Gene

KWMTBOMO03470  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006359

Annotation

PREDICTED:_WD_repeat-containing_protein_36_[Plutella_xylostella]

Location

Bomo_Chr6(-):8789436-8791082      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.275

CDS

ATGGTTGGAGACAAATATCATGTCTACACTGCAAGTGAAAATAACATTTATGCCTGGAGACGTGGTTGCGAATTAACGCATGTGTATAGAGGACACAATGCTTCCATTAAGTTGATGTATCCTTTTGGCCCTCATCTTATATCAATAGATGAAGAAAACATTTTGAAAGTGTTTGATATCAAAGAAGAGACAGTAGTACTAGAAATACCATATGAAAAGAAAGTATTTGACATAACCACTATATGTCATCCTCCTACATATTTAAACAAAGTTCTCTTGGGCAGCAAACAAGGCAGATTACAGTTATGGAATTTAAATACATCAAAATTAGTTTATACTTTTAATGGCTGGAACTCTTGCGTTAAAATTACGGAGCCAGCTCCTGCAATCGATGTTGTTGCGATAGCTTTAGCGAATAACAAGATTGTGCTTCACAATTTGCGTTATGATCAACTTGTTATGGAGTTCACCCATGACTGGGGAAAGGTCACTTCTCTGTCATTTCAAATAAACGGCACACCTATTATGGTTACCGGAAGCTCTGCCGGTCATATAGTTACATGGAACTTAGAAGAAAAGAGAGTTCATACACAGATGGAGTCTGCTCATAATGCTAGTGTAGCAGGCTTGCACTGTATGTTATCGGAACCATTGATGGTAACAAATTCTGAGGACAACTCTCTGAAGCTATGGATATTTGATATGCCTGATGGTGGAGCTCGACTTTTGCGAAAAAGAGACGGACCCGCTCTCCCTCCAAATTATGTAACATATTGTGGCTTAACTGGAGATAATCTTTTAGTAGCTGGAAGAGATAGTAGCCTCTACATTATGAATACTATATCAGAAACATTCAATAAGAATTTGGGGAGAGCTTCTCGTAACAGAAAGGCTTCCAAGAAAAAAAGGGTACTGGCATAA

Protein

MVGDKYHVYTASENNIYAWRRGCELTHVYRGHNASIKLMYPFGPHLISIDEENILKVFDIKEETVVLEIPYEKKVFDITTICHPPTYLNKVLLGSKQGRLQLWNLNTSKLVYTFNGWNSCVKITEPAPAIDVVAIALANNKIVLHNLRYDQLVMEFTHDWGKVTSLSFQINGTPIMVTGSSAGHIVTWNLEEKRVHTQMESAHNASVAGLHCMLSEPLMVTNSEDNSLKLWIFDMPDGGARLLRKRDGPALPPNYVTYCGLTGDNLLVAGRDSSLYIMNTISETFNKNLGRASRNRKASKKKRVLA

Uniprot

H9JA14   A0A2H1VSE6   A0A194RNN4   A0A2W1BK48   A0A194PWS8   A0A212F654   + More
A0A2A4J6U5   A0A0L7L9Q7   A0A1B6HHV9   A0A2P8XU64   A0A067RF02   D6WA27   A0A0C9PWV5   A0A2J7Q9L4   A0A0P4WGW6   A0A1Y1JXJ9   U4UPS4   N6TDF3   A0A1B6L3N3   A0A1W4XNP5   A0A151X8B7   A0A1B6EQG5   E0VZA4   A0A3Q0JD06   A0A1B6GKZ8   A0A232FHL5   A0A0T6ATW8   A0A195BYD7   A0A195DXM2   E2ABT5   A0A1B6CIV3   A0A158NP15   A0A154NWL2   F4W8X4   A0A0L7QLK8   K7JGZ9   R7U7G1   A0A195F115   A0A151ILD5   A0A2R2MKY5   A0A088AG54   A0A2R2MKY0   A0A1S3H174   A0A1S3H3P4   A0A2A3EFB5   R7UU23   E2BZ01   A0A026VX66   E9IED0   A0A3L8DHG1   A0A310SV31   A0A0J7KNA4   A0A0M8ZXP0   A0A1I8MSS4   T1PI57   A0A1I8NQ29   A0A336L6A0   A0A336LZ66   A0A1B0CG22   A0A2R7VQ96   A0A0L0CH26   A0A0L8IFQ0   K1PWK0   A0A2S2PSE4   A0A182H6A8   A0A2T7NCY8   A0A034VP19   A0A087UMR6   A0A2H8TWA3   A0A210QJD0   A0A0K8UXU6   M3XKA9   A0A2S2QZY6   J9JVW7   W5MWH2   A0A0P6DS68   A0A0A1WRH8   A0A0P6E595   Q16W76   A0A1S4FLX1   A0A2L2Y729   W4XV11   A0A182RDZ2   H3ALR4   A0A091TQ85   A0A093CLB3   A0A0P5YU77   A2RRX7   A0A1L8I1V0   A0A1J1I3Y2   E9FU09   C3YZV9   A0A164LWH6   A0A091J9Y6   A0A2G8LP09   A0A0P5MNI2   A0A182PQS2   Q7Q9X1   A0A182X2J6  

