Gene

KWMTBOMO03480

Pre Gene Modal

BGIBMGA006528

Annotation

PREDICTED:_lachesin-like_[Bombyx_mori]

Location

Bomo_Chr6(+):8985317-8987102      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.243 Mitochondrial   Reliability : 1.657 Nuclear   Reliability : 1.228

CDS

ATGCAAGTTACGCTGCAGTGCTACGTTGAGTCGTCTCCTAAATCTCTAAATACATGGCAGAGAGGAAAATCACACAACAGTGGGAAACTTTTGAACAGCTCCAAATACGTTATATCCGAAGAGATATTGAACGAGTACGCGTTGCGTATGAACTTGACTATAACTCGTCTTAAGAAGAATGACTTCGGCGACTACACGTGCTCGGCTGTCAACGGATATGGAAGAGCAGATGGAGCTATTAATTTAAAAGACGTAAGATAG

Protein

MQVTLQCYVESSPKSLNTWQRGKSHNSGKLLNSSKYVISEEILNEYALRMNLTITRLKKNDFGDYTCSAVNGYGRADGAINLKDVR

Uniprot

H9JAI3   A0A2H1VT25   A0A2A4K0S7   A0A2W1BLT9   A0A194Q104   A0A194RQ57   + More
A0A212F663   A0A195FUG6   A0A158N921   F4WHI3   A0A195BVQ0   A0A151J7V8   A0A151I737   A0A151WP42   E2BBN1   A0A026W6I4   A0A3L8DSL2   E9JAV8   A0A088AJG9   A0A2A3E6U9   E9ISZ2   A0A154PIL3   A0A0J7L7S8   A0A195CRF6   A0A195F292   F4X3S8   A0A195DZY3   A0A158P0L9   A0A0L7QRK4   A0A195BGK8   A0A151XJQ1   A0A139WP45   A0A0L7QPA4   E2AYG8   E2BDH1   A0A3L8DWQ2   A0A1B6GQL7   A0A026WPA9   A0A1B6IV82   E0VQ13   A0A310SMD6   E2ACI2   A0A0P8XKQ0   A0A2S2PAL1   A0A088ALP5   A0A1Y1LUS4   A0A2S2QZG4   T1HBZ5   A0A0M9A176   Q7PLL7   A0A212F656   J9K4J3   A0A0Q5VYL1   A0A0Q9X6E4   A0A2P8ZE13   A0A3B0JU01   A0A182T902   A0A182KN40   K7J3Y4   A0A182YN85   A0A1J1IRA3   A0A3B0JWZ3   A0A0R3NW91   B5DSY7   A0A0L7L5K7   A0A2H1X1V9   A0A194RTL3   B4GX90   A0A336LZ60   A0A2W1BJM5   A0A2A4K0W3   A0A182J2A1   A0A1S4GYV3   A0A182UPK0   A0A194Q5K0   A0A182TKB1   A0A182WFE3   A0A2M4BMW1   A0A182IBH9   A0A182MPH9   A0A1I8NHV3   A0A182F373   A0A067R5S2   A0A0L0BQE5   A0A2A4JZ35   A0A2M4CNM6   A0A182X5U6   A0A182RK29   A0A154P8T4   W5JH43   Q7Q8F3   B4LQZ3   A0A0R1EA03   A0A182NGR2   A0A1B0GM78   A0A182QJ96   A0A1B6DQ18   B4NP19   A0A0M4EQU2   A0A2J7PZW6  

Pubmed

19121390    28756777    26354079    22118469    21347285    21719571    + More
20798317    24508170    30249741    21282665    18362917    19820115    20566863    17994087    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    29403074    20075255    25244985    15632085    26227816    12364791    25315136    24845553    26108605    20920257    23761445    17550304   

EMBL

BABH01009416    BABH01009417    ODYU01003976    SOQ43384.1    NWSH01000340    PCG77280.1    + More
KZ150004    PZC75251.1    KQ459583    KPI98669.1    KQ459896    KPJ19455.1    AGBW02010073    OWR49223.1    KQ981268    KYN43937.1    ADTU01009044    GL888161    EGI66337.1    KQ976405    KYM91883.1    KQ979640    KYN20030.1    KQ978451    KYM93933.1    KQ982907    KYQ49465.1    GL447128    EFN86908.1    KK107372    EZA51722.1    QOIP01000004    RLU23401.1    GL770679    EFZ10061.1    KZ288349    PBC27420.1    GL765434    EFZ16262.1    KQ434924    KZC11652.1    LBMM01000345    KMR00004.1    KQ977394    KYN03077.1    KQ981856    KYN34501.1    GL888624    EGI58875.1    KQ979955    KYN18470.1    ADTU01005317    ADTU01005318    ADTU01005319    ADTU01005320    ADTU01005321    KQ414775    KOC61270.1    KQ976490    KYM83356.1    KQ982074    KYQ60508.1    KQ971307    KYB29768.1    KQ414821    KOC60460.1    GL443910    EFN61503.1    GL447620    EFN86283.1    QOIP01000003    RLU24663.1    GECZ01005052    JAS64717.1    KK107139    EZA57855.1    GECU01016857    JAS90849.1    DS235389    EEB15469.1    KQ762190    OAD56151.1    GL438528    EFN68848.1    CH902628    KPU75357.1    GGMR01013882    MBY26501.1    GEZM01051704    JAV74737.1    GGMS01013727    MBY82930.1    ACPB03006633    KQ435794    KOX73793.1    BT128705    AE013599    AEG79841.1    EAA46121.5    OWR49222.1    ABLF02036994    ABLF02037003    CH954179    KQS61768.1    CH933807    KRG03819.1    PYGN01000084    PSN54752.1    OUUW01000010    SPP85594.1    AAZX01004985    CVRI01000055    CRL01622.1    SPP85593.1    CH475657    KRT05212.1    EDY70933.2    JTDY01002784    KOB70737.1    ODYU01012820    SOQ59313.1    KPJ19456.1    CH479195    EDW27201.1    UFQT01000326    SSX23274.1    PZC75249.1    PCG77282.1    AXCP01007149    AAAB01008944    KPI98670.1    GGFJ01005254    MBW54395.1    APCN01000703    AXCM01008344    AXCM01008345    AXCM01008346    KK852725    KDR17669.1    JRES01001533    KNC22208.1    PCG77281.1    GGFL01002746    MBW66924.1    KQ434827    KZC07628.1    ADMH02001539    ETN62134.1    EAA10137.4    CH940649    EDW64532.2    CH892674    KRK05534.1    AJVK01011203    AJVK01011204    AJVK01011205    AXCN02002079    GEDC01009539    JAS27759.1    CH964289    EDW86108.2    CP012523    ALC39170.1    NEVH01020331    PNF21868.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000078541    + More
UP000005205    UP000007755    UP000078540    UP000078492    UP000078542    UP000075809    UP000008237    UP000053097    UP000279307    UP000005203    UP000242457    UP000076502    UP000036403    UP000053825    UP000007266    UP000000311    UP000009046    UP000007801    UP000015103    UP000053105    UP000000803    UP000007819    UP000008711    UP000009192    UP000245037    UP000268350    UP000075901    UP000002358    UP000076408    UP000183832    UP000001819    UP000037510    UP000008744    UP000075880    UP000075903    UP000075902    UP000075920    UP000075840    UP000075883    UP000095301    UP000069272    UP000027135    UP000037069    UP000076407    UP000075900    UP000000673    UP000007062    UP000008792    UP000002282    UP000075884    UP000092462    UP000075886    UP000007798    UP000092553    UP000235965   

PRIDE

H9JAI3   

Pfam

PF07679   I-set        + More
PF00047   ig
PF17906   HTH_48
PF13855   LRR_8

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013098   Ig_I-set       
IPR013106   Ig_V-set       
IPR003006   Ig/MHC_CS       
IPR013151   Immunoglobulin       
IPR041426   Mos1_HTH       
IPR013087   Znf_C2H2_type       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10     3.80.10.10    

ProteinModelPortal

H9JAI3   A0A2H1VT25   A0A2A4K0S7   A0A2W1BLT9   A0A194Q104   A0A194RQ57   + More
A0A212F663   A0A195FUG6   A0A158N921   F4WHI3   A0A195BVQ0   A0A151J7V8   A0A151I737   A0A151WP42   E2BBN1   A0A026W6I4   A0A3L8DSL2   E9JAV8   A0A088AJG9   A0A2A3E6U9   E9ISZ2   A0A154PIL3   A0A0J7L7S8   A0A195CRF6   A0A195F292   F4X3S8   A0A195DZY3   A0A158P0L9   A0A0L7QRK4   A0A195BGK8   A0A151XJQ1   A0A139WP45   A0A0L7QPA4   E2AYG8   E2BDH1   A0A3L8DWQ2   A0A1B6GQL7   A0A026WPA9   A0A1B6IV82   E0VQ13   A0A310SMD6   E2ACI2   A0A0P8XKQ0   A0A2S2PAL1   A0A088ALP5   A0A1Y1LUS4   A0A2S2QZG4   T1HBZ5   A0A0M9A176   Q7PLL7   A0A212F656   J9K4J3   A0A0Q5VYL1   A0A0Q9X6E4   A0A2P8ZE13   A0A3B0JU01   A0A182T902   A0A182KN40   K7J3Y4   A0A182YN85   A0A1J1IRA3   A0A3B0JWZ3   A0A0R3NW91   B5DSY7   A0A0L7L5K7   A0A2H1X1V9   A0A194RTL3   B4GX90   A0A336LZ60   A0A2W1BJM5   A0A2A4K0W3   A0A182J2A1   A0A1S4GYV3   A0A182UPK0   A0A194Q5K0   A0A182TKB1   A0A182WFE3   A0A2M4BMW1   A0A182IBH9   A0A182MPH9   A0A1I8NHV3   A0A182F373   A0A067R5S2   A0A0L0BQE5   A0A2A4JZ35   A0A2M4CNM6   A0A182X5U6   A0A182RK29   A0A154P8T4   W5JH43   Q7Q8F3   B4LQZ3   A0A0R1EA03   A0A182NGR2   A0A1B0GM78   A0A182QJ96   A0A1B6DQ18   B4NP19   A0A0M4EQU2   A0A2J7PZW6  

PDB

6EFY     E-value=6.00371e-10,     Score=147

KEGG

101746812    no KO assigned | (RefSeq) lachesin-like

GO

GO:0016021   GO:0005887   GO:0003676   GO:0005515   GO:0005524   GO:0008270   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

86

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00042

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.43708

outside

1  -  86

 

 

Pi

163.198313

Theta

158.440027

Tajima's D

0.0289

CLR

0

CSRT

0.373781310934453

Interpretation

Uncertain