Gene

KWMTBOMO03518  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006242

Annotation

putative_peptidyl-tRNA_hydrolase_PTRHD1_[Operophtera_brumata]

Location

Bomo_Chr6(-):10371782-10373354      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.242 Extracellular   Reliability : 1.222 Mitochondrial   Reliability : 1.172

CDS

ATGTCGAACGTAACTGTGCAGTATATATTACTCCGTAGTGATTTATTAAAAGAATTTGGCTGGTCTATTGGGGCTCTTGTCGCTCAAGCATGCCACGCTTCTTCGGCAGTTATGCACATATATAAAGATGATGAACATACTATACAATATTTGAATGATTTAGATAATATGCACAAAGTTGTTTTAGAAGTGCCAAATGAAGAGTCACTAAGAAAGGTAGCTGAAAAATTAAAAGAAAACTCAATATTGCACAAATTGTGGATTGAGCAGCCTGAAAACATCCCTACCTGTTTAGCCATAAAGCCTTATCCCAAGGATGAAGTAAAAAAATATGTTGGCAAATTTAAATTATATAAGGACACATTATTAAAATCCAGTTAA

Protein

MSNVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGKFKLYKDTLLKSS

Uniprot

H9J9P9   A0A0L7K3N0   S4PWR1   A0A194QQ44   A0A194QA76   A0A212F7D3   + More
A0A2A4JJN4   A0A2W1BZE5   A0A0L7LQZ8   A0A2H1W082   A0A146LWJ8   A0A146LYL8   A0A1W4XI58   A0A2P8ZKR9   A0A2R7WNN9   A0A1B6J652   A0A034WSM2   A0A0K8VYC1   A0A1B6KYV2   A0A1I8N7S6   A0A0A1XC13   K7J7Q5   W8B341   B3M2M4   A0A2P6K3F3   B4PMZ1   E0VQF6   A0A2R5LEU0   A0A2L2Y0X9   D6WB97   C3ZSU5   A0A0L0BYD8   A0A0A9X9S3   T2MC58   A0A1A9VNW8   N6TTT3   A0A1D2MLH6   Q9VET3   A0A0C9PMW8   A0A1I8QDK1   A0A1W4UIY9   B4NBC0   D3TQ35   A0A1B0FBR3   A0A1A9Z520   B4IBT7   A0A1A9YSK9   A0A336MWK0   A0A1B0C401   B3P0I8   Q4V688   B4L6M4   E2ALM8   E2BEZ2   A0A3M6TGV8   A0A3B0K3B1   Q29B51   B4GZ33   A0A2J7PDM2   A0A069DVR4   A0A151JTZ2   F4WVS7   A0A3B3T1L5   A0A195DBV7   A0A0V0G8F6   A0A151IBS0   V4CK76   R4FNK6   A0A151I147   A0A158NMR1   A0A154P9J0   A0A2G8KPU6   Q5RIN6   B4M7L7   A0A3P8XH98   A0A1X7U6C0   A0A2T7PF17   A0A1B6E661   B4JNH2   A0A151X180   A0A026WMS5   A0A224Y296   A0A2T7PF35   B3S469   A0A067QI79   A0A1W4YLM0   A0A0P7WY35   A0A2D0T328   A0A369S5B4   A0A131YPV6   A0A087ZNB3   G3MN04   A0A0K8TRA1   V5HWE9   W4YHS1   A0A226EPF5   A0A0B6ZWM4   B7QEZ2   I3KF90   Q4T548  

Pubmed

19121390    26227816    23622113    26354079    22118469    28756777    + More
26823975    29403074    25348373    25315136    25830018    20075255    24495485    17994087    17550304    20566863    26561354    18362917    19820115    18563158    26108605    25401762    24065732    23537049    27289101    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20353571    20798317    30382153    15632085    26334808    21719571    29240929    23254933    21347285    29023486    23594743    25069045    24508170    30249741    18719581    24845553    30042472    26830274    22216098    26369729    25765539    25186727    15496914   

