Gene

KWMTBOMO03527

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):10719994-10722544      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.333

CDS

ATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCACCCTCCCATAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAATAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTAAACGGAGCGTACGTGGTGAAGAGAGACACACCATCGACCCCCCCGAATATATTTGAATCATTTCAAACAAACATGGACATGTTCAGGAAGTGCTTGGATTTAACGCTGGCCAAATCGGTGGACGATGTTAACGTGCATCAACTGAAACCTGTCTTTAATGTTATCGGTGATCAGATTAATAGATTTTCTAAAGCGTTCGAAGATTTGACCGCGAAAAGTACTACAACACAGGAATCGATTTGGGCGTAG

Protein

MRALQRDVKSRIAEVRDARWSDFLEGLAPSHRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELIDSEVERRASLPPSDALPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVNGAYVVKRDTPSTPPNIFESFQTNMDMFRKCLDLTLAKSVDDVNVHQLKPVFNVIGDQINRFSKAFEDLTAKSTTTQESIWA

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   A0A1Y1NA23   A0A2S2Q352   + More
A0A1B6J5Z9   A0A2S2PEZ9   A0A2S2Q5V3   A0A2H8U0H5   X1WKS2   K7IN67   A0A087UB64   A0A2S2QEE0   A0A2S2NPT6   A0A2S2R7N0   J9KLB1   A0A2L2YNG9   A0A2L2YN79   A0A3N5Z7I3   A0A2S2N6C8   A0A2S2N629   A0A2S2PA10   A0A224XI99   T1ID59   A0A2S2PBB4   A0A023F700   A0A2J7R7D0   Q07995   J9K7I4   A0A2S2RAN7   A0A224X6U5   X1WVF0  

Pubmed

10333566    26354079    28004739    20075255    26561354    30086797    + More
25474469    8387152   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    GEZM01008457    JAV94772.1    GGMS01002955    MBY72158.1    GECU01013097    JAS94609.1    GGMR01015412    MBY28031.1    GGMS01003914    MBY73117.1    GFXV01007093    MBW18898.1    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    KK119069    KFM74603.1    GGMS01006359    MBY75562.1    GGMR01006581    MBY19200.1    GGMS01016818    MBY86021.1    ABLF02040174    ABLF02040183    ABLF02055266    IAAA01035748    LAA09609.1    IAAA01035749    LAA09611.1    RPOV01000134    RPJ78669.1    GGMR01000086    MBY12705.1    GGMR01000005    MBY12624.1    GGMR01013409    MBY26028.1    GFTR01008256    JAW08170.1    ACPB03027378    GGMR01014053    MBY26672.1    GBBI01001699    JAC17013.1    NEVH01006736    PNF36716.1    S59870    AAB26437.2    ABLF02017543    ABLF02017549    ABLF02017551    ABLF02021996    GGMS01017914    MBY87117.1    GFTR01008251    JAW08175.1    ABLF02003375    ABLF02032497   

Proteomes

UP000053268    UP000007819    UP000002358    UP000054359    UP000015103    UP000235965    + More

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03564   DUF1759
PF18701   DUF5641
PF00665   rve
PF05380   Peptidase_A17
PF17921   Integrase_H2C2
PF05585   DUF1758

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
IPR040676   DUF5641       
IPR008737   Peptidase_asp_put       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   A0A1Y1NA23   A0A2S2Q352   + More
A0A1B6J5Z9   A0A2S2PEZ9   A0A2S2Q5V3   A0A2H8U0H5   X1WKS2   K7IN67   A0A087UB64   A0A2S2QEE0   A0A2S2NPT6   A0A2S2R7N0   J9KLB1   A0A2L2YNG9   A0A2L2YN79   A0A3N5Z7I3   A0A2S2N6C8   A0A2S2N629   A0A2S2PA10   A0A224XI99   T1ID59   A0A2S2PBB4   A0A023F700   A0A2J7R7D0   Q07995   J9K7I4   A0A2S2RAN7   A0A224X6U5   X1WVF0  

KEGG

101739396    no KO assigned | (RefSeq) uncharacterized LOC101739396

GO

GO:0003964   GO:0004519   GO:0003676   GO:0015074  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

16.58744

Exp number, first 60 AAs:

0.0192

Total prob of N-in:

0.34427

outside

1  -  250

 

 

Pi

2.928025

Theta

35.057778

Tajima's D

-1.053662

CLR

0.348392

CSRT

0.127193640317984

Interpretation

Uncertain