SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03492
Annotation
PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 4.472
 

Sequence

CDS
ATGACAAAGCCGCGCACACGTCGTCAGTCTCGTCGACAATCCGAGTATTTCGAACCGACAGAGGACGATTCTTCCCCGCCGCCGACTGCATCGGGAAACATTTCCGTCAACGACATGGTCGCCATGATGTCTACGTGGCAACGCAACCAAGAGGAAACGTTTGAGAAACTTCTACATACAGTTCTCAACCAATCGCACCGGTCATCGCCGCCGCCCGCTCAACCTGCACTTGGAAACTTCGCCTCGTGCAAGGCTCGCTACAGCGGAGCGCCAGACGAATCACTTGACGGATTTATAGACGCCGTAGAGGCCTACAAGGAATGTGCAAACGTAAGCGAAACTAATGCACTACGTGGGTTGTCAATGTTGTTAACTCATGAAGCCGCGACATGGTGGCAAGGAGTTAAGACCACCATGAACAAGTGGGACCACGCCCTCACATCCCTAAGAGGTGCGTTTGGTGATAGCCGACCTCCACATCGTATATACAAGGAGCTGTTCGCCAACCCACAAAAAGCAAGTGAGAAAACAGAACTCTTCATCTCTAAAACTCGAGCGCTACTATCACGTCTGCCAAAGGACGATCTGACAACCAAAGTACAGATGGACATGGTGTATGGACTACTACATAGTAAAATACGCGAGCGTTTGAGAAGAGAGGAGATTGACACATTTGACACGCTACTCAGAAAGTCTAGAGAGATAGAAGAATCTTGTGACGAGAGTCTATCAACTAGTGGCCTTCAGAGCAAACTGCGCCAACGACAGTTTCCACCGCCTCGTCATGCCGCAAGCATCGCCGCTGTCCAGGGGTCAACGACCGCGCCACCACTACCACCGCAGAGCGCGCCTAAGCCGCCTGCGCCCGCCGTTGAGTCCAGCGCCCACGGCACCTATCGCCGTTCTCTTCGCTGCTCCGTGGTGCCGCCCCCACCGTCGTCTCCACAACCCCACGGCTCTTCTACTCAGTTCGTGAACGCCAGACGTCGATATTGTTTCTATTGCAAGAACTATGGACATACACGTGAAGAGTGTCGTAGGTTAGCAGCTAAAGGCAAACAGGACATCGATAACGCCGCCGACCCCGTCCCGTCGTGTTACGGATGCAACGAGAAAGGTGTCACTCGATCACAGTGTGCTAAATGCAATTCGGACTTCTCTGCGTGTGAATACGACGGTCCGAAAGGCGCGCTGATGGGAATTTACGGTACAAGGTTCCCCCTCGAGCATGCTATCACTACCAGAGTCCAATTTTGA
Protein
MTKPRTRRQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHTVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVKTTMNKWDHALTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSRLPKDDLTTKVQMDMVYGLLHSKIRERLRREEIDTFDTLLRKSREIEESCDESLSTSGLQSKLRQRQFPPPRHAASIAAVQGSTTAPPLPPQSAPKPPAPAVESSAHGTYRRSLRCSVVPPPPSSPQPHGSSTQFVNARRRYCFYCKNYGHTREECRRLAAKGKQDIDNAADPVPSCYGCNEKGVTRSQCAKCNSDFSACEYDGPKGALMGIYGTRFPLEHAITTRVQF

Summary

Pfam
PF00077   RVP
Interpro
IPR036875   Znf_CCHC_sf        + More
IPR021109   Peptidase_aspartic_dom_sf       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
SUPFAM
SSF57756   SSF57756        + More
SSF50630   SSF50630       
Gene 3D

Ontologies

Topology

Length:
418
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00811999999999999
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.07629
outside
1  -  418
 
 

Population Genetic Test Statistics

Pi
253.142429
Theta
186.579438
Tajima's D
1.122625
CLR
19.249574
CSRT
0.689815509224539
Interpretation
Uncertain
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