Gene

KWMTBOMO03507

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr6(-):9771751-9772899      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.299 Nuclear   Reliability : 1.162

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCTCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGTTATGCGGATGACAGCATGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAAACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGATGAATTGAGCTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTAGAAACTTCCGGGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAATTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCAAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTCTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTTTAG

Protein

MTINAGVPQGSVLSSTLFILYINDMLSIDGMHCYADDSMGDARYIGHQSLSRSVVQEKRSKLVSEVENSLGRVSEWDELSLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLETSGSIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHL

Uniprot

Q6UV17   B9WPT7   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A1E1XGQ7   + More
A0A131Y4I8   A0A147BU27   A0A131XU84   A0A2H9T2H3   W4XNV3   A0A1G4M5I2   A0A1E1XNL1   A0A147BQ97   A0A2H1VC59   A0A090XE26   A0A147BLD0   A0A147BKN8   T2M4I6   A0A1E1X2T1   A0A0P4VTV9   A0A2H9T2R7   A0A147BBC3   W4YCB2   A0A2B4RZI8   A0A131Y4Q4   A0A2H9T2Z5   A0A2B4SAL9   A0A147BNQ9   A0A2B4SJF4   A0A147BJQ0   U5EU32   A0A3B3I8F1   A0A2B4S341   A0A2S2PKE0   A0A131XQS8   L7MAD0   A0A2B4RF95   A0A147BB29   A0A1E1X2P5   A0A3B3HI99   A0A0P4VX79   A0A131XQR9   A0A147BJ69   A0A147BBR8   A0A1E1XGC7   A0A2H9T2V7   A0A0K8RPQ6   A0A131Y4G6   A0A131XV56   W4ZFN2   A0A131XRE4   A0A2G8JHC3   A0A147BL45   U5EQW9   A0A2H9T462   A0A2G8LLY0   A0A2H9T2U6   U5EQG0   A0A2G8KET5   A0A3B1IHU1   A0A2B4RTL1   V5H8T0   A0A147BID3   A0A3Q0IWM1   A0A2H9T361   A0A2B4SNL1   A0A147BI04   V5GPT7   A0A2H9T4F1   A0A2H9T3F5   A0A1E1XNX8   A0A147BLD9   W4Y3F1   A0A131XWB2   A0A146PGB4   A0A147BC70   A0A293LCV4   A0A147BK71   A0A146T2W5   A0A146QVS2   A0A182GL77   A0A131XWC9   A0A0P4VPK5   A0A3B3HKX5   A0A131XKD2   A0A0X3PQL9   A0A0X3PL94   A0A147BM11   Q4QQE6   T1DG92   A0A147BNC9   A0A3B1IHX1  

Pubmed

30148503    28503490    29150518    29209593    25970599    29652888    + More
24065732    17554307    25576852    29023486    25329095    25765539    26483478    28049606    15939396    24330624   

EMBL

AY359886    AAQ57129.1    FM995623    CAX36787.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GEFM01005904    JAP69892.1    NSIT01000637    PJE77413.1    AAGJ04119271    FLMD02000280    SCV66640.1    GFAA01002514    JAU00921.1    GEGO01002473    JAR92931.1    ODYU01001756    SOQ38395.1    GBIH01002577    JAC92133.1    GEGO01004132    JAR91272.1    GEGO01004056    JAR91348.1    HAAD01000593    CDG66825.1    GFAC01005646    JAT93542.1    GDRN01111334    JAI56796.1    NSIT01000538    PJE77518.1    GEGO01007341    JAR88063.1    LSMT01000248    PFX22193.1    GEFM01002324    JAP73472.1    NSIT01000477    PJE77602.1    LSMT01000115    PFX26931.1    GEGO01003312    JAR92092.1    LSMT01000057    PFX30021.1    GEGO01004433    JAR90971.1    GANO01002501    JAB57370.1    LSMT01000222    PFX22988.1    GGMR01016717    MBY29336.1    GEFM01006407    JAP69389.1    GACK01003803    JAA61231.1    LSMT01000646    PFX15469.1    GEGO01007438    JAR87966.1    GFAC01005665    JAT93523.1    GDRN01111326    JAI56798.1    GEFM01006417    JAP69379.1    GEGO01004630    JAR90774.1    GEGO01007187    JAR88217.1    GFAC01000861    JAT98327.1    NSIT01000532    PJE77527.1    GADI01001229    JAA72579.1    GEFM01002398    JAP73398.1    GEFM01006250    JAP69546.1    AAGJ04124300    GEFM01005882    JAP69914.1    MRZV01001974    PIK35151.1    GEGO01003896    JAR91508.1    GANO01004026    JAB55845.1    NSIT01000294    PJE78013.1    MRZV01000037    PIK61266.1    NSIT01000539    PJE77517.1    GANO01004296    JAB55575.1    MRZV01000639    PIK46517.1    LSMT01000297    PFX20951.1    GANP01010944    JAB73524.1    GEGO01004857    JAR90547.1    NSIT01000462    PJE77627.1    PFX29995.1    GEGO01005479    JAR89925.1    GALX01002327    JAB66139.1    NSIT01000271    PJE78081.1    NSIT01000412    PJE77717.1    GFAA01002470    JAU00965.1    GEGO01003794    JAR91610.1    AAGJ04090645    GEFM01005840    JAP69956.1    GCES01143686    JAQ42636.1    GEGO01007027    JAR88377.1    GFWV01000938    MAA25668.1    GEGO01004248    JAR91156.1    GCES01099194    JAQ87128.1    GCES01126385    JAQ59937.1    JXUM01071389    KQ562662    KXJ75371.1    GEFM01005905    JAP69891.1    GDRN01111278    JAI56803.1    GEFH01000988    JAP67593.1    GEEE01008982    JAP54243.1    GEEE01011145    JAP52080.1    GEGO01003567    JAR91837.1    BN000795    CAJ00238.1    GALA01001771    JAA93081.1    GEGO01003111    JAR92293.1   

