SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03511
Pre Gene Modal
BGIBMGA004258
Annotation
PREDICTED:_exportin-5-like_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 4.1
 

Sequence

CDS
ATGTCGTCAGAAAGTGACGGCGATGATGAGGGAAAAAGAAACGAGGCGAAAAAACGCAGATATCAAGGGGACGACGGACTATCAGATTCGGACTACATTTATAAACCTTTTCTCAAACCTGGGTACCGTCGTAGTTATCCTGATAACTCTCTTAATGACGAGTTTCCTGTCTACATCGAAGGTATCAGTAGAGAAGATAAAATTGGTAACAAAAATCCTTTACTTTTATCAAAAATATTTAAGTCGGTGAAGGGCATCAAAGAGAACAGGCGCATTAATGCTAATAAAATAATGCTTATATTTAAACAGGCAGTGGCTGCCAATGATTTTATAAACCATAATTGCCTTAAAGAAAATAACATGAAAGCTTACATTCCGGCATCTTCAGTGGAGCGTGTGGGGAAAATAAGATTCATTCCTACAGAAACGAGTAACACTGAACTCTTCGACAAATTAATATCAGATTCAGAAATCATTGCTCAAAACAATATGCTACAGTTGTATCTAAAGAATTTCCACCTTTGCAAAGACTTCAGAACAGACCAGATCATTCAACACAAAAGAATCAAATTAAATCACAGGCCTTAA
Protein
MSSESDGDDEGKRNEAKKRRYQGDDGLSDSDYIYKPFLKPGYRRSYPDNSLNDEFPVYIEGISREDKIGNKNPLLLSKIFKSVKGIKENRRINANKIMLIFKQAVAANDFINHNCLKENNMKAYIPASSVERVGKIRFIPTETSNTELFDKLISDSEIIAQNNMLQLYLKNFHLCKDFRTDQIIQHKRIKLNHRP

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
195
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0031
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07247
outside
1  -  195
 
 

Population Genetic Test Statistics

Pi
162.576902
Theta
120.505478
Tajima's D
0.965449
CLR
0
CSRT
0.652667366631668
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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