Gene

KWMTBOMO03496

Pre Gene Modal

BGIBMGA006346

Annotation

PREDICTED:_pre-mRNA-splicing_factor_18_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(-):9677421-9681619      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.212

CDS

ATGGATATTTTAAAGGCAGAAATTGCAAAAAAACGTAAATTACTTGAAGAAAAGAAAATTATTGATCCATCAAACAAGAAAAAATACTTCAAGAGAGGTGAGCTCTTAGCGAAAGAACAAGAAGAATATTTACGGAAATATGGACCCAAAGTACAGGAGCCTGAAGAAAAACAACTTGAAAAGGTAGAAACAGATCAAAATTATGCGAATGTAGAAACAGAACAGAAAGAGACTCCAGCACTTCCTCGAAATGAAGTTATAAAGAGATTGAGAGAAAGAGGTCATCCAATACTATTGTTTGCTGAAACTGAAATTCAGTCCTTTAAGAGATTAAGAAGAATTGAAATTCAAGAACCAGAAGTTAACAGGGGCTTCCGGAATGACTTCCAAGAAGCGATGGAGAAAGTCGATGAAGCATATTTGAATGAAATATTGGCATTAGGAACTCAGAATGAAGGTGAAAATTCGTCCAAAGAAGATGCACTTGATGATTCTATTACATATGAAACCATTCAAGAAATGGCAAAAACAATGGGACAAGGCGATAGAAACCATGATATGAATGTAATCATGACATTATTGCAATTCTTGCTAAAGTTGTGGGGTCAGCAACTGAGTTCTGCTGCAGCAGGACAGAAAGCAGCAATCAAGCATAAAATGACGAGAGCCACATACACCCAAACACAGGTTTATCTCAAGCCTCTAATGAGAAAACTAAAAAAGAAAAACTTGCCTGAAGACATCTGTGACAGTTTAACAGAAATAACAAAACATCTGTTAGATAGAAACTACATTATGGCCAGTGACGCATATCTTCAAATGGCGATTGGCAATGCGCCATGGCCAATCGGTGTAACCATGGTGGGTATTCACGCCCGTACAGGACGGGAGAAAATCTTCTCTAAGAACGTAGCACACGTTATGAACGACGAAACTCAAAGAAAATACATTCAAGCGCTTAAACGTCTTATGACTAAATGTCAGGAGTATTTCCCTACAGATCCATCTAGATGTGTGGAGTATACTACTATCAGATAA

Protein

MDILKAEIAKKRKLLEEKKIIDPSNKKKYFKRGELLAKEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQKETPALPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEITKHLLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQALKRLMTKCQEYFPTDPSRCVEYTTIR

Similarity

Belongs to the MCM family.

Uniprot

H9JA01   A0A2W1BU57   A0A2A4JLG4   A0A2H1WCP4   A0A212EIW6   S4NX41   + More
A0A1E1VZ01   A0A194QBS7   A0A2J7QRC7   A0A0L7QPF7   A0A182GF53   A0A182XLZ9   Q16YV2   A0A182J483   A0A182VNQ8   A0A182UG31   Q7QBT9   A0A182HTG9   U5EY01   A0A182M9F0   A0A182XVF0   A0A023F847   A0A0V0GB36   A0A182FQ09   A0A1Q3FD33   A0A1B6KUY8   W5JIE6   A0A194QXS1   A0A1I8JUH1   A0A182QXV9   B0WCY0   A0A1B6IJF3   A0A2A3E2V7   A0A182JZB5   A0A310S8N7   A0A182W2M7   A0A232F4Z0   A0A1B0GJH8   R4FNF6   A0A182PEL5   A0A195FSE6   A0A1B6GTP5   F4WFL4   A0A336MML1   A0A336MP69   A0A154PDK8   E0VE67   A0A182NG98   D6W9R9   E2BBC4   A0A195CSS1   A0A158NSH5   A0A0J7NLU6   A0A0L0CJ86   E2AAJ0   A0A067RCM6   A0A1B0G846   A0A1B0ACL3   K7J6Z5   A0A0C9RJG6   E9JDH8   W8C5Z6   A0A3B0K905   A0A1I8MWR7   A0A026WKU6   A0A1W4UMU9   Q29BT5   B4GPN8   A0A1A9VR30   A0A1A9X187   A0A1A9XI51   A0A1B0BWJ8   A0A151WI78   B4NHY7   B4PMR0   A0A034VR84   B4K7A7   A0A0K8VU41   B3P379   A0A0A1WWS2   B4QTV8   Q9V437   A0A1Y1MTR3   A0A151HYS9   B4LXA4   B4ILV4   A0A151J4B7   A0A0A9YUK0   B3LVB7   A0A182S696   A0A0M4ELB8   A0A2R7WBQ0   A0A1I8NVF4   B4JSG2   A0A2M4AYP9   A0A0P4VJR2   A0A0K8TS61   E9HEU7   A0A182LFN8   A0A162T311  