EMBL

BABH01034010    JTDY01012429    KOB52274.1    GAIX01006348    JAA86212.1    KQ461181    + More
KPJ07633.1    KQ459249    KPJ02433.1    AGBW02009892    OWR49628.1    NWSH01001337    PCG71623.1    KZ149899    PZC78627.1    JTDY01000289    KOB77877.1    ODYU01005552    SOQ46510.1    GDHC01007577    JAQ11052.1    GDHC01006893    JAQ11736.1    PYGN01000028    PSN57060.1    KK855059    PTY20600.1    GECU01013055    JAS94651.1    GAKP01001308    JAC57644.1    GDHF01008480    JAI43834.1    GEBQ01023365    JAT16612.1    GBXI01005802    JAD08490.1    AAZX01009307    GAMC01018849    JAB87706.1    CH902617    EDV42345.1    MWRG01032932    PRD20851.1    CM000160    EDW97003.1    DS235418    EEB15612.1    GGLE01003924    MBY08050.1    IAAA01009077    LAA01657.1    KQ971312    EEZ98713.1    GG666674    EEN44497.1    JRES01001160    KNC25053.1    GBHO01029754    JAG13850.1    HAAD01003253    CDG69485.1    APGK01052662    KB741213    ENN72645.1    LJIJ01000903    ODM93847.1    AE014297    AAF55335.1    GBYB01002503    GBYB01002505    GBYB01014835    JAG72270.1    JAG72272.1    JAG84602.1    CH964232    EDW81084.2    EZ423537    ADD19813.1    CCAG010006242    CH480827    EDW44845.1    UFQT01002612    UFQT01002690    SSX33772.1    SSX33941.1    JXJN01025221    CH954181    EDV48814.1    BT022418    AAY54834.1    CH933812    EDW06020.2    GL440609    EFN65637.1    GL447885    EFN85757.1    RCHS01003631    RMX40454.1    OUUW01000005    SPP80459.1    CM000070    EAL27148.1    CH479198    EDW28051.1    NEVH01026386    PNF14436.1    GBGD01003510    JAC85379.1    KQ981936    KYN32758.1    GL888394    EGI61697.1    KQ981010    KYN10322.1    GECL01001819    JAP04305.1    KQ978078    KYM97182.1    KB200149    ESP02635.1    ACPB03014828    GAHY01001249    JAA76261.1    KQ976593    KYM79657.1    ADTU01020676    KQ434850    KZC08565.1    MRZV01000436    PIK50033.1    BX248390    CH940653    EDW62784.1    PZQS01000004    PVD32021.1    GEDC01003868    JAS33430.1    CH916371    EDV92265.1    KQ982588    KYQ54116.1    KK107152    QOIP01000007    EZA57228.1    RLU20030.1    GFTR01001867    JAW14559.1    PVD32017.1    DS985249    EDV22593.1    KK853353    KDR08228.1    JARO02004103    KPP69136.1    NOWV01000061    RDD42108.1    GEDV01007278    JAP81279.1    JO843255    AEO34872.1    GDAI01000947    JAI16656.1    GANP01005695    JAB78773.1    AAGJ04119365    LNIX01000003    OXA58701.1    HACG01025391    CEK72256.1    ABJB010262198    DS923024    EEC17414.1    AERX01042415    CAAE01009428    CAAE01015120    CAF91984.1    CAG12952.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000218220    + More
UP000192223    UP000245037    UP000095301    UP000002358    UP000007801    UP000002282    UP000009046    UP000007266    UP000001554    UP000037069    UP000078200    UP000019118    UP000094527    UP000000803    UP000095300    UP000192221    UP000007798    UP000092444    UP000092445    UP000001292    UP000092443    UP000092460    UP000008711    UP000009192    UP000000311    UP000008237    UP000275408    UP000268350    UP000001819    UP000008744    UP000235965    UP000078541    UP000007755    UP000261540    UP000078492    UP000078542    UP000030746    UP000015103    UP000078540    UP000005205    UP000076502    UP000230750    UP000000437    UP000008792    UP000265140    UP000007879    UP000245119    UP000001070    UP000075809    UP000053097    UP000279307    UP000009022    UP000027135    UP000192224    UP000034805    UP000221080    UP000253843    UP000005203    UP000007110    UP000198287    UP000001555    UP000005207    UP000007303   

