Silkworm Genome Informatics Database

Gene

KWMTBOMO03491

Pre Gene Modal

BGIBMGA006348

Annotation

Robo1a_[Bombyx_mori]

Location

Bomo_Chr6(-):9533596-9551906 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.744 Nuclear Reliability : 1.388 PlasmaMembrane Reliability : 1.057

CDS

ATGATGGATGCTGGTGTTAATGAGTGCGATAACGCGGCAAATGGAAGGAACCAATTCGTGTTTCTTGTGCTTGTGCATTTACTACTTATCGGACTAAATGGGACTAATGCACAGAATAGAGCACCTCGCATCAAAGAGCATCCGTCGAATACTGTGTCAGGACGCAGTGAACCGGCAACATTGAGATGTGTCGTGGAAGGCCGACCTAAACCTTATGTACAGTGGTTCAAAGACGGATTACCCTTGCCTCAAGCAGAAGACGGACACAGGGTCTTACTCGAAGACGGGCTGTTATTCTTGAGGGTCAACCGAGGGAAGAAAGATAGCGATGAGGGTATTTATTGGTGTGTTGCACGCAACATTGCCGGTGAGGCCGTCAGCCAGAATGCTTCGCTTAATGTGGCTATGCTAAGAGATGAATTCCGAATGGAGCCTAGGGATGTGCAAGTGGCCGCTGGTGAGCCAGCACTATTAGAGTGTTCTCCTCCAAGAGGAGTACCAGAACCATCTGTGCAATGGCTTAAAGACGGACAATCCTACGATGTAGAAGTTAATGGAAGAGTCACAATAACAGATACAGGAAACCTTAAAATTTTAGAAACACTACCCACTGATAGTGGTTTATTTCGATGCGTGGCGACAAATATAGCCGGCGAACGACAGTCAAGAGCCGCTGCTTTAATTGTTTTAAGACGACCACATTTCGTTGTTAAACCTAGTAATGTTACTGCTTTAGTGGGTCAAACTGTCGAATTTAACTGCCAGAGTTACGACTCGAACGTAAAAATAACTTGGGTCAAGGAAGATGGAACGCTGCCGTCTCATGCAACAATAATTCGTGGACTACTAAAATTAGAGCACGTATCTGCAACTGATGCTGGCGTCTATTCATGTCGTGCAGACAGCCACGCGGGAACCAGTATCACCAGTGCCACACTCACGGTTTATTCATTACCGCATTTCACGCAGATACCGTCCAACCTAACAGCTTGGGAAGGCGATGTTGTATCTATTCCATGCGATGCCAAAGGATTACCAACGCCGACGACGTTTTGGATATTAGAAGGCAAACAAGATTCGATGCTTTTTCCGGAATGTACTAGAAGCAATACGAGTTTGTTGTATTTGGACAGTGCGCGGGCGGAGCAAAGTGGAAGGGTAATTTGTACTGCAGTTAACGCAGCTGGAAGTATCATGCAAGAAGCGTATCTTACCGTTCTTAGAAAAGGAAATAGCGAGTTAAGAGACCATACGGATGATGACTTCGAAGATGATTTAGATCGCAATGTTCATATGACCGAGTATGAACTTCTTCAAGCGAGAAAATATCTCCAGCAAAACGTATTAGTGTTGAAGCGAATTGAAATGCTATCATCTTCAAGTGTTAAAGTTGTTTGGGATGTGCTAACAGACTATAATGAATATTTAGAAGGGGTTAAAATATGGTACAATGGGACAACGTTAAATTGGCGAAATATCACAGAAGAAGATTTAACTCAACAAAATTCACATTCAAACACTATTCTGTGCTTAAATGGATCTCTCACCAATGTTGACAACAGTGGTTCATCAAGCTATATACTGTCAGGATTGATGACTTACACGCAATATGATATATTTTTGATGCCATTTTATAAGACCCTTCTAGGGAAGCCTTCCAACATGATGAGTGGGTTTACGGATGAGGGTGTACCGTCGGCACCACCCCAAAGCGTCACAGCAGGGGTGATAAACGCAACATCGGCGTGGATACGGTGGGAGCCACCACCTGTGAGGACTTGGAACGGCGAACTTACCGGTTATTTGATAGAGATACGCGTGAGTGGCAGCACAGGTGGTCGGGTTGTGGGTCAGATGTCATTGAACTCCCGCACCCGCGCCGCAGCCGCGAGCTCCCTCCGCGCGGGTGGCCGCTACACCGCGCGGGCGGCCGCCGTCACGCGTCGCGGACACGGCCCATTCAGTGCACCGGCGCTGATACACATGCTGCCAACTCAGTCGCAGAGGCATTACGTACAGACTGAACCACCAAAAGATTCAAATATACCGAACATACTACAAGAGACTTGGCTCTTGGCTCTCGGGCTCACCCTTTTCTCTGTCATCATCATTGGAGCCGTCAGCATTTACTACATCAAACGGAGAAACAACATACAAAGAAAAAAGTCTGCCGGTCAATCGATTGTCACGGCTCAACAATGTCTCCTAAATAAAGACACGGTTTGGCTTCGCGACAGGCCCGTATTCGGACCGCCTAACGACACGAGCATCGACGTCAACAGCTGTCACCAGAGTCTTTTACATAATGGACAAACCACAAGTATTCTGAACGTGGAACCAGAGTATAGCTTACCGCAGAACTCCATTCAAGGACTAGACGCATCAAGCGTCGACCGTATCAGACGCGGACCACCGGAGCCATACGCGTCAAGCGCCATTTACACAGAACTCAATTTTAAGGACAACAACGAAATCGGAGACCTGAGAGGCTGTCCGGACAGACGATCTCATAACAATAGCATTGTAAGATCGTGTAATGGAAGCATACAATATTCAAATGGCGAATGCTCGACTTGTTGTCACAGTACTTCGAGTAGATCGACCAAAGACTACAGAGAGCTAAGACACGACAATGTACAGAATGAAATTAATGTCTTGGAGGACGACTGCGGTTCTTGCCACACGAACAGATCTGGATCGAGGAGTAGACAGGACAAAAGCAAAGTTTGTCCGGCCGCTGATTTAGATTACGACTATCCCCAATGGCATTGGCTGGGACGGGAGAACAGCTTCAAAATTCCCATCCAAACGAGCAGACATTCGAACATCGCGAGGTCGGAGCAGGGCTGTCAAATAAATCTATGTGATATACTGCCGCCGCCGCCGTATGAGAGTCCAGAAAACAGGCACAACTATGGATCGGAAAAGAATTAG

