Silkworm Genome Informatics Database

Gene

KWMTBOMO03477

Annotation

PREDICTED:_protein_jim_lovell-like_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr6(-):8854467-8858902 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.403

CDS

ATGGACCAACAGTTCTCATTGTCTTGGAACAATTTTCACGGAAACTTAACGAAGGGATTCGCCGGCTTATTGGGCAACAGCGAGTTCGTCGATGTTACAATAGCAGTTGAAGGGCATTTACTACAAGCCCATAAAGTGATATTATCAATATGTTCGCCGTATTTCAAGAAAATGTTCCTAATGAATCCGTGTCAACATCCAATAATTGTTTTAAGAGATGTCACTCACAAAGCAATGAGAGATTTACTACAATTTATGTACCATGGTGAAGTTAGCGTAAAAAGAGAAGATCTCACTAGTTTTATAGGTACAGCAGAGGTTTTGCAGATCAAAGGATTAACAAACAAAGAGACTGAAGAAGAAGAGATTGAAAAGGAACAAAATTTATCCAAACAAACATTGGAGGCTCAAAATATTCTAGAAACTGACTCACACAATACAGAAAACTATGATCATTCTGATGAAACAACTAACAGTGAACTTATTCTGCTCAAACAAAGACAGTTTATAGAAAAATTGCAAAGACTAATTGATATCACAACTTCTTATAATACTCATGTTCAGAAGAATAATAATGAGATAAATGAAAAAATTAAGGAACAACTTTCACCTGAACATAGGTTAGAATTGAAAACTGAATGTGACGATGGAGACATAGTTGTGACTGATCCAGCAGCTTGTACAACTCCAAAAAATTATGATGTTGCCAGAGATATGTCTAAAGATACGGTGCCAATAGACTATCCATCACCACAAGACAGTGCCCTGTCATTGGTCGTGAACGGATCTAGTGAAAACCAACTGTTACCTGTGCGGTATAAATACATTTACAGTAGGAAAGGTCACAAACAATTGGTGCATATGAACTTTGTATATACGAAACATTCTACGACACATGGAAAAACTTCGTGGCGATGCGTTCAGTACTTCTCATTAAATAGGTGTCCCGCTACGGTGGAAACTATAGATTCTATGATATATGCGGTGAACCATCAACATAATCATGAGGACTGCATCGAGAAACTATCTAGAAACAATGTTTATGAAATGAATGTTTCGCCAAAACAAGAATGA

Protein

MDQQFSLSWNNFHGNLTKGFAGLLGNSEFVDVTIAVEGHLLQAHKVILSICSPYFKKMFLMNPCQHPIIVLRDVTHKAMRDLLQFMYHGEVSVKREDLTSFIGTAEVLQIKGLTNKETEEEEIEKEQNLSKQTLEAQNILETDSHNTENYDHSDETTNSELILLKQRQFIEKLQRLIDITTSYNTHVQKNNNEINEKIKEQLSPEHRLELKTECDDGDIVVTDPAACTTPKNYDVARDMSKDTVPIDYPSPQDSALSLVVNGSSENQLLPVRYKYIYSRKGHKQLVHMNFVYTKHSTTHGKTSWRCVQYFSLNRCPATVETIDSMIYAVNHQHNHEDCIEKLSRNNVYEMNVSPKQE

Uniprot

A0A2A4J7E5 H9JA11 A0A2W1BJK3 A0A2A4J7Z6 A0A2H1VRG7 A0A0L7LCR8 + More
A0A1E1WM04 A0A2A3E0V7 A0A088A8H0 A0A182U271 A0A310SME0 A0A0M9A8U7 A0A1Y1K4D4

Pubmed

19121390 28756777 26227816 28004739

EMBL

NWSH01002631 PCG67799.1 BABH01009407 KZ150004 PZC75252.1 PCG67798.1 + More
ODYU01003976 SOQ43388.1 JTDY01001746 KOB73006.1 GDQN01003005 JAT88049.1 KZ288470 PBC25340.1 KQ761005 OAD58415.1 KQ435724 KOX78303.1 GEZM01095826 JAV55318.1

Proteomes

UP000218220 UP000005204 UP000037510 UP000242457 UP000005203 UP000075902 + More
UP000053105

PRIDE

H9JA11

Pfam

PF04500   FLYWCH        + More
PF00651   BTB
PF13842   Tnp_zf-ribbon_2

Interpro

IPR007588   Znf_FLYWCH        + More
IPR000210   BTB/POZ_dom
IPR011333   SKP1/BTB/POZ_sf
IPR032718   PGBD4_C_Znf-ribbon

SUPFAM

SSF54695 SSF54695

ProteinModelPortal

A0A2A4J7E5 H9JA11 A0A2W1BJK3 A0A2A4J7Z6 A0A2H1VRG7 A0A0L7LCR8 + More
A0A1E1WM04 A0A2A3E0V7 A0A088A8H0 A0A182U271 A0A310SME0 A0A0M9A8U7 A0A1Y1K4D4

PDB

4HXI E-value=1.12564e-06, Score=125

KEGG

101735938 no KO assigned | (RefSeq) protein abrupt-like

GO

GO:0005515 GO:0005524 GO:0008270 GO:0016491 GO:0004352 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Length:

357

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03253

Exp number, first 60 AAs:

0.03203

Total prob of N-in:

0.01116

outside

1 - 357

Pi

186.900979

Theta

180.370655

Tajima's D

0.090176

CLR

0.2706

CSRT

0.393780310984451

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics