Silkworm Genome Informatics Database

Gene

KWMTBOMO03486

Pre Gene Modal

BGIBMGA006352

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101747086_[Bombyx_mori]

Location

Bomo_Chr6(-):9226150-9233866 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.508

CDS

ATGATAGACGAAAAAAATGATACGCAGTATCCACCATCAACAGTTTTTCTCTTGGCTTATTATTGGGCTGCTGCAAGTCTTAGTGGCGCAGGCTTTGGAGACATCACAGCGCAGGATACCGGACATCTTGTATTGTCAATATGCGCTAATATCCACGGACTGCTATTTTTTGGATACGTTTACGCTAGGATAGCGTCGTTGAAAGCGATCGCCAATACGGTCGTTACAAAATTTCAAGAAAATATGAAACATTTACAAATGTTCTTGAATAGAGAAAAGGTTCCTTTGAATTTGAAGAAGTCAGTTATTGAATATTGGAAATATCAATGGAAAAGAACGGGTGGATGGTGTAGCTATCCCTCTGTGCTAAAGAAAGTTAAAGAATCGGTTGATTCAGCGGCCAAAGATTACGTATTGCCAACGTTTTCATTTGATAAGGACAGCGATGACATTGAAACATATGCTATGAGTTACGAGCCCGGTGATAATGATGACGAAAACGAAATTGATATTTCACAAATGGAGAGTCCCGAAAAAAGTAATGCCGAATCACACGGATCAAGATCATTAACATCAACCTATTTATATTTCACATCGGCAACGTTTTTGATTTTTAAGCCACACAGATGGTTCCGACGGAGCATCATACCTGACAGTAAATTTATAATATTTATGGAATACTTAATTATCGTCGCATCTTACGTCGACTTTATGTTGCTTATTTATCAAATGGCATTCCAATCAATTACTTATTTCTTTTACGAGTGCGTCGTGGTGGACGCTCTTTTCATTTTCAAATTGTTCTTGGACATTCACACCGGATACTTGAACAGATATGGAGATTACGTTTTGAGCCCAAGGAAAGTCCGAGAAAAGTACTTCTCGAATATTTTTCTACGTAGACTTGATTTTTTGGCGAACTTACCAATTAGTTATATAGCTTTTACTCTATCGCTAAAACCTTCAACGCAAATGATATTCTTTTGTTATCTTCGCACGCCGCAGCTATTCAGGATTTCTTACATGTTCAGTTATCGAAGCCAGAAAAATACAAACATAGGAACCGGTAATCTACTATTTAAACTGACATCTATTGCAATTTGGGCAACAATACTTTCACATATAAACGCCTGTATATTTTTCAAGTTATCGTGCCTTACGCCTGTGCATTGTACGTCCACTAATTGGATGTCGAAGAAAGAACTCAACTTAACCCACAAGTATATACAGGAAAGTTACTTCACGATTTACATTGCGTCCTTGTGGTACGTGATCAACTTGCTAACCATTACGGGAACTGGAGATGTAACAGCACAAAACAATTTCGAAGTTATAGAAACTATTATCATCATTATCATTATAAAATTCTGCACAGGTCTTCTAATATCGGAGATGTCAGCATTAATATCGGCGCATTCATCATCCCGAATAGCTTACGACTACGGAATAAATGAGCTTAGGGATGGCCTAAGAGACATGGGTTTGAGCGGCCATCAAATGGAAAAAATGTGGGCCTATGTAAAAGAACTGTGGAATCGACAACAAGGAAAACAGATGCCTGAATTAGTCCTGAACTTGCCAAGTCGTCTGCGCAGCCAGGTGATGTTGGCTGTGTACGGATCTCATATCAGGGACTCTGTTATATTCAAGAGAACTGAAGAAGATTTTCGGAGAATGTTGGCTCTGTGGATGAGACATTGCGTTTTCTTCCCCGGAAACTACATAGTCCAGTGCGGAGACTCGGACCAATGCATTTATTTTATCCACAGAGGACAAGTGGAAGTTTTGACAGTTCATCCTAATTTGACGGAGTCTATTTACGATATTTTGGGGCCCGAGGACAGCTTCGGTATTGCACAAGTACGTTTGGATCTTGTCATGGTTATCTTACACTTCAGAGATTAA

