Gene

KWMTBOMO03540

Pre Gene Modal

BGIBMGA005709

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr6(-):11215936-11219964      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Nuclear   Reliability : 3.005

CDS

ATGGACGCCGTTCCAATATGGCGGACTAGAGCGGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAAGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTGGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTCCGGGTCAGTGGCGTGTGGTTCCTGTGCACTTCAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGACGCACGACAGCGTGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACTGTGTCTCACGAGACACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGAAAAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTAAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGGTTCCAGCACGGTTTCGTGCTTGAAAACATCTCGGATGACAGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTTAGGCTACCGGCGGATGTGCCCAAGGCATACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTAAGAAACTGCGGTGGGCCTGGAAACAGCTTCGCAGGTTCAGCCGTGTTGACTCCACAACGCAACGACCATCAGTGCGCTTGTTTTGGCGAGAAAATCTGCACGCATCTGTTGATCGCGAAGTTCGCGAATCCACACGCACCCCGACATCCACAAAGTGGATTAGGGCGCGATGCGCGCAGATAACCGGACGGGACTTCGTGCAGTTCGTGCACACTCATATCAACGCCCTCCCATCCCGCATTCGCGGATCGAGAGGGCGTAGAGGTGGGGGTGAGTCTTCGTTGACCTGCCGTGCTGGTTGCAAGGTTAGGGAGACGACGGTTCACATCCTACAACAGTGTCACAGAACACACGGCGGCCGGATTCTACGACACAACAAGATTGTATCTTTCGTGGCGAAAGCCATGGAAGAGAACAAGTGGACGGTTGAGCTGGAGCCGAGGCTACGAACATCGGTTGGTCTCCGTAAGCCGGATATTATCGCCTCCAGGGATGGTGTCGGAGTGATCGTGGACGTGCAGGTGGTCTCGGGCCAGCGATCGCTTGACGAGCTCCACCGTGAGAAACGTAATAAATACGGGAATCACGGGGAGCTGGTTGAGTTGGTCGCAGGTAGACTAAGACTTCCGAAAGCTGAGTGCGTGCGAGCCACTTCGTGTACTGTATCTTGGAGGGGAGTTTGGAGCCTGACTTCTTATAAGGAGTTAAGGTCCATAATCGGGCTTCGGGAACCGACACTACAGATCGTTCCGATATTGGCGTTGAGAGGATCGCACATGAACTGGACCAGGTTCAATCAGATGACGTCCGTCATGGGGGGCGGCGTTGCAACAGAAACACCTGAGCAACATGATACCAGGTTAATAGCACAACGTGAGAGACAAAGGCAGCTGGTAGAGTCAGAAACACCTGAGCGTCATGAGTGCAGGCTAGCATCACAACGTGACAGACGAAGAGAGCTAATAGCGTCAGAAACACCCGAGCGTCATGAGTCCAGGCTAGCATCACAACGTGACAGACAAAGAGAGTTGTTAGCATCAGAAACATCTGAGCGTCATGAGTCTAGGCTAGCACCACAACGTGACAGACGAAGAGAGCTAATAGCGTCAGAAACACTTGAGCGTCATGAGTCCAGGCTAAGATTACAACGTAACAGACAAATAGAGCTATTAGCGTCAGAAACACCTGAGCAACATGAGGCCAGGTTAACAGGACGGCGTGAGAGACGAAAGGAGTTAGAAGCTTCAGAAACACCTGAGCAACGCCACGACAGGTTAAATAGCCAACGTGAGCGTGCACAGCAACGCAGAGCTGAAAATCATGTACAAGCGTTTGAAAATGCCATTAACACATCGTGTATACACGTTTGTGACATTTGCACGAAGCATTGA

Protein

MDAVPIWRTRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRPGQWRVVPVHFKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHETLVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLENISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWRENLHASVDREVRESTRTPTSTKWIRARCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCRAGCKVRETTVHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPRLRTSVGLRKPDIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGELVELVAGRLRLPKAECVRATSCTVSWRGVWSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSVMGGGVATETPEQHDTRLIAQRERQRQLVESETPERHECRLASQRDRRRELIASETPERHESRLASQRDRQRELLASETSERHESRLAPQRDRRRELIASETLERHESRLRLQRNRQIELLASETPEQHEARLTGRRERRKELEASETPEQRHDRLNSQRERAQQRRAENHVQAFENAINTSCIHVCDICTKH

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0C9QX33   A0A0J7KIZ7   + More
K7JR53   A0A139W9T2   A0A0J7KIJ3   Q03278   K7JCX5   A0A2S2Q7J7   B8Y0J4   A0A1A9VZG3   A0A023EXT5   P16423   A0A023EX96   A0A1Z5LEY2   A0A1E1XIZ0   A0A131YXA3   K7JPM5   A0A0R4WRV8   A0A293LGQ3   L7M1A0   A0A224XHH5   A0A131Z2I9   K7JWL4   O44323   K7JX42   A0A096XIE1   A0A0J7N6L9   O44319   A0A1E1X328   A0A1E1X218   A0A293LBM6   A0A1Z5L9B1   Q76IP0   O44316   C6F3W3   A0A077B0I4   A0A293M998   Q76IP1   I7AEJ4   Q03279   I7A3V0   A0A139W963   J9M3R0   A0A0A9VQ34   A0A0K8S7M2   A0A146KWA5   I7BCK2   A0A183A234   Q76IN9   A0A2R7WW67   A0A0K8TDX3   I7B001   C7C209   A0A075A624   W5NKD0   A0A3B5M253   Q03274   A0A3B1JJF5   A0A1V1H6Q5   W5N206   A0A2Z5WP53   A0A0V0REB5   A0A0V1C720  