Protein

MMDAGVNECDNAANGRNQFVFLVLVHLLLIGLNGTNAQNRAPRIKEHPSNTVSGRSEPATLRCVVEGRPKPYVQWFKDGLPLPQAEDGHRVLLEDGLLFLRVNRGKKDSDEGIYWCVARNIAGEAVSQNASLNVAMLRDEFRMEPRDVQVAAGEPALLECSPPRGVPEPSVQWLKDGQSYDVEVNGRVTITDTGNLKILETLPTDSGLFRCVATNIAGERQSRAAALIVLRRPHFVVKPSNVTALVGQTVEFNCQSYDSNVKITWVKEDGTLPSHATIIRGLLKLEHVSATDAGVYSCRADSHAGTSITSATLTVYSLPHFTQIPSNLTAWEGDVVSIPCDAKGLPTPTTFWILEGKQDSMLFPECTRSNTSLLYLDSARAEQSGRVICTAVNAAGSIMQEAYLTVLRKGNSELRDHTDDDFEDDLDRNVHMTEYELLQARKYLQQNVLVLKRIEMLSSSSVKVVWDVLTDYNEYLEGVKIWYNGTTLNWRNITEEDLTQQNSHSNTILCLNGSLTNVDNSGSSSYILSGLMTYTQYDIFLMPFYKTLLGKPSNMMSGFTDEGVPSAPPQSVTAGVINATSAWIRWEPPPVRTWNGELTGYLIEIRVSGSTGGRVVGQMSLNSRTRAAAASSLRAGGRYTARAAAVTRRGHGPFSAPALIHMLPTQSQRHYVQTEPPKDSNIPNILQETWLLALGLTLFSVIIIGAVSIYYIKRRNNIQRKKSAGQSIVTAQQCLLNKDTVWLRDRPVFGPPNDTSIDVNSCHQSLLHNGQTTSILNVEPEYSLPQNSIQGLDASSVDRIRRGPPEPYASSAIYTELNFKDNNEIGDLRGCPDRRSHNNSIVRSCNGSIQYSNGECSTCCHSTSSRSTKDYRELRHDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDILPPPPYESPENRHNYGSEKN

