Gene

KWMTBOMO03513  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006243

Annotation

vacuolar_protein_sorting_4_[Bombyx_mori]

Location

Bomo_Chr6(-):10334786-10337504      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.602

CDS

ATGACATCATCAAATACCTTACAAAAAGCTATTGATCTTGTCACTAAGGCTACTGAAGAGGACAAGAACAAGAACTATGAAGAAGCATTACGTTTATATGAGCACGGTGTAGAGTATTTTCTTCATGCAGTAAAATATGAGGCCCAAGGTGAAAGGGCAAAAGAAAGCATTCGTGCAAAATGCCTTCAATATCTTGATAGAGCTGAAAAATTAAAGGAATATCTCAAAAAAGATCAAAAGAAAAAACCAGTAAAGGATGGGGAATCCAAAAGTGATGATAAGAAGAGTGATAGTGACAGTGATTCTGATGATCCAGAAAAGAAAAAACTACAAGGGAAACTTGAAGGAGCTATTGTGGTAGAGAAACCTCATGTGAAGTGGAGTGATGTAGCTGGTCTAGAAGCCGCTAAGGAAGCATTGAAAGAGGCTGTAATTCTACCAATAAAATTTCCACATTTGTTTACTGGCAAGAGAATACCATGGAAGGGCATCTTATTATTTGGACCCCCTGGTACTGGTAAGTCATACTTGGCAAAGGCTGTGGCTACTGAAGCAAACAATTCAACATTCTTCTCTGTTTCATCATCTGATCTGGTTTCTAAATGGCTGGGTGAGTCGGAGAAGTTGGTAAAGAACTTATTTGACCTTGCTCGACAACATAAACCGAGCATCATCTTTATTGATGAAATAGATTCACTTTGCTCTTCCCGTTCAGACAACGAATCTGAATCGGCTCGTAGGATCAAGACAGAATTCCTTGTTCAAATGCAAGGTGTTGGTAATGATATGGATGGCATTTTAGTTCTTGGTGCCACAAATATACCATGGGTCCTTGATTCTGCTATTCGAAGGCGTTTTGAGAAGCGTATTTACATTGCTCTGCCAGAAGAACATGCCCGTCTTGATATGTTTAAGTTGCATTTAGGCAACACAAGACATCAACTGTCTGAACAAGATATGAAATTATTAGCGGCTAAAAGTGAGGGATATTCCGGTGCGGATATCAGCATTGTTGTCCGTGATGCACTAATGCAACCTGTACGTAAAGTACAATCTGCCACACACTTTAAAAAAATATCTGGTCCGAGCCCAACTGATCCTAATGTTATTGTCAATGACCTTCTGACGCCATGTTCGCCTGGTGACCCAGGAGCTATAGAAATGACCTGGATCGATGTGCCTAGTGACAAACTTGGCGAGCCGCCAGTTACAATGTCAGACATGTTGAGATCTTTAGCTGTTTCGAAGCCTACTGTAAATGATGATGATATGGTAAAATTGAGGAAATTCATGGAAGACTTTGGTCAGGAAGGATAA

Protein

MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRAEKLKEYLKKDQKKKPVKDGESKSDDKKSDSDSDSDDPEKKKLQGKLEGAIVVEKPHVKWSDVAGLEAAKEALKEAVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARQHKPSIIFIDEIDSLCSSRSDNESESARRIKTEFLVQMQGVGNDMDGILVLGATNIPWVLDSAIRRRFEKRIYIALPEEHARLDMFKLHLGNTRHQLSEQDMKLLAAKSEGYSGADISIVVRDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG

Similarity

Belongs to the AAA ATPase family.

Uniprot

D0FH76   A0A194QAH5   A0A194QQ60   A0A0L7LRQ1   S4NP65   A0A212F7F0   + More
G3LZX7   A0A2W1BY93   A0A2A4JHS1   A0A1B6GRT2   A0A1B6JKV1   A0A1B0CEA3   E0VZT1   A0A2J7REM5   A0A1L8DW85   A0A224XCM5   A0A0V0G4F4   A0A0N9DVI3   D6WFH6   A0A023FCK6   A0A034VKV7   A0A0K8VZI4   A0A0A1WJB3   W8BH79   A0A1A9X821   A0A1B0ALW9   Q17GP3   A0A182J150   R4WDE1   A0A1A9ZLK4   A0A1A9WIK9   D3TM40   A0A182VJ69   A0A1I8NLR4   A0A1A9UU52   A0A1B0EXD1   Q7QFR0   A0A1L8EH31   N6TV25   A0A1B6DX78   A0A182MTG9   A0A023EUM0   A0A0A9YRA5   A0A182R227   A0A067RG64   A0A182VVI2   T1PLV6   A0A1Q3FEB8   A0A182PM57   A0A0L0CCI1   A0A182GN96   A0A182N225   A0A182N143   J9JLV9   B4L2B2   A0A182QVL6   A0A2H8TML2   B3MXW2   B4M6S6   A0A3B0J8P5   A0A2J7REN3   A0A0K8TSC7   Q29H77   B4R6Q7   A0A2S2PDY0   B4I6L5   B3NWZ3   Q9Y162   A0A3L8D966   B4Q2M1   A0A1W4UN90   A0A336MBZ7   B0XJH8   A0A1B6GL33   A0A1J1HHD7   B4NPI4   A0A182QKU6   A0A0M9A6X9   A0A088A3I7   A0A084VIV8   A0A0M3QYW5   A0A154NYG2   F6ZXA3   B2GUK1   K7J635   A0A182XYD4   A0A226NCZ1   E2BQY9   W5M4P7   A0A0L7QSE9   A0A1L8GF31   A0A226PG52   A0A1D5NYD8   W5JUK6   Q66IY7   A0A226EZ97   T1DQY8   A0A182FIV7   A0A2M4AAH7   A0A1V4K1I7  

