Gene

KWMTBOMO03541

Pre Gene Modal

BGIBMGA006252

Annotation

PREDICTED:_suppressor_of_lurcher_protein_1-like_[Amyelois_transitella]

Location

Bomo_Chr6(+):11243565-11260230      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.225 Nuclear   Reliability : 1.23 PlasmaMembrane   Reliability : 1.383

CDS

ATGACTAGATGCGTTCATGGCGACTACATCAAGGTTTATTCTGAAGGGATCCACGGGCCTGGTCCTCCTGGCATCAATGAGTATTCTGCCTGGTCGAGGATAATTTGCGGAAGCAGAGTCGATGCACCTCCGGCACTGTATTCCCACGGACCTGTTCTAGTTTTAGAACTACACACGGGAACAAAAGCATCAAATGCCACTGGATTTGTCGGGACGTATAGGTTTATTGATAGAAGAAACTTTGAAACGGACGGCATCCGAGTCCCGGACACGTGGTGCGACTACGTGTTCAACTCGCAGCCGAATAAACCGGTACACGGTCGCCTATACAGTCCGAGATACCCATCGAGCTACCCCAGTAATATGCGGTGTAACTATCATTTTAATGCCAGACAAAATGAAAGGATCAAACTAGTTTTTGACGAATCTTTTCTTCAGAAAGGAGACATGAGTTGCCTGAACCGGGCGGATATAATAAAAGTGTTCGATGGTCGAACGTCAACCGCACCTGTACTCGCGATGCTGTGCAACGAGCTTATTGGTTTTGAAATACTATCGACAGGGCCCGAGCTACTGGTGCAATTTACGGCGAATTCCGATACACCAGGCCAGGGTTTCAAGGCCAGCTATCAATTTCAAATGCAATATAATTCTAATACAGATGGGGACATTAATAAAAAATCAAGCACGGCCGACGCAATATCCGGATTGGGCCCAGCTGTGAGTGCTGCCACATCATCGTGCCATCAAGTATTCAGCAGCGACAAGAGCAAAAGCGGCAAATTAACATCTCCGTTGTACCCCTCGCCGTATCCACAGAAGACGCATTGTCATTATGACTTCATGGCGAGGGGAAGGGAACGCGTTAGACTCGTGTTCGAGGATTTCAGCTTACAACGAATAAGCGACAGTGCTATAGATTGCGAAAGCTCGGATTCCATAGATGTATTTTTGTACGTGGATGGGCGGCTTGAGAAGATGGCGTCATTTTGCAACGACACGCCAAAACCAATAATGTCGAATGGACCAAAGCTATCCATCGAATTCAGAGGGATTTTCTCTTCGAGGAACTCCAGGGGTTTCAAGATATCGTATTATTTTGTCGAAGACTACGCTATTTCAACGGGAATTCAGCTACAGGAGTTTCCGTGTGCCTTCGTATACAATAGCAGCGAACGGTCCAAGGGTGTTGTGACGTCACCGAATTATCCCGGCTTCTATCCTCGTGATACCGAATGCAATTACTTCTTCTACGGCCACGAAAATGAAAGAGTTCTCCTACACTTCACCTACTTCGATGTTGAAGGCGTAATGCCATGCGAGGCGGTCTCGGCAAGCGACTACGTACAATTTTCAAGCCAAATGATAGACTCAAAAAGTCAGCGCTACTGTGGCCAGCTGAGGGAGCTTCAAGTTACGTCGGATAAAAACTTCCTGAGGATCACATTTAGATCAAACGATAGGCTAGACGGGACCGGCTTCAAATGTGATTATATTTTCTTGAGAGATTCGGAGATGCACAGCATGACAATGCCAGATTCTCATGACAAGGGTACAAATATTCGGATAACAAAATTGCTATTGTTAATTTGTTTTGAGTTCCGAACGATAGCATTCAGATAA

Protein

MTRCVHGDYIKVYSEGIHGPGPPGINEYSAWSRIICGSRVDAPPALYSHGPVLVLELHTGTKASNATGFVGTYRFIDRRNFETDGIRVPDTWCDYVFNSQPNKPVHGRLYSPRYPSSYPSNMRCNYHFNARQNERIKLVFDESFLQKGDMSCLNRADIIKVFDGRTSTAPVLAMLCNELIGFEILSTGPELLVQFTANSDTPGQGFKASYQFQMQYNSNTDGDINKKSSTADAISGLGPAVSAATSSCHQVFSSDKSKSGKLTSPLYPSPYPQKTHCHYDFMARGRERVRLVFEDFSLQRISDSAIDCESSDSIDVFLYVDGRLEKMASFCNDTPKPIMSNGPKLSIEFRGIFSSRNSRGFKISYYFVEDYAISTGIQLQEFPCAFVYNSSERSKGVVTSPNYPGFYPRDTECNYFFYGHENERVLLHFTYFDVEGVMPCEAVSASDYVQFSSQMIDSKSQRYCGQLRELQVTSDKNFLRITFRSNDRLDGTGFKCDYIFLRDSEMHSMTMPDSHDKGTNIRITKLLLLICFEFRTIAFR

Uniprot

A0A2W1BKR9   A0A212EM27   A0A194QRP3   A0A194QAB4   A0A2H1VUY5   A0A0L7LN85   + More
A0A139WB16   A0A0T6B3L9   A0A088AES6   T1JPZ7   T1JI54   A0A226E0H2   A0A3Q0J253   A0A0B5G2C0   A0A0R3NFG4   A0A3B0JID6   A0A2T7P5R4   B4NBE2   A0A1W4UAH6   B4LXG7   V4A6R9   Q4V4F1   Q15KK8   A8JQY3   A0A1I8PA75   A0A1I8PAC8   B4PNS2   B4KAX9   Q4V495  

Pubmed

28756777    22118469    26354079    26227816    18362917    19820115    + More
15632085    17994087    23254933    10731132    12537568    12537572    12537573    12537574    16110336    16818875    17569856    17569867    26109357    26109356    17550304   

EMBL

KZ149987    PZC75672.1    AGBW02013948    OWR42527.1    KQ461181    KPJ07650.1    + More
KQ459249    KPJ02417.1    ODYU01004586    SOQ44618.1    JTDY01000474    KOB77013.1    KQ971374    KYB25138.1    LJIG01015992    KRT81938.1    CAEY01000435    CAEY01000436    JH431584    LNIX01000008    OXA51222.1    KP067952    AJF11714.1    CM000070    KRS99808.1    OUUW01000005    SPP80483.1    PZQS01000006    PVD28760.1    CH964232    EDW81106.2    CH940650    EDW67845.2    KB202619    ESO88956.1    BT023055    AAY55471.1    DQ015970    AE014297    AAY81927.1    AHN57304.1    ABW08648.1    CM000160    EDW97087.2    CH933806    EDW14657.2    BT023111    AAY55527.1    ABW08649.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000037510    UP000007266    UP000005203    + More
UP000015104    UP000198287    UP000079169    UP000001819    UP000268350    UP000245119    UP000007798    UP000192221    UP000008792    UP000030746    UP000000803    UP000095300    UP000002282    UP000009192   

PRIDE

Q4V4F1    Q15KK8    Q4V495   

Pfam

PF00431   CUB        + More
PF01391   Collagen
PF01410   COLFI

Interpro

IPR000859   CUB_dom        + More
IPR035914   Sperma_CUB_dom_sf       
IPR008160   Collagen       
IPR000885   Fib_collagen_C       

SUPFAM

SSF49854   SSF49854       

Gene 3D

2.60.120.290    

CDD

cd00041  CUB

ProteinModelPortal

A0A2W1BKR9   A0A212EM27   A0A194QRP3   A0A194QAB4   A0A2H1VUY5   A0A0L7LN85   + More
A0A139WB16   A0A0T6B3L9   A0A088AES6   T1JPZ7   T1JI54   A0A226E0H2   A0A3Q0J253   A0A0B5G2C0   A0A0R3NFG4   A0A3B0JID6   A0A2T7P5R4   B4NBE2   A0A1W4UAH6   B4LXG7   V4A6R9   Q4V4F1   Q15KK8   A8JQY3   A0A1I8PA75   A0A1I8PAC8   B4PNS2   B4KAX9   Q4V495  

PDB

6GJE     E-value=1.77158e-16,     Score=211

KEGG

105841568    no KO assigned | (RefSeq) suppressor of lurcher protein 1-like

GO

GO:0005201   GO:0005886   GO:0016021   GO:0016491  

Length:

540

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0720799999999999

Exp number, first 60 AAs:

0.00114

Total prob of N-in:

0.00605

outside

1  -  540

 

 

Pi

252.722462

Theta

179.58104

Tajima's D

1.415806

CLR

0.322855

CSRT

0.766611669416529

Interpretation

Uncertain