Pubmed

2439905    14999096    25474469    20075255    18362917    19820115    + More
8383793    19350401    1690812    28528879    28503490    26830274    25576852    9515960    10331276    12949131    9927458    22564473    25401762    26823975    1849649    25329095    27662593   

EMBL

M16558    AAB59214.1    AB076841    BAC01114.1    AF436853    AAQ04479.1    + More
GBBI01004849    JAC13863.1    GBYB01008309    JAG78076.1    LBMM01006940    KMQ90176.1    AAZX01002322    KQ971997    KYB24671.1    LBMM01007077    KMQ90064.1    L00950    AAZX01010802    AAZX01015897    GGMS01004512    MBY73715.1    FJ461304    ACJ71597.1    GBBI01004906    JAC13806.1    X51967    GBBI01004905    JAC13807.1    GFJQ02001120    JAW05850.1    GFAC01000014    JAT99174.1    GEDV01005279    JAP83278.1    AAZX01024756    AAZX01024918    JQ082370    AFM44926.1    GFWV01002964    MAA27694.1    GACK01007407    JAA57627.1    GFTR01008394    JAW08032.1    GEDV01003881    JAP84676.1    AAZX01023287    AF015819    AAC34906.1    AAZX01023288    KF925878    AHN53448.1    LBMM01009160    KMQ88340.1    AF015815    AAC34903.1    GFAC01005513    JAT93675.1    GFAC01005869    JAT93319.1    GFWV01001114    MAA25844.1    GFJQ02003336    JAW03634.1    AB097122    BAC82590.1    AF015685    AAB94032.1    EU854578    ACJ46647.1    KJ958674    AIL01110.1    GFWV01012635    MAA37364.1    AB097121    BAC82589.1    JN937617    AFO19996.1    L00951    JN937619    AFO19998.1    KQ972640    KXZ75830.1    ABLF02003433    GBHO01045037    GBHO01045036    JAF98566.1    JAF98567.1    GBRD01016678    JAG49149.1    GDHC01017848    JAQ00781.1    JN937618    AFO19997.1    UZAN01004728    VDP32110.1    AB097123    BAC82591.1    KK855758    PTY23787.1    GBRD01002048    JAG63773.1    JN937616    AFO19995.1    FN356223    CAX83712.1    KL596651    KER31070.1    AHAT01035183    L00947    LC155026    BAX24488.1    AHAT01017236    AHAT01017237    LC349444    BBC20536.1    JYDL01000257    KRX12851.1    JYDI01000477    KRY44798.1   

Proteomes

UP000036403    UP000002358    UP000007266    UP000091820    UP000007819    UP000050740    + More
UP000018468    UP000261380    UP000018467    UP000054630    UP000054653   

PRIDE

V9H052    Q8MY64    Q5K671    Q03278    P16423    Q03274    + More

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2
PF08356   EF_assoc_2
PF08355   EF_assoc_1
PF00071   Ras
PF13202   EF-hand_5
PF00249   Myb_DNA-binding

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR013567   EF_hand_assoc_2       
IPR018247   EF_Hand_1_Ca_BS       
IPR020860   MIRO_dom       
IPR013566   EF_hand_assoc_1       
IPR036236   Znf_C2H2_sf       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR001005   SANT/Myb       

SUPFAM

SSF57667   SSF57667        + More
SSF52540   SSF52540       
SSF47473   SSF47473       

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0C9QX33   A0A0J7KIZ7   + More
K7JR53   A0A139W9T2   A0A0J7KIJ3   Q03278   K7JCX5   A0A2S2Q7J7   B8Y0J4   A0A1A9VZG3   A0A023EXT5   P16423   A0A023EX96   A0A1Z5LEY2   A0A1E1XIZ0   A0A131YXA3   K7JPM5   A0A0R4WRV8   A0A293LGQ3   L7M1A0   A0A224XHH5   A0A131Z2I9   K7JWL4   O44323   K7JX42   A0A096XIE1   A0A0J7N6L9   O44319   A0A1E1X328   A0A1E1X218   A0A293LBM6   A0A1Z5L9B1   Q76IP0   O44316   C6F3W3   A0A077B0I4   A0A293M998   Q76IP1   I7AEJ4   Q03279   I7A3V0   A0A139W963   J9M3R0   A0A0A9VQ34   A0A0K8S7M2   A0A146KWA5   I7BCK2   A0A183A234   Q76IN9   A0A2R7WW67   A0A0K8TDX3   I7B001   C7C209   A0A075A624   W5NKD0   A0A3B5M253   Q03274   A0A3B1JJF5   A0A1V1H6Q5   W5N206   A0A2Z5WP53   A0A0V0REB5   A0A0V1C720  

KEGG

102466437    no KO assigned | (RefSeq) Mir3342, bmo-mir-3342; microRNA 3342

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190   GO:0003924   GO:0016021   GO:0005509   GO:0005525  

Length:

952

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00757999999999999

Exp number, first 60 AAs:

0.00075

Total prob of N-in:

0.00036

outside

1  -  952

 

 

Pi

16.169337

Theta

18.998678

Tajima's D

1.203107

CLR

0.044842

CSRT

0.725213739313034

Interpretation

Uncertain