Pubmed

19121390    28756777    22118469    23622113    26354079    26483478    + More
17510324    12364791    14747013    17210077    25244985    25474469    20920257    23761445    28648823    21719571    20566863    18362917    19820115    20798317    21347285    26108605    24845553    20075255    21282665    24495485    25315136    24508170    30249741    15632085    17994087    17550304    25348373    25830018    10858562    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28004739    25401762    26823975    27129103    26369729    21292972    20966253   

EMBL

BABH01009467    KZ149899    PZC78612.1    NWSH01001141    PCG72424.1    ODYU01007651    + More
SOQ50612.1    AGBW02014560    OWR41432.1    GAIX01009224    JAA83336.1    GDQN01011104    JAT79950.1    KQ459249    KPJ02445.1    NEVH01011914    PNF31139.1    KQ414815    KOC60523.1    JXUM01059244    JXUM01059245    KQ562042    KXJ76832.1    CH477508    EAT39810.1    AAAB01008859    EAA07486.3    APCN01000528    GANO01000646    JAB59225.1    AXCM01000235    GBBI01001251    JAC17461.1    GECL01001538    JAP04586.1    GFDL01009643    JAV25402.1    GEBQ01024727    JAT15250.1    ADMH02001428    ETN62564.1    KQ461155    KPJ08376.1    AXCN02001627    DS231891    EDS43940.1    GECU01020661    JAS87045.1    KZ288416    PBC26028.1    KQ764027    OAD54631.1    NNAY01000931    OXU25851.1    AJWK01021758    AJWK01021759    GAHY01001314    JAA76196.1    KQ981276    KYN43510.1    GECZ01003961    JAS65808.1    GL888120    EGI66991.1    UFQT01001722    SSX31526.1    UFQS01001453    UFQT01001453    SSX10958.1    SSX30623.1    KQ434878    KZC09897.1    DS235088    EEB11673.1    KQ971312    EEZ98537.1    GL446990    EFN87005.1    KQ977329    KYN03572.1    ADTU01024931    LBMM01003504    KMQ93455.1    JRES01000321    KNC32315.1    GL438128    EFN69537.1    KK852593    KDR20675.1    CCAG010000187    GBYB01013397    JAG83164.1    GL771866    EFZ09245.1    GAMC01004604    GAMC01004602    JAC01952.1    OUUW01000007    SPP82549.1    KK107161    QOIP01000003    EZA56588.1    RLU25301.1    CM000070    EAL26912.1    CH479186    EDW39121.1    JXJN01021835    KQ983089    KYQ47569.1    CH964272    EDW83637.2    CM000160    EDW95980.1    GAKP01013156    GAKP01013154    JAC45796.1    CH933806    EDW14231.1    GDHF01009918    JAI42396.1    CH954181    EDV48531.1    GBXI01011449    GBXI01006663    GBXI01001127    JAD02843.1    JAD07629.1    JAD13165.1    CM000364    EDX12381.1    AF170829    AE014297    AY118327    AAD49741.1    AAF55627.1    AAM48356.1    GEZM01021241    JAV89063.1    KQ976719    KYM76751.1    CH940650    EDW66756.1    CH480892    EDW55430.1    KQ980159    KYN17430.1    GBHO01007725    GBRD01006618    GDHC01008713    JAG35879.1    JAG59203.1    JAQ09916.1    CH902617    EDV43649.1    CP012526    ALC46065.1    KK854585    PTY17124.1    CH916373    EDV94702.1    GGFK01012586    MBW45907.1    GDKW01002124    JAI54471.1    GDAI01000838    JAI16765.1    GL732631    EFX69731.1    LRGB01000014    KZS21857.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000235965    UP000053825    + More
UP000069940    UP000249989    UP000076407    UP000008820    UP000075880    UP000075903    UP000075902    UP000007062    UP000075840    UP000075883    UP000076408    UP000069272    UP000000673    UP000053240    UP000075900    UP000075886    UP000002320    UP000242457    UP000075881    UP000075920    UP000215335    UP000092461    UP000075885    UP000078541    UP000007755    UP000076502    UP000009046    UP000075884    UP000007266    UP000008237    UP000078542    UP000005205    UP000036403    UP000037069    UP000000311    UP000027135    UP000092444    UP000092445    UP000002358    UP000268350    UP000095301    UP000053097    UP000279307    UP000192221    UP000001819    UP000008744    UP000078200    UP000091820    UP000092443    UP000092460    UP000075809    UP000007798    UP000002282    UP000009192    UP000008711    UP000000304    UP000000803    UP000078540    UP000008792    UP000001292    UP000078492    UP000007801    UP000075901    UP000092553    UP000095300    UP000001070    UP000000305    UP000075882    UP000076858   

PRIDE

H9JA01    Q9V437   

Pfam

PF08799   PRP4        + More
PF02840   Prp18
PF17855   MCM_lid
PF17207   MCM_OB
PF00493   MCM

Interpro

IPR014906   PRP4-like        + More
IPR039979   PRPF18       
IPR004098   Prp18       
IPR036285   PRP4-like_sf       
IPR041562   MCM_lid       
IPR027417   P-loop_NTPase       
IPR012340   NA-bd_OB-fold       
IPR003593   AAA+_ATPase       
IPR031327   MCM       
IPR001208   MCM_dom       
IPR033762   MCM_OB       

SUPFAM

SSF158230   SSF158230        + More
SSF52540   SSF52540       
SSF50249   SSF50249       

Gene 3D

1.10.720.150    

ProteinModelPortal

H9JA01   A0A2W1BU57   A0A2A4JLG4   A0A2H1WCP4   A0A212EIW6   S4NX41   + More
A0A1E1VZ01   A0A194QBS7   A0A2J7QRC7   A0A0L7QPF7   A0A182GF53   A0A182XLZ9   Q16YV2   A0A182J483   A0A182VNQ8   A0A182UG31   Q7QBT9   A0A182HTG9   U5EY01   A0A182M9F0   A0A182XVF0   A0A023F847   A0A0V0GB36   A0A182FQ09   A0A1Q3FD33   A0A1B6KUY8   W5JIE6   A0A194QXS1   A0A1I8JUH1   A0A182QXV9   B0WCY0   A0A1B6IJF3   A0A2A3E2V7   A0A182JZB5   A0A310S8N7   A0A182W2M7   A0A232F4Z0   A0A1B0GJH8   R4FNF6   A0A182PEL5   A0A195FSE6   A0A1B6GTP5   F4WFL4   A0A336MML1   A0A336MP69   A0A154PDK8   E0VE67   A0A182NG98   D6W9R9   E2BBC4   A0A195CSS1   A0A158NSH5   A0A0J7NLU6   A0A0L0CJ86   E2AAJ0   A0A067RCM6   A0A1B0G846   A0A1B0ACL3   K7J6Z5   A0A0C9RJG6   E9JDH8   W8C5Z6   A0A3B0K905   A0A1I8MWR7   A0A026WKU6   A0A1W4UMU9   Q29BT5   B4GPN8   A0A1A9VR30   A0A1A9X187   A0A1A9XI51   A0A1B0BWJ8   A0A151WI78   B4NHY7   B4PMR0   A0A034VR84   B4K7A7   A0A0K8VU41   B3P379   A0A0A1WWS2   B4QTV8   Q9V437   A0A1Y1MTR3   A0A151HYS9   B4LXA4   B4ILV4   A0A151J4B7   A0A0A9YUK0   B3LVB7   A0A182S696   A0A0M4ELB8   A0A2R7WBQ0   A0A1I8NVF4   B4JSG2   A0A2M4AYP9   A0A0P4VJR2   A0A0K8TS61   E9HEU7   A0A182LFN8   A0A162T311  

PDB

1DVK     E-value=2.40283e-11,     Score=165

KEGG

101747222    K12817 pre-mRNA-splicing factor 18 | (RefSeq) pre-mRNA-splicing factor 18

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0008380   GO:0005681   GO:0003677   GO:0005524   GO:0006270   GO:0000350   GO:0005682   GO:0071021   GO:0071048   GO:0046540   GO:0016021   GO:0000398   GO:0006260   GO:0003676   GO:0004352   GO:0000287   GO:0003723   GO:0042555   GO:0048384  

PANTHER

PTHR13007   PTHR11630  

Length:

345

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.33709

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02938

outside

1  -  345

 

 

Pi

297.15288

Theta

202.820998

Tajima's D

1.472682

CLR

0.530619

CSRT

0.778611069446528

Interpretation

Uncertain