Uniprot

A0A0U1XFY8 H9JA03 A0A2W1BU86 A0A2A4K415 A0A194RPY2 A0A212EIX7 + More
A0A194Q114 A0A2W1C0W5 A0A2A4J172 A0A194RNP9 A0A194Q056 A0A2H1WYH2 A0A0U1XFF9 A0A0L7LU22

Pubmed

26642898 19121390 28756777 26354079 22118469 26227816 + More

EMBL

KF831574 AIT40271.1 BABH01009452 KZ149899 PZC78608.1 NWSH01000152 + More
PCG78997.1 KQ459896 KPJ19464.1 AGBW02014560 OWR41428.1 KQ459583 KPI98679.1 PZC78606.1 NWSH01004350 PCG65190.1 KPJ19463.1 KPI98678.1 ODYU01012027 SOQ58111.1 KF831575 AIT40272.1 JTDY01000128 KOB78706.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000007151 UP000053268 UP000037510 + More

PRIDE

H9JA03

Pfam

PF07679   I-set        + More
PF00041   fn3
PF00853   Runt

Interpro

IPR013783   Ig-like_fold        + More
IPR007110   Ig-like_dom
IPR003599   Ig_sub
IPR003961   FN3_dom
IPR036116   FN3_sf
IPR013098   Ig_I-set
IPR036179   Ig-like_dom_sf
IPR003598   Ig_sub2
IPR008967   p53-like_TF_DNA-bd
IPR013524   Runt_dom
IPR012346   p53/RUNT-type_TF_DNA-bd_sf
IPR000040   AML1_Runt

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265
SSF49417   SSF49417

Gene 3D

2.60.40.10 2.60.40.720

CDD

cd00063 FN3

ProteinModelPortal

A0A0U1XFY8 H9JA03 A0A2W1BU86 A0A2A4K415 A0A194RPY2 A0A212EIX7 + More
A0A194Q114 A0A2W1C0W5 A0A2A4J172 A0A194RNP9 A0A194Q056 A0A2H1WYH2 A0A0U1XFF9 A0A0L7LU22

PDB

5OPE E-value=2.16676e-80, Score=765

KEGG

101737220 K06754 roundabout, axon guidance receptor 2 | (RefSeq) roundabout homolog 2-like

GO

GO:0016021 GO:0005524 GO:0003700 GO:0003677 GO:0005634 GO:0005515 GO:0003676 GO:0015074 GO:0004352 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

SignalP

Position: 1 - 37, Likelihood: 0.536555

Length:

977

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

37.89648

Exp number, first 60 AAs:

14.96622

Total prob of N-in:

0.76003

POSSIBLE N-term signal

sequence

outside

1 - 689

TMhelix

690 - 712

inside

713 - 977

Pi

244.289437

Theta

174.945345

Tajima's D

1.144796

CLR

0.001409

CSRT

0.700514974251287

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree