Silkworm Genome Informatics Database

Gene

KWMTBOMO03550

Pre Gene Modal

BGIBMGA006289

Annotation

putative_chromobox-like_protein_1_[Danaus_plexippus]

Location

Bomo_Chr6(-):11748995-11754539 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.356 Nuclear Reliability : 2.115

CDS

ATGGATGAATCACTAGAAGCAGAGCTATCGTTCGCAGAAAATGCTCAACCGGCACAACCCATGGAGACTAGTCAGACGGACAACACTTTAGCTCAACCTGGAACTGTTGTTCCCGGCGGGAAACCAGAAGAATTTTCTGTGGAGAAAATACTTGACAGAAGGGTTAAAAACGGGAAAGTCGAATATCTGTTAAAGTGGAAAGGGTACTCTAATGAAGACAACACTTGGGAACCAGAAGACAACCTTGACTGTCCTGAGCTGATATCAGCATATGAAGAAGCAAGAATGAAAAAAGAGAGAGAAGCTGCGCAAGTTGTACCTGATATATCAGAAGAAAACTTAGCAACCAGGAAAAGATCTAAAAGAGGATCCAAAAAGAAAATTGAGGAAATTGAAAAGCCTAGAGGTCTTGCCCGTGGCTTGGAACCTGAGAAGATTTTGGCTGGCCAGCTATTCCATGGTACACTATTTTTCTTGGTGAAATGGCAGAATTGTCTTGAAATGGATGTTGTACCAGGACACAATTTAGGCGAAGCATTTCCGGAATTTGTTATTGATTACTATGAGAAATGTGCACCTTTCAGTGTTAGACATAAGGACATGAAAGTTTTTAGAGAAGCACCTGAGTTACCTTCAGACGATCCAACTCAGCCTGAAATGGAAACTTCTACCAAAGTGGCTGAAGACACATTAACTAACAGTGAAGCAGTTGAATCGCGAGTAGAACCTCCGTCTTCTGTGCCAGTTGCTGAGACGGCGTCTCCAACCTTAGAAGTGCCTGTCAACTGA

Protein

MDESLEAELSFAENAQPAQPMETSQTDNTLAQPGTVVPGGKPEEFSVEKILDRRVKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARMKKEREAAQVVPDISEENLATRKRSKRGSKKKIEEIEKPRGLARGLEPEKILAGQLFHGTLFFLVKWQNCLEMDVVPGHNLGEAFPEFVIDYYEKCAPFSVRHKDMKVFREAPELPSDDPTQPEMETSTKVAEDTLTNSEAVESRVEPPSSVPVAETASPTLEVPVN

Uniprot

A0A212F0T1 A0A2H1X1R3 A0A194QA59 A0A2A4J872 A0A1E1W5C7 A0A1E1W8C0 + More

Pubmed

22118469 26354079

EMBL

AGBW02011024 OWR47358.1 ODYU01012776 SOQ59249.1 KQ459249 KPJ02413.1 + More
NWSH01002602 PCG67878.1 GDQN01008905 JAT82149.1 GDQN01007867 GDQN01006685 JAT83187.1 JAT84369.1

Proteomes

UP000007151 UP000053268 UP000218220

Pfam

PF00385 Chromo + More
PF01393 Chromo_shadow

Interpro

IPR008251   Chromo_shadow_dom        + More
IPR000953   Chromo/chromo_shadow_dom
IPR023779   Chromodomain_CS
IPR023780   Chromo_domain
IPR017984   Chromo_dom_subgr
IPR016197   Chromo-like_dom_sf

SUPFAM

SSF54160 SSF54160

CDD

cd00024 CHROMO

ProteinModelPortal

A0A212F0T1 A0A2H1X1R3 A0A194QA59 A0A2A4J872 A0A1E1W5C7 A0A1E1W8C0 + More

PDB

3TZD E-value=1.12217e-15, Score=201

KEGG

101738835 K11586 chromobox protein 3 | (RefSeq) chromobox protein homolog 1-like

GO

GO:0045892 GO:0005719 GO:0005634 GO:0008255 GO:0018990 GO:0016020 GO:0051103 GO:0005524 GO:0008270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

262

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00375

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00964

outside

1 - 262

Pi

179.726765

Theta

154.828693

Tajima's D

-0.634195

CLR

15.626234

CSRT

0.214839258037098

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics