Silkworm Genome Informatics Database

Gene

KWMTBOMO03490

Pre Gene Modal

BGIBMGA006532

Annotation

PREDICTED:_immunoglobulin_superfamily_DCC_subclass_member_3-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):9393707-9400334 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.146

CDS

ATGATCGCCGGTTCGAATAAGAATAAACAAATATGCAATCAAGTGAAATTTATTGTACTGTTGTATTTTTTATTGAATTTACCTTGTACCGCGAGATCTCAAAGCCGGGCTCCGCGTATAAAAGAACATCCAGCCGACACAATAGTCGGTAGAAGCGAGCCTGCTACTCTGCGGTGTGTATCCGAAGGAAAGCCCAAACCGACAATACAGTGGTATAAAGATGGCACGCCTCTTACTTCTAATGACCACCCACAAAGAGTGCTGCTTGAAGACGGATTACTCTTCCTTAGGGTTATGCGAGGCAAGAAGGAAAGCGACGAGGGCGTCTACTGGTGCGTCGCACGCAACCCCGTCGGGGAAGCAGTTAGCAAAAACGCCACGCTTACTATTGCCGTACTCCGCGATGAATTTAAGATCGAACCTCACGATGTAAAAGTAGCTAGTGGCGAACCTGCTCTTTTACAATGCGCATCACCGAAAGGGGTGCCTGATCCGTCTATACATTGGAATAAAGATGGGCATAGTTTAGACGTAGAAATCAATGGAAGAATATCAGTAGTGAATGGAGGTGATTTAAAAATACTGGAAACAATACCATCGGACAGTGGTGTTTATAGATGTGTAGCGTCTAATGTGGCAGGCGAAAGGCAATCTCATCCTGCTACGCTTCTCGTCTTACGCAGACCGCATTTTCTGGTGAAACCGAATAACATAACGGCTTTAATAGGCCAGAACATTGAGTTTCACTGTCAAGCATCACCAGAATCCGATGTATCAGTAAGTTGGGCACGAGACAGTGGTTCGTTGTCTCCGTACGCGATAATTCGAAGAGGTTCGCTAAGAATAGATCGCGTTGTTGCTACCGATGCGGGGACATACACTTGCAGAGCCGAAAGCCAAGCAGGCTCTAGTTCTGCGAGTGCATCTTTAACTGTAAACTCTTTACCGCATTTTACACGAGTACCTTCAGACACAACAGCGTGGGAGGGAGAAGCGGTATCATTCCCTTGTGAAGCAGATGGTTCCCCGAGACCAGTCGTCTTTTGGACAATGGAAGGGTCTCAAGAATTAGTTTTTACGAAATCAACGCACAGCTCCGGATATTTATATTTGGATCGAGTCACAATAAGACATGCAGGAAGACTTACTTGCGTCGCTGTGAATTCTGCTGGGAGCGCTTTGCATACTGCCACTTTGCAGGTATTAAGGAGAGAAGCTAATAATTTTAAGGATGATTTAGACTCATCCTCGCCCTATCCTGAATTGAGTAAACCCTTAAATTATCCACCAATGACTCAATATGAATTAGTGCAGGCTCGACGATACTTACAACAGGATGTATTATCTTTGAAACGAGTGGAGGGTATTTCGGCTACGACTTTAAAAATTGTATGGGATGTAATGACAGAGTACAACGAATATCTTGAAGGTGTTAAAATTTGGTTCAACGGGACTTCATTAAACAGCAGAAGTGCCTTGGAACTTGACTATAATTCCAACGAATCGACTATTGATTATATGACAGATTTTAGAAAATATGAAAACTTTACTATGACAACTGTACACAACAGTGGTTCGTCTAGTCATGTACTAACAGGCCTATTACCTTACGCTCAATACGATGTGTTTTTGATGCCGTTCTACAAACTATTATTAGGAAAACCTTCCAACATGCGTACCGGTTTTACAGAGGAAGATGTTCCTTCGGAGCCTCCGCTAAGTGTTACAGCGGGAGTGATAAATGCGACATCAGCTTGGATTAGATGGGAAGCACCTCCTGTTTACGCGTGGAACGGAGAAATCTCCGGATATCTGATCGAAGTTCGCGTTGGTGGATCCACTGGAGGTCGAGTAGTGGGACAGATGTCGCTAGGTCCCAAAACTAGGGCAGCAGCAGCTAGTTCCTTGCGTGCTGGAGGTCGGTACAGCGCAAGAGCTGCAGCCGTTACCAAGCGAGGTCACGGACCTTTCAGCCCGCTATCTCATTTTCACATGGTTCCTACACAAACTCAGAGACATTACGTGCAAACGGAACCAGCCACAGACAAAGCAATAATATCGATGTTCCAAGAAACCTGGCTCTTAGCACTCAGTGTAACATTGTTAGTGTTAATATTTGCTGGAGTTGGTGTTATAGTTTACATTAAGAAACGTCATTCTAAACAACAAAAAAATCAGAGCTCAACCGGAAATACAGTAGTTAATGCTCAACAATGTCTCCTGAGGAAAGAAGCTGTTTGGTTAAGAGAAAGATCAGTTTTTGAAGGATCAACGGAACCGAGAATCGAAATTTTAAACTGTCATCAGACTCTTTTAAAAAGCGGTCACTCCGTAGGTACAATGGCTACGGAAGCTGAATATAGTCTTCCTCAACATTCGAACACAGTAAATCCAAAGTGCGAAGAAGAACAACAAAGACTCCAACCACAGCCATACGCATCTTGTGCCATTTACACAGAACTAAATTATCAAGATAACACAGACGCGGAAGATTCTTGTATGAAGTGCGCCATTAGCCCAGGTTCCTATGACAATAGTATGATTAGGTCTTATGGAGAAAGTAATCAATATTCAAATGAAGAGTGCTCTACATGCTGCAGGAGTAGTAGTTCCACTTTAACAAAAGATTATAGTGACATGACAAAATGCAATGAAGACCAAGATATGTCAATAGAAGACTGTCCTTCGTGCAAAACTAATCACTCGAGATCATCTAGTCATCACGGAGGCAACAAAGAGTGGACCACGGCGGATGTTGAATACGATTATCCCCAATGGAATTGGTTGGGCCGAGACAACAGTTTCAGGAATACAAACTCAGAGCCTAGGTATAATGGAGAAAATTGTTTTAGGCAAATAGGTCAAGAACTTAGATACAATAGTGCGGATAGAAGTGAACAAAATTGTAGAATGAATTTATGCGATATATTGCCTCCGCCGCCCTATGAAAGGGAGTCTCCATATAGAGATATGAATGCATTTACAAATCACTCAGGGACATCGGGTTGTTCCGGACATACGTACCGAAGCTAA