Pubmed

19121390    26354079    28756777    22118469    26227816    29403074    + More
24845553    18362917    19820115    28004739    23537049    20566863    28648823    20798317    21347285    21719571    20075255    23254933    24508170    21282665    30249741    25315136    26108605    22992520    26483478    25348373    28812685    9215903    25830018    17510324    26561354    27762356    21292972    18563158    29023486    12364791    14747013    17210077   

EMBL

BABH01009394    ODYU01004177    SOQ43765.1    KQ459896    KPJ19448.1    KZ150004    + More
PZC75258.1    KQ459589    KPI97473.1    AGBW02010074    OWR49220.1    NWSH01002631    PCG67805.1    JTDY01002064    KOB72197.1    GECU01033406    JAS74300.1    PYGN01001339    PSN35551.1    KK852510    KDR22347.1    KQ971312    EEZ98071.1    GBYB01005988    JAG75755.1    NEVH01016348    PNF25272.1    GDRN01053326    JAI66173.1    GEZM01097920    JAV54042.1    KB632309    ERL92025.1    APGK01042225    KB741002    ENN75768.1    GEBQ01021680    JAT18297.1    KQ982422    KYQ56621.1    GECZ01029609    JAS40160.1    DS235851    EEB18710.1    GECZ01008141    GECZ01006699    JAS61628.1    JAS63070.1    NNAY01000180    OXU30241.1    LJIG01022807    KRT78611.1    KQ976394    KYM93320.1    KQ980167    KYN17364.1    GL438356    EFN69112.1    GEDC01023941    JAS13357.1    ADTU01022032    KQ434773    KZC03983.1    GL887974    EGI69333.1    KQ414914    KOC59513.1    AMQN01026725    KB307233    ELT99075.1    KQ981891    KYN33794.1    KQ977120    KYN05563.1    KZ288262    PBC30427.1    AMQN01007263    KB300307    ELU06901.1    GL451538    EFN79073.1    KK107648    EZA48352.1    GL762576    EFZ21087.1    QOIP01000008    RLU19781.1    KQ760166    OAD61660.1    LBMM01005134    KMQ91792.1    KQ435801    KOX73225.1    KA648451    AFP63080.1    UFQS01001136    UFQT01001136    SSX09170.1    SSX29080.1    UFQT01000244    SSX22311.1    AJWK01010656    AJWK01010657    KK854026    PTY09702.1    JRES01000409    KNC31502.1    KQ415813    KOG00327.1    JH818915    EKC28722.1    GGMR01019678    MBY32297.1    JXUM01113766    KQ565724    KXJ70732.1    PZQS01000014    PVD19040.1    GAKP01015090    JAC43862.1    KK120606    KFM78655.1    GFXV01006721    MBW18526.1    NEDP02003363    OWF48852.1    GDHF01020898    JAI31416.1    AFYH01178685    AFYH01178686    AFYH01178687    AFYH01178688    AFYH01178689    AFYH01178690    AFYH01178691    AFYH01178692    AFYH01178693    AFYH01178694    GGMS01014115    MBY83318.1    ABLF02017288    AHAT01013262    AHAT01013263    AHAT01013264    GDIQ01073086    JAN21651.1    GBXI01012633    JAD01659.1    GDIQ01073087    JAN21650.1    CH477573    EAT38834.1    IAAA01017395    LAA03951.1    AAGJ04111432    KK460227    KFQ78717.1    KL248872    KFV16650.1    GDIP01054590    JAM49125.1    BC131896    AAI31897.1    CM004466    OCU02251.1    CVRI01000040    CRK95005.1    GL732524    EFX89548.1    GG666566    EEN54380.1    LRGB01003123    KZS04500.1    KL218793    KFP08521.1    MRZV01000022    PIK61910.1    GDIQ01160862    JAK90863.1    AAAB01008898    EAA09168.3   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    + More
UP000245037    UP000027135    UP000007266    UP000235965    UP000030742    UP000019118    UP000192223    UP000075809    UP000009046    UP000079169    UP000215335    UP000078540    UP000078492    UP000000311    UP000005205    UP000076502    UP000007755    UP000053825    UP000002358    UP000014760    UP000078541    UP000078542    UP000085678    UP000005203    UP000242457    UP000008237    UP000053097    UP000279307    UP000036403    UP000053105    UP000095301    UP000095300    UP000092461    UP000037069    UP000053454    UP000005408    UP000069940    UP000249989    UP000245119    UP000054359    UP000242188    UP000008672    UP000007819    UP000018468    UP000008820    UP000007110    UP000075900    UP000186698    UP000183832    UP000000305    UP000001554    UP000076858    UP000054308    UP000230750    UP000075885    UP000007062    UP000076407   