PRIDE

H9J9P9    Q9VET3    Q4V688   

Pfam

PF01981   PTH2        + More
PF00076   RRM_1

Interpro

IPR002833   PTH2        + More
IPR042237   PTRHD1       
IPR023476   Pep_tRNA_hydro_II_dom_sf       
IPR034150   SF3B6_RRM       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       

SUPFAM

SSF102462   SSF102462        + More
SSF54928   SSF54928       

Gene 3D

3.40.1490.10     3.30.70.330    

CDD

cd12241  RRM_SF3B14

ProteinModelPortal

H9J9P9   A0A0L7K3N0   S4PWR1   A0A194QQ44   A0A194QA76   A0A212F7D3   + More
A0A2A4JJN4   A0A2W1BZE5   A0A0L7LQZ8   A0A2H1W082   A0A146LWJ8   A0A146LYL8   A0A1W4XI58   A0A2P8ZKR9   A0A2R7WNN9   A0A1B6J652   A0A034WSM2   A0A0K8VYC1   A0A1B6KYV2   A0A1I8N7S6   A0A0A1XC13   K7J7Q5   W8B341   B3M2M4   A0A2P6K3F3   B4PMZ1   E0VQF6   A0A2R5LEU0   A0A2L2Y0X9   D6WB97   C3ZSU5   A0A0L0BYD8   A0A0A9X9S3   T2MC58   A0A1A9VNW8   N6TTT3   A0A1D2MLH6   Q9VET3   A0A0C9PMW8   A0A1I8QDK1   A0A1W4UIY9   B4NBC0   D3TQ35   A0A1B0FBR3   A0A1A9Z520   B4IBT7   A0A1A9YSK9   A0A336MWK0   A0A1B0C401   B3P0I8   Q4V688   B4L6M4   E2ALM8   E2BEZ2   A0A3M6TGV8   A0A3B0K3B1   Q29B51   B4GZ33   A0A2J7PDM2   A0A069DVR4   A0A151JTZ2   F4WVS7   A0A3B3T1L5   A0A195DBV7   A0A0V0G8F6   A0A151IBS0   V4CK76   R4FNK6   A0A151I147   A0A158NMR1   A0A154P9J0   A0A2G8KPU6   Q5RIN6   B4M7L7   A0A3P8XH98   A0A1X7U6C0   A0A2T7PF17   A0A1B6E661   B4JNH2   A0A151X180   A0A026WMS5   A0A224Y296   A0A2T7PF35   B3S469   A0A067QI79   A0A1W4YLM0   A0A0P7WY35   A0A2D0T328   A0A369S5B4   A0A131YPV6   A0A087ZNB3   G3MN04   A0A0K8TRA1   V5HWE9   W4YHS1   A0A226EPF5   A0A0B6ZWM4   B7QEZ2   I3KF90   Q4T548  

KEGG

101738527    no KO assigned | (RefSeq) putative peptidyl-tRNA hydrolase PTRHD1

GO

GO:0004045   GO:0016021   GO:0003723   GO:0007165   GO:0008270   GO:0016020   GO:0004352   GO:0000287   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR46194  

Length:

126

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.64874

Exp number, first 60 AAs:

1.64874

Total prob of N-in:

0.26212

outside

1  -  126

 

 

Pi

324.67343

Theta

209.149927

Tajima's D

1.738905

CLR

0

CSRT

0.83840807959602

Interpretation

Uncertain