Pubmed

19121390    23053938    26354079    26227816    23622113    22118469    + More
22072775    28756777    20566863    18362917    19820115    25474469    25348373    25830018    24495485    17510324    23691247    20353571    12364791    14747013    17210077    23537049    24945155    25401762    26823975    24845553    25315136    26108605    26483478    17994087    26369729    15632085    23185243    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30249741    17550304    24438588    20431018    20075255    25244985    20798317    27762356    24621616    15592404    20920257    23761445   

EMBL

BABH01034002    GQ995504    ACX69978.1    KQ459249    KPJ02434.1    KQ461181    + More
KPJ07632.1    JTDY01000289    KOB77876.1    GAIX01011969    JAA80591.1    AGBW02009892    OWR49629.1    JN584642    AEO21929.1    KZ149899    PZC78625.1    NWSH01001337    PCG71625.1    GECZ01004635    JAS65134.1    GECU01016213    GECU01007800    JAS91493.1    JAS99906.1    AJWK01008702    DS235854    EEB18887.1    NEVH01004959    PNF39285.1    GFDF01003390    JAV10694.1    GFTR01006240    JAW10186.1    GECL01003180    JAP02944.1    KT448842    ALF12302.1    KQ971327    EFA00923.1    GBBI01000189    JAC18523.1    GAKP01016240    JAC42712.1    GDHF01009875    GDHF01008070    JAI42439.1    JAI44244.1    GBXI01015546    JAC98745.1    GAMC01008452    GAMC01008450    GAMC01008448    JAB98107.1    JXJN01000170    CH477257    EAT45823.1    EAT45824.1    AK417598    BAN20813.1    CCAG010000401    EZ422492    ADD18768.1    AJVK01001010    AJVK01001011    AAAB01008846    EAA06410.2    GFDG01000835    JAV17964.1    APGK01053679    KB741231    KB632387    ENN72251.1    ERL94352.1    GEDC01012581    GEDC01007027    JAS24717.1    JAS30271.1    AXCM01014345    GAPW01001439    JAC12159.1    GBHO01008850    GDHC01015818    JAG34754.1    JAQ02811.1    KK852482    KDR22866.1    KA649366    KA649767    AFP64396.1    GFDL01009187    JAV25858.1    JRES01000575    KNC30143.1    JXUM01076042    JXUM01076043    KQ562920    KXJ74841.1    ABLF02021602    CH933810    EDW07773.1    AXCN02002167    GFXV01003464    MBW15269.1    CH902630    EDV38577.1    CH940653    EDW62493.1    OUUW01000003    SPP78557.1    PNF39286.1    GDAI01000339    JAI17264.1    CH379064    EAL31881.1    KRT06635.1    CM000366    EDX18256.1    GGMR01015044    MBY27663.1    CH480823    EDW55963.1    CH954180    EDV46540.1    AF145606    AE014298    AAD38581.1    AAF48783.1    AHN59866.1    QOIP01000011    RLU16861.1    CM000162    EDX02662.1    UFQT01000833    SSX27470.1    DS233521    EDS30381.1    GECZ01006605    JAS63164.1    CVRI01000004    CRK87440.1    CH964291    EDW86424.1    AXCN02002351    KQ435724    KOX78477.1    ATLV01013411    KE524855    KFB37902.1    CP012528    ALC48393.1    KQ434783    KZC04716.1    AAMC01141857    BC166312    AAI66312.1    MCFN01000104    OXB65089.1    GL449825    EFN81892.1    AHAT01010607    AHAT01010608    KQ414758    KOC61479.1    CM004473    OCT82385.1    AWGT02000084    OXB78367.1    AADN05000558    ADMH02000095    ETN67836.1    BC081138    CM004472    AAH81138.1    OCT84476.1    LNIX01000001    OXA62902.1    GAMD01000885    JAB00706.1    GGFK01004458    MBW37779.1    LSYS01005191    OPJ78296.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000037510    UP000007151    UP000218220    + More
UP000092461    UP000009046    UP000235965    UP000007266    UP000092443    UP000092460    UP000008820    UP000075880    UP000092445    UP000091820    UP000092444    UP000075903    UP000095300    UP000078200    UP000092462    UP000007062    UP000019118    UP000030742    UP000075883    UP000075900    UP000027135    UP000075920    UP000095301    UP000075885    UP000037069    UP000069940    UP000249989    UP000075884    UP000007819    UP000009192    UP000075886    UP000007801    UP000008792    UP000268350    UP000001819    UP000000304    UP000001292    UP000008711    UP000000803    UP000279307    UP000002282    UP000192221    UP000002320    UP000183832    UP000007798    UP000053105    UP000005203    UP000030765    UP000092553    UP000076502    UP000008143    UP000002358    UP000076408    UP000198323    UP000008237    UP000018468    UP000053825    UP000186698    UP000198419    UP000000539    UP000000673    UP000198287    UP000069272    UP000190648   

PRIDE

D0FH76    Q9Y162   

Pfam

PF17862   AAA_lid_3        + More
PF09336   Vps4_C
PF04212   MIT
PF00004   AAA
PF00010   HLH

Interpro

IPR003959   ATPase_AAA_core        + More
IPR003593   AAA+_ATPase       
IPR041569   AAA_lid_3       
IPR007330   MIT       
IPR015415   Vps4_C       
IPR036181   MIT_dom_sf       
IPR027417   P-loop_NTPase       
IPR003960   ATPase_AAA_CS       
IPR011598   bHLH_dom       
IPR036638   HLH_DNA-bd_sf       

SUPFAM

SSF116846   SSF116846        + More
SSF52540   SSF52540       
SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH

ProteinModelPortal

D0FH76   A0A194QAH5   A0A194QQ60   A0A0L7LRQ1   S4NP65   A0A212F7F0   + More
G3LZX7   A0A2W1BY93   A0A2A4JHS1   A0A1B6GRT2   A0A1B6JKV1   A0A1B0CEA3   E0VZT1   A0A2J7REM5   A0A1L8DW85   A0A224XCM5   A0A0V0G4F4   A0A0N9DVI3   D6WFH6   A0A023FCK6   A0A034VKV7   A0A0K8VZI4   A0A0A1WJB3   W8BH79   A0A1A9X821   A0A1B0ALW9   Q17GP3   A0A182J150   R4WDE1   A0A1A9ZLK4   A0A1A9WIK9   D3TM40   A0A182VJ69   A0A1I8NLR4   A0A1A9UU52   A0A1B0EXD1   Q7QFR0   A0A1L8EH31   N6TV25   A0A1B6DX78   A0A182MTG9   A0A023EUM0   A0A0A9YRA5   A0A182R227   A0A067RG64   A0A182VVI2   T1PLV6   A0A1Q3FEB8   A0A182PM57   A0A0L0CCI1   A0A182GN96   A0A182N225   A0A182N143   J9JLV9   B4L2B2   A0A182QVL6   A0A2H8TML2   B3MXW2   B4M6S6   A0A3B0J8P5   A0A2J7REN3   A0A0K8TSC7   Q29H77   B4R6Q7   A0A2S2PDY0   B4I6L5   B3NWZ3   Q9Y162   A0A3L8D966   B4Q2M1   A0A1W4UN90   A0A336MBZ7   B0XJH8   A0A1B6GL33   A0A1J1HHD7   B4NPI4   A0A182QKU6   A0A0M9A6X9   A0A088A3I7   A0A084VIV8   A0A0M3QYW5   A0A154NYG2   F6ZXA3   B2GUK1   K7J635   A0A182XYD4   A0A226NCZ1   E2BQY9   W5M4P7   A0A0L7QSE9   A0A1L8GF31   A0A226PG52   A0A1D5NYD8   W5JUK6   Q66IY7   A0A226EZ97   T1DQY8   A0A182FIV7   A0A2M4AAH7   A0A1V4K1I7  

PDB

2ZAO     E-value=1.80415e-176,     Score=1590

KEGG

100313493    K12196 vacuolar protein-sorting-associated protein 4 | (RefSeq) Vps4; vacuolar protein sorting 4

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0008568   GO:0005634   GO:0007033   GO:0016887   GO:0046983   GO:0016322   GO:0043162   GO:0045470   GO:0044130   GO:0045197   GO:0097352   GO:0045463   GO:0030036   GO:0045742   GO:1990621   GO:0005768   GO:0048471   GO:0048524   GO:0061738   GO:0036258   GO:0007165   GO:0008270   GO:0016020   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05416

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01343

outside

1  -  438

 

 

Pi

148.609917

Theta

162.927444

Tajima's D

-1.155132

CLR

0.035033

CSRT

0.111594420278986

Interpretation

Uncertain