pubmed

19121390    22118469    26354079    23622113    26227816    26108605    + More
18362917    19820115    17994087    29403074    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21347285    20798317    24845553    25315136    17550304    17510324    18057021    24495485    25348373    28004739    15632085    20920257    23761445    20966253    12364791    14747013    17210077    25401762    26823975    27129103    26483478    28648823    20075255    20566863    30249741    24945155    26334808    23537049    25244985    21292972    21719571   

EMBL

BABH01025883    DQ432055    ABD76573.1    ODYU01012776    SOQ59248.1    NWSH01001070    + More
PCG72779.1    AGBW02011024    OWR47357.1    KQ460324    KPJ15849.1    KQ459249    KPJ02412.1    GDQN01010737    JAT80317.1    GAIX01013818    JAA78742.1    JTDY01000477    KOB77004.1    GANO01003268    JAB56603.1    LJIG01022753    KRT78901.1    JRES01001168    KNC24857.1    KQ971309    EEZ99110.1    CH940650    EDW67708.1    PYGN01000343    PSN48110.1    AE014297    BT050591    AAF55918.1    ACJ73151.1    KZ288351    PBC27344.1    GFDF01007949    JAV06135.1    ADTU01022705    AJWK01017076    GL452776    EFN76736.1    OUUW01000007    SPP82957.1    GGFK01011646    MBW44967.1    CH480815    EDW43092.1    CH933806    EDW16520.1    CM000364    EDX13827.1    KK852840    KDR15193.1    GFDL01013919    JAV21126.1    CM000160    EDW97902.1    CH477664    EAT37552.1    CH916374    EDV91067.1    EAT37553.1    CH954462    CH954181    EDV45162.1    EDV49984.1    GAMC01001356    JAC05200.1    CH964272    EDW84646.1    GAKP01002874    JAC56078.1    GEZM01028055    GEZM01028054    GEZM01028053    JAV86505.1    CH902617    EDV41525.1    GECZ01002584    JAS67185.1    CM000070    EAL27283.1    CH479179    EDW23773.1    GGFJ01010784    MBW59925.1    ADMH02002183    ETN57997.1    AAAB01008859    EAA07851.5    APCN01000424    GDHF01001216    JAI51098.1    KK854672    PTY17790.1    GBHO01003790    GBHO01000547    GBRD01001211    GDHC01021243    JAG39814.1    JAG43057.1    JAG64610.1    JAP97385.1    DS232065    EDS33683.1    GGFL01006201    MBW70379.1    AXCN02000218    KQ977026    KYN06251.1    GDKW01002259    JAI54336.1    ACPB03008859    GAHY01001952    JAA75558.1    UFQT01000283    SSX22762.1    JXUM01101629    KQ564663    KXJ71939.1    NNAY01000020    OXU31884.1    AAZX01000007    GGFM01008070    MBW28821.1    GGFM01005756    MBW26507.1    DS235042    EEB10862.1    KQ978730    KYN28950.1    AXCM01000066    KQ976745    KYM75433.1    QOIP01000011    RLU17072.1    GECL01000070    JAP06054.1    GAPW01004983    JAC08615.1    KQ436126    KOX67437.1    KQ414663    KOC65218.1    GBGD01003512    JAC85377.1    GEBQ01018243    JAT21734.1    GL444608    EFN60802.1    ABLF02034733    GFTR01001960    JAW14466.1    APGK01021787    KB740364    KB632275    ENN80775.1    ERL91146.1    GGFM01005711    MBW26462.1    GL732543    EFX81535.1    GGMR01010456    MBY23075.1    GDIQ01026923    LRGB01000725    JAN67814.1    KZS16307.1    GL887844    EGI69860.1    KQ981986    KYN31246.1    CP012526    ALC47818.1    GDIP01009386    JAM94329.1    KQ434803    KZC05892.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000037069    UP000192221    UP000007266    UP000008792    UP000245037    UP000000803    UP000242457    UP000079169    UP000005205    UP000092461    UP000095300    UP000008237    UP000268350    UP000001292    UP000009192    UP000000304    UP000027135    UP000095301    UP000002282    UP000008820    UP000001070    UP000008711    UP000007798    UP000007801    UP000001819    UP000008744    UP000069272    UP000000673    UP000075903    UP000076407    UP000075882    UP000007062    UP000075840    UP000075902    UP000002320    UP000075881    UP000075886    UP000078542    UP000075900    UP000015103    UP000069940    UP000249989    UP000215335    UP000002358    UP000009046    UP000078492    UP000075883    UP000078540    UP000279307    UP000053105    UP000053825    UP000075920    UP000078200    UP000192223    UP000000311    UP000007819    UP000019118    UP000030742    UP000075880    UP000076408    UP000000305    UP000076858    UP000007755    UP000078541    UP000092553    UP000076502   