PRIDE

H9JA14   

Pfam

PF04192   Utp21        + More
PF00400   WD40
PF12894   ANAPC4_WD40

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR007319   SSU_processome_Utp21       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR020472   G-protein_beta_WD-40_rep       
IPR011043   Gal_Oxase/kelch_b-propeller       
IPR020719   RNA3'_term_phos_cycl-like_CS       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50965   SSF50965       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JA14   A0A2H1VSE6   A0A194RNN4   A0A2W1BK48   A0A194PWS8   A0A212F654   + More
A0A2A4J6U5   A0A0L7L9Q7   A0A1B6HHV9   A0A2P8XU64   A0A067RF02   D6WA27   A0A0C9PWV5   A0A2J7Q9L4   A0A0P4WGW6   A0A1Y1JXJ9   U4UPS4   N6TDF3   A0A1B6L3N3   A0A1W4XNP5   A0A151X8B7   A0A1B6EQG5   E0VZA4   A0A3Q0JD06   A0A1B6GKZ8   A0A232FHL5   A0A0T6ATW8   A0A195BYD7   A0A195DXM2   E2ABT5   A0A1B6CIV3   A0A158NP15   A0A154NWL2   F4W8X4   A0A0L7QLK8   K7JGZ9   R7U7G1   A0A195F115   A0A151ILD5   A0A2R2MKY5   A0A088AG54   A0A2R2MKY0   A0A1S3H174   A0A1S3H3P4   A0A2A3EFB5   R7UU23   E2BZ01   A0A026VX66   E9IED0   A0A3L8DHG1   A0A310SV31   A0A0J7KNA4   A0A0M8ZXP0   A0A1I8MSS4   T1PI57   A0A1I8NQ29   A0A336L6A0   A0A336LZ66   A0A1B0CG22   A0A2R7VQ96   A0A0L0CH26   A0A0L8IFQ0   K1PWK0   A0A2S2PSE4   A0A182H6A8   A0A2T7NCY8   A0A034VP19   A0A087UMR6   A0A2H8TWA3   A0A210QJD0   A0A0K8UXU6   M3XKA9   A0A2S2QZY6   J9JVW7   W5MWH2   A0A0P6DS68   A0A0A1WRH8   A0A0P6E595   Q16W76   A0A1S4FLX1   A0A2L2Y729   W4XV11   A0A182RDZ2   H3ALR4   A0A091TQ85   A0A093CLB3   A0A0P5YU77   A2RRX7   A0A1L8I1V0   A0A1J1I3Y2   E9FU09   C3YZV9   A0A164LWH6   A0A091J9Y6   A0A2G8LP09   A0A0P5MNI2   A0A182PQS2   Q7Q9X1   A0A182X2J6  

PDB

5WYK     E-value=1.13625e-27,     Score=305

KEGG

101735526    K14554 U3 small nucleolar RNA-associated protein 21 | (RefSeq) WD repeat-containing protein 36

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040   GO:0006364   GO:0034388   GO:0005730   GO:0005737   GO:0016021   GO:0005515   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

306

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08401

Exp number, first 60 AAs:

0.00387

Total prob of N-in:

0.09471

outside

1  -  306

 

 

Pi

171.254883

Theta

199.603171

Tajima's D

-0.624956

CLR

0

CSRT

0.213589320533973

Interpretation

Uncertain