Proteomes

UP000007110    UP000225706    UP000001038    UP000230750    UP000018467    UP000079169    + More
UP000069940    UP000249989   

PRIDE

Q6UV17    L7MAD0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF03385   STELLO
PF16045   LisH_2
PF00096   zf-C2H2
PF02182   SAD_SRA
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       
IPR005049   STL-like       
IPR006594   LisH       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR015947   PUA-like_sf       
IPR036987   SRA-YDG_sf       
IPR003105   SRA_YDG       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       
SSF57667   SSF57667       
SSF88697   SSF88697       

Gene 3D

3.60.10.10     3.30.40.10     2.30.280.10    

ProteinModelPortal

Q6UV17   B9WPT7   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A1E1XGQ7   + More
A0A131Y4I8   A0A147BU27   A0A131XU84   A0A2H9T2H3   W4XNV3   A0A1G4M5I2   A0A1E1XNL1   A0A147BQ97   A0A2H1VC59   A0A090XE26   A0A147BLD0   A0A147BKN8   T2M4I6   A0A1E1X2T1   A0A0P4VTV9   A0A2H9T2R7   A0A147BBC3   W4YCB2   A0A2B4RZI8   A0A131Y4Q4   A0A2H9T2Z5   A0A2B4SAL9   A0A147BNQ9   A0A2B4SJF4   A0A147BJQ0   U5EU32   A0A3B3I8F1   A0A2B4S341   A0A2S2PKE0   A0A131XQS8   L7MAD0   A0A2B4RF95   A0A147BB29   A0A1E1X2P5   A0A3B3HI99   A0A0P4VX79   A0A131XQR9   A0A147BJ69   A0A147BBR8   A0A1E1XGC7   A0A2H9T2V7   A0A0K8RPQ6   A0A131Y4G6   A0A131XV56   W4ZFN2   A0A131XRE4   A0A2G8JHC3   A0A147BL45   U5EQW9   A0A2H9T462   A0A2G8LLY0   A0A2H9T2U6   U5EQG0   A0A2G8KET5   A0A3B1IHU1   A0A2B4RTL1   V5H8T0   A0A147BID3   A0A3Q0IWM1   A0A2H9T361   A0A2B4SNL1   A0A147BI04   V5GPT7   A0A2H9T4F1   A0A2H9T3F5   A0A1E1XNX8   A0A147BLD9   W4Y3F1   A0A131XWB2   A0A146PGB4   A0A147BC70   A0A293LCV4   A0A147BK71   A0A146T2W5   A0A146QVS2   A0A182GL77   A0A131XWC9   A0A0P4VPK5   A0A3B3HKX5   A0A131XKD2   A0A0X3PQL9   A0A0X3PL94   A0A147BM11   Q4QQE6   T1DG92   A0A147BNC9   A0A3B1IHX1  

KEGG

101744003    no KO assigned | (RefSeq) uncharacterized LOC101744003

GO

GO:0003964   GO:0004519   GO:0016021   GO:0046872   GO:0005739   GO:0003676   GO:0016874   GO:0005634  

PANTHER

PTHR45951:SF3  

Subcellular location

Nucleus  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.17593

Exp number, first 60 AAs:

2.16403

Total prob of N-in:

0.12235

outside

1  -  179

 

 

Pi

56.139564

Theta

51.653084

Tajima's D

0.27036

CLR

0.110273

CSRT

0.444977751112444

Interpretation

Uncertain