PRIDE

Q1ZYJ6    Q9VD81   

Pfam

PF01096   TFIIS_C

Interpro

IPR012164   Rpa12/Rpb9/Rpc10/TFS        + More
IPR001222   Znf_TFIIS       
IPR034004   Zn_ribbon_RPA12_C       
IPR019761   DNA-dir_RNA_pol-M_15_CS       

CDD

cd10507  Zn-ribbon_RPA12

ProteinModelPortal

Q1ZYJ6   A0A2H1X1X9   A0A2A4JLT4   A0A212F0V8   A0A0N0PD94   A0A194QAA8   + More
A0A1E1W007   S4PSG7   A0A0L7LNR5   U5EQG9   A0A0T6AVL2   A0A0L0BXV6   A0A1W4VPS8   D6WBZ4   B4LWP3   A0A2P8YV40   Q9VD81   A0A2A3E768   A0A1L8DID1   A0A1S3DL81   A0A158NPQ1   A0A1B0CLC9   A0A1I8P607   E2C5M5   A0A3B0JKV5   A0A2M4AVZ5   B4HM44   B4K8D8   B4QZ91   A0A067R9I3   A0A1Q3F0P4   A0A1I8MNL4   B4PKV3   Q16SW6   B4JU97   Q16SW7   B3NZY6   W8CDU1   B4NHN6   A0A034WQP8   A0A1Y1MPW4   B3LVZ2   A0A1B6GXN3   Q29AR6   B4G606   A0A182FA85   A0A2M4C3S9   W5J1F5   A0A182US58   A0A182XIB1   A0A182LFE1   Q7PR45   A0A182HT96   A0A0K8WIW5   A0A182UF37   A0A2R7WFG3   A0A0A9Z5P1   B0WS60   A0A2M4CYM7   A0A182K3C4   A0A182QE25   A0A151IMU2   A0A182RYG2   A0A0N7Z8V9   R4G7X7   A0A336LXJ7   A0A182H0M9   A0A232FMC8   K7IXE8   A0A2M3ZJW8   A0A2M3ZD73   E0VBV6   A0A195EL19   A0A182MLP1   A0A195AT83   A0A3L8DAA5   A0A0V0GDY6   A0A023EI75   A0A0M8ZN31   A0A0L7R308   A0A069DP51   A0A182W2W8   A0A1B6LDY9   A0A1A9VIX5   A0A1W4WYX6   E2B0G0   J9JU77   A0A224XPQ2   N6UG87   A0A182IKI2   A0A2M3ZD77   A0A182Y779   E9GG94   A0A2S2P0X7   A0A0P6GYA4   F4W7I7   A0A195ESW4   A0A0M5J7M9   A0A0P6BV12   A0A154P238  

PDB

6HLS     E-value=4.23833e-12,     Score=165

KEGG

693115    K03000 DNA-directed RNA polymerase I subunit RPA12 | (RefSeq) Znrd1; transcription-associated zinc r

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0005730   GO:0006379   GO:0003899   GO:0003676   GO:0006351   GO:0008270   GO:0005736   GO:0006363   GO:0046872   GO:0016020   GO:0051103   GO:0005524   GO:0042555   GO:0048384  

Subcellular location

  

Length:

120

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02181

Exp number, first 60 AAs:

0.02106

Total prob of N-in:

0.10222

outside

1  -  120

 

 

Pi

224.270474

Theta

206.167034

Tajima's D

0.245306

CLR

0

CSRT

0.437178141092945

Interpretation

Uncertain