Protein

MIAGSNKNKQICNQVKFIVLLYFLLNLPCTARSQSRAPRIKEHPADTIVGRSEPATLRCVSEGKPKPTIQWYKDGTPLTSNDHPQRVLLEDGLLFLRVMRGKKESDEGVYWCVARNPVGEAVSKNATLTIAVLRDEFKIEPHDVKVASGEPALLQCASPKGVPDPSIHWNKDGHSLDVEINGRISVVNGGDLKILETIPSDSGVYRCVASNVAGERQSHPATLLVLRRPHFLVKPNNITALIGQNIEFHCQASPESDVSVSWARDSGSLSPYAIIRRGSLRIDRVVATDAGTYTCRAESQAGSSSASASLTVNSLPHFTRVPSDTTAWEGEAVSFPCEADGSPRPVVFWTMEGSQELVFTKSTHSSGYLYLDRVTIRHAGRLTCVAVNSAGSALHTATLQVLRREANNFKDDLDSSSPYPELSKPLNYPPMTQYELVQARRYLQQDVLSLKRVEGISATTLKIVWDVMTEYNEYLEGVKIWFNGTSLNSRSALELDYNSNESTIDYMTDFRKYENFTMTTVHNSGSSSHVLTGLLPYAQYDVFLMPFYKLLLGKPSNMRTGFTEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGYLIEVRVGGSTGGRVVGQMSLGPKTRAAAASSLRAGGRYSARAAAVTKRGHGPFSPLSHFHMVPTQTQRHYVQTEPATDKAIISMFQETWLLALSVTLLVLIFAGVGVIVYIKKRHSKQQKNQSSTGNTVVNAQQCLLRKEAVWLRERSVFEGSTEPRIEILNCHQTLLKSGHSVGTMATEAEYSLPQHSNTVNPKCEEEQQRLQPQPYASCAIYTELNYQDNTDAEDSCMKCAISPGSYDNSMIRSYGESNQYSNEECSTCCRSSSSTLTKDYSDMTKCNEDQDMSIEDCPSCKTNHSRSSSHHGGNKEWTTADVEYDYPQWNWLGRDNSFRNTNSEPRYNGENCFRQIGQELRYNSADRSEQNCRMNLCDILPPPPYERESPYRDMNAFTNHSGTSGCSGHTYRS

Uniprot

A0A0U1XFF9 A0A2A4J172 A0A2W1C0W5 A0A2H1WYH2 A0A194Q056 A0A194RNP9 + More
A0A0L7LU22 A0A2W1BU86 A0A2A4K415 A0A194RPY2 A0A0U1XFY8 A0A212EIX7 A0A194Q114 H9JA03 A0A0L7LTC4

Pubmed

26642898 28756777 26354079 26227816 22118469 19121390 + More

EMBL

KF831575 AIT40272.1 NWSH01004350 PCG65190.1 KZ149899 PZC78606.1 + More
ODYU01012027 SOQ58111.1 KQ459583 KPI98678.1 KQ459896 KPJ19463.1 JTDY01000128 KOB78706.1 PZC78608.1 NWSH01000152 PCG78997.1 KPJ19464.1 KF831574 AIT40271.1 AGBW02014560 OWR41428.1 KPI98679.1 BABH01009452 KOB78705.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000037510 UP000007151 UP000005204 + More

PRIDE

H9JA03

Pfam

PF07679   I-set        + More
PF00041   fn3
PF00853   Runt

Interpro

IPR003599   Ig_sub        + More
IPR007110   Ig-like_dom
IPR003961   FN3_dom
IPR013783   Ig-like_fold
IPR013098   Ig_I-set
IPR036116   FN3_sf
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf
IPR008967   p53-like_TF_DNA-bd
IPR013524   Runt_dom
IPR012346   p53/RUNT-type_TF_DNA-bd_sf
IPR000040   AML1_Runt

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265
SSF49417   SSF49417

Gene 3D

2.60.40.10 2.60.40.720

CDD

cd00063 FN3

ProteinModelPortal

A0A0U1XFF9 A0A2A4J172 A0A2W1C0W5 A0A2H1WYH2 A0A194Q056 A0A194RNP9 + More
A0A0L7LU22 A0A2W1BU86 A0A2A4K415 A0A194RPY2 A0A0U1XFY8 A0A212EIX7 A0A194Q114 H9JA03 A0A0L7LTC4

PDB

5O5G E-value=2.28786e-80, Score=765

KEGG

101737078 K06754 roundabout, axon guidance receptor 2 | (RefSeq) immunoglobulin superfamily DCC subclass membe

GO

GO:0016021 GO:0005524 GO:0003700 GO:0003677 GO:0005634 GO:0005515 GO:0003676 GO:0015074 GO:0004352 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

SignalP

Position: 1 - 31, Likelihood: 0.762523

Length:

1010

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.32448

Exp number, first 60 AAs:

2.34841

Total prob of N-in:

0.12225

outside

1 - 692

TMhelix

693 - 715

inside

716 - 1010

Pi

306.034916

Theta

210.259972

Tajima's D

1.238534

CLR

0

CSRT

0.72096395180241

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree