Gene

KWMTBOMO03539

Pre Gene Modal

BGIBMGA006248

Annotation

PREDICTED:_cubilin-like_[Bombyx_mori]

Location

Bomo_Chr6(+):11204295-11210421      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.256

CDS

ATGTTGGGATTGATAATGATAATTATACAGACGTCGACGACCTTAATCCTGGTGTTTCATTTATCCCTCCACACGGTTGACGAAGGACACGCCATAAATCCAAGTTGTGAGTGCATCCGCTTCACTTCAACATACGGCAAAGAGCGCGGAACATTCAGCAGTCCCGACTACCCGCGTCCGTATCCGCCGCACCTCTCCTGCGTACTCTACACGTTCATCGCTGCACCACACGAAATCGTGGAACTCATCTTCACGGACTTCGATATCTACAAGGAGCATCTTGACTGA

Protein

MLGLIMIIIQTSTTLILVFHLSLHTVDEGHAINPSCECIRFTSTYGKERGTFSSPDYPRPYPPHLSCVLYTFIAAPHEIVELIFTDFDIYKEHLD

Uniprot

A0A2W1BFU4   A0A194QRP3   A0A194QAB4   A0A212EM27   A0A212FJC1   A0A194QQ49   + More
A0A194QAC4   H9J9Q5   A0A2W1BGU0   A0A0T6B3L9   A0A2H1VUT9   A0A1W4WTI0   A0A139WB16   K7JYN6   A0A2C9JM76   A0A0B5G2C0   A0A164XQD0   A0A0P5YSN9   A0A0P5YSH4   A0A0P5YRY5   A0A0P5Z782   A0A0P5YSP1   A0A0N8A764   A0A0P5SNR6   A0A0P5GIX3   A0A0P5E9B8   A0A0N8CFA1   A0A0P4X3Q4   A0A0P4YFN6   A0A0P6ANU1   A0A0P5Y1U5   A0A0P6AKC2   A0A1S3K7B3   A0A267GPP7   A0A1I8GSU1   E5SUC3   A0A0V0ZRF4   A0A0V1H364   A0A0V0RKG1   A0A0V1MEV4   A0A0V0RKT4   A0A0V0VWS7   A0A0V1NSS2   A0A0V1L1V2  

Pubmed

28756777    26354079    22118469    19121390    18362917    19820115    + More
20075255    15562597    26392545   

EMBL

KZ150221    PZC72097.1    KQ461181    KPJ07650.1    KQ459249    KPJ02417.1    + More
AGBW02013948    OWR42527.1    AGBW02008284    OWR53832.1    KPJ07638.1    KPJ02427.1    BABH01034030    KZ150227    PZC72036.1    LJIG01015992    KRT81938.1    ODYU01004585    SOQ44611.1    KQ971374    KYB25138.1    AAZX01000458    AAZX01012136    AAZX01014277    AAZX01015963    KP067952    AJF11714.1    LRGB01000944    KZS14460.1    GDIP01053938    JAM49777.1    GDIP01053939    JAM49776.1    GDIP01053937    JAM49778.1    GDIP01048133    JAM55582.1    GDIP01053936    JAM49779.1    GDIP01175825    JAJ47577.1    GDIP01137438    JAL66276.1    GDIQ01239881    JAK11844.1    GDIP01146429    JAJ76973.1    GDIP01137439    JAL66275.1    GDIP01249765    JAI73636.1    GDIP01228271    JAI95130.1    GDIP01040292    JAM63423.1    GDIP01065774    JAM37941.1    GDIP01028198    JAM75517.1    NIVC01000240    PAA87262.1    JYDQ01000101    KRY15131.1    JYDP01000146    KRZ05101.1    JYDL01000147    KRX14887.1    JYDO01000119    KRZ70165.1    KRX14888.1    JYDN01000003    KRX67914.1    JYDM01000107    KRZ87024.1    JYDW01000161    KRZ53545.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000005204    UP000192223    UP000007266    + More
UP000002358    UP000076420    UP000076858    UP000085678    UP000215902    UP000095280    UP000054783    UP000055024    UP000054630    UP000054843    UP000054681    UP000054924    UP000054721   

PRIDE

H9J9Q5   

Pfam

PF00431   CUB        + More
PF01391   Collagen
PF01410   COLFI
PF00057   Ldl_recept_a

Interpro

IPR000859   CUB_dom        + More
IPR035914   Sperma_CUB_dom_sf       
IPR008160   Collagen       
IPR000885   Fib_collagen_C       
IPR036055   LDL_receptor-like_sf       
IPR002172   LDrepeatLR_classA_rpt       

SUPFAM

SSF49854   SSF49854        + More
SSF57424   SSF57424       

Gene 3D

2.60.120.290     4.10.400.10    

CDD

cd00041  CUB
cd00112  LDLa

ProteinModelPortal

A0A2W1BFU4   A0A194QRP3   A0A194QAB4   A0A212EM27   A0A212FJC1   A0A194QQ49   + More
A0A194QAC4   H9J9Q5   A0A2W1BGU0   A0A0T6B3L9   A0A2H1VUT9   A0A1W4WTI0   A0A139WB16   K7JYN6   A0A2C9JM76   A0A0B5G2C0   A0A164XQD0   A0A0P5YSN9   A0A0P5YSH4   A0A0P5YRY5   A0A0P5Z782   A0A0P5YSP1   A0A0N8A764   A0A0P5SNR6   A0A0P5GIX3   A0A0P5E9B8   A0A0N8CFA1   A0A0P4X3Q4   A0A0P4YFN6   A0A0P6ANU1   A0A0P5Y1U5   A0A0P6AKC2   A0A1S3K7B3   A0A267GPP7   A0A1I8GSU1   E5SUC3   A0A0V0ZRF4   A0A0V1H364   A0A0V0RKG1   A0A0V1MEV4   A0A0V0RKT4   A0A0V0VWS7   A0A0V1NSS2   A0A0V1L1V2  

PDB

6FZW     E-value=0.00196216,     Score=91

KEGG

101742203    no KO assigned | (RefSeq) cubilin-like

GO

GO:0005201   GO:0005886   GO:0016021  

Length:

95

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.52779

Exp number, first 60 AAs:

8.77015

Total prob of N-in:

0.19718

outside

1  -  95

 

 

Pi

202.03959

Theta

183.248614

Tajima's D

1.014636

CLR

0

CSRT

0.663266836658167

Interpretation

Uncertain