Protein

MIDEKNDTQYPPSTVFLLAYYWAAASLSGAGFGDITAQDTGHLVLSICANIHGLLFFGYVYARIASLKAIANTVVTKFQENMKHLQMFLNREKVPLNLKKSVIEYWKYQWKRTGGWCSYPSVLKKVKESVDSAAKDYVLPTFSFDKDSDDIETYAMSYEPGDNDDENEIDISQMESPEKSNAESHGSRSLTSTYLYFTSATFLIFKPHRWFRRSIIPDSKFIIFMEYLIIVASYVDFMLLIYQMAFQSITYFFYECVVVDALFIFKLFLDIHTGYLNRYGDYVLSPRKVREKYFSNIFLRRLDFLANLPISYIAFTLSLKPSTQMIFFCYLRTPQLFRISYMFSYRSQKNTNIGTGNLLFKLTSIAIWATILSHINACIFFKLSCLTPVHCTSTNWMSKKELNLTHKYIQESYFTIYIASLWYVINLLTITGTGDVTAQNNFEVIETIIIIIIIKFCTGLLISEMSALISAHSSSRIAYDYGINELRDGLRDMGLSGHQMEKMWAYVKELWNRQQGKQMPELVLNLPSRLRSQVMLAVYGSHIRDSVIFKRTEEDFRRMLALWMRHCVFFPGNYIVQCGDSDQCIYFIHRGQVEVLTVHPNLTESIYDILGPEDSFGIAQVRLDLVMVILHFRD

Uniprot

A0A2H1WP26 A0A2A4JMM9 A0A2W1BU47 A0A194RNP4 A0A212EWJ9 A0A139WMM2 + More
A0A194QB84 A0A2H1VR22 E0V9V2 A0A3M6UEY5 A0A2G8JU02

Pubmed

28756777 26354079 22118469 18362917 19820115 20566863 + More
30382153 29023486

EMBL

ODYU01009962 SOQ54726.1 NWSH01001063 PCG72844.1 KZ149899 PZC78602.1 + More
KQ459896 KPJ19458.1 AGBW02011942 OWR45880.1 KQ971312 KYB29220.1 KQ459232 KPJ02722.1 ODYU01003916 SOQ43269.1 DS234996 EEB10158.1 RCHS01001698 RMX52129.1 MRZV01001259 PIK39247.1

Proteomes

UP000218220 UP000053240 UP000007151 UP000007266 UP000053268 UP000009046 + More
UP000275408 UP000230750

Pfam

PF07885   Ion_trans_2        + More
PF00027   cNMP_binding
PF08561   Ribosomal_L37
PF00520   Ion_trans

Interpro

IPR018490   cNMP-bd-like        + More
IPR014710   RmlC-like_jellyroll
IPR013099   K_chnl_dom
IPR000595   cNMP-bd_dom
IPR013870   Ribosomal_L37_mit
IPR005821   Ion_trans_dom
IPR018488   cNMP-bd_CS
IPR003938   K_chnl_volt-dep_EAG/ELK/ERG

SUPFAM

SSF51206 SSF51206

Gene 3D

2.60.120.10

CDD

cd00038 CAP_ED

ProteinModelPortal

A0A2H1WP26 A0A2A4JMM9 A0A2W1BU47 A0A194RNP4 A0A212EWJ9 A0A139WMM2 + More
A0A194QB84 A0A2H1VR22 E0V9V2 A0A3M6UEY5 A0A2G8JU02

PDB

5VA2 E-value=1.42223e-18, Score=230

KEGG

101747086 no KO assigned | (RefSeq) uncharacterized LOC101747086

GO

GO:0016021 GO:0005887 GO:0071805 GO:0005249 GO:0042391 GO:0005216 GO:0005244 GO:0005267 GO:0034765

Length:

634

Number of predicted TMHs:

8

Exp number of AAs in TMHs:

174.897210000001

Exp number, first 60 AAs:

40.14692

Total prob of N-in:

0.96154

POSSIBLE N-term signal

sequence

inside

1 - 12

TMhelix

13 - 35

outside

36 - 39

TMhelix

40 - 62

inside

63 - 220

TMhelix

221 - 243

outside

244 - 246

TMhelix

247 - 269

inside

270 - 296

TMhelix

297 - 319

outside

320 - 363

TMhelix

364 - 386

inside

387 - 412

TMhelix

413 - 432

outside

433 - 446

TMhelix

447 - 469

inside

470 - 634

Pi

179.420809

Theta

139.202967

Tajima's D

0.509208

CLR

1.619696

CSRT

0.